mRNA_P-littoralis_Contig1197.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1197.10.1
Unique NamemRNA_P-littoralis_Contig1197.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1197.10.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 2.470e-112
Identity = 181/303 (59.74%), Postives = 221/303 (72.94%), Query Frame = 2 
Query:  719 EYNLGFLEKEQDRMRSFTWEKDRKLFVSEHTPIAKLSRGSMLAAGSPVCNEAFKLFFGVSETLISSCKGTEKARATSSIGRTPIRASRDHPKLERVVAFLVRHEHIFAQKMPHQDESYLYLHSKNELYNDYLKDQRDFFKADPASMATFVCSKDYFNKVWRCYFPTLKLKPNGDFMLCQTCVLLKEKIHGTAGSRGIQNEAEREEHLQQYAEHVEEVSQDRLTSATFAK*AEIALMNGVPWEKLYFMVDAANQSNFATPLSASNAHGIDDKGYAERQKIYGVYVVGVSMDVFMAPQILTTGTR 1627
            ++N  +L  EQDR    T E DRK FV    P  KL++GSM+AA + VCN AF  FFGVSETLISSCK T KA+A+SS+ R  I ++RD PKLE VVAFL RHE ++ QKMP+ D+SYLYL SK ELY +Y K+ R+ +  DPAS+A  +CSK+YFN+VW  +F  LKLKPNGDFMLC+ C LLKEKIHG AGSRG+ +EAERE H   Y EH+++V +DR+  A     A +A  NG PWE +Y  VDAANQSNFATP+ AS AHG+DD+GYAERQKIYG  V G+ M VFM PQIL TG+ 
Sbjct:  159 QHNWEYLRAEQDRFAKLTREPDRKAFVIAQVPPKKLAKGSMIAANTVVCNTAFTRFFGVSETLISSCKKTPKAQASSSVHRASIASTRDRPKLEGVVAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGTGSN 461
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BLAST of mRNA_P-littoralis_Contig1197.10.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 7.080e-48
Identity = 114/259 (44.02%), Postives = 150/259 (57.92%), Query Frame = 2 
Query: 1094 ELYNDYLKDQRDFFKADPASMATFVCSKDYFNKVWRCYFPTLKLKPNGDFMLCQTCVLLKEKIHGT-AGSRGIQNEAEREEHLQQYAEHVEEVSQDRLTSATFAK*AEIALMNGVPWEKLYFMVDAANQSNFATPLSASNAHGIDDKGYAERQKIYGVYVVGVSMDVFMAPQILTTGTRSAFVFLWLQALLTVRVSLWLIGGPLYPVVVLTDD------NRYVFCCVAVCIQEG-------SFVRVGPTSVR-QQCQSC 1825
            EL+++Y    R     +   +   +C++ YF K+W   FP LK+KP+GDFMLC+ C LLK  I GT +GSRGIQ+EAE+    ++Y +H+E+VS DR   A     AE A MNGVPWE+ Y M+D AN +NF  PLS   AHGIDDKGY ER K+YGV V GV M+VF APQIL TGT      L+ Q  + + +S W  G  L  V V  D+      N Y+   +A  +  G        F+ VG T ++  Q  SC
Sbjct:   13 ELFDEYESQTRKELHGELVGLDAALCTRQYFKKIWAEEFPHLKVKPSGDFMLCKICTLLKSAIFGTQSGSRGIQDEAEKNLKRKEYEDHMEDVSNDRKAIAKLKTAAENAKMNGVPWEQPYCMMDGANSNNFTVPLSKDKAHGIDDKGYGERAKVYGVLVAGVVMNVFFAPQILGTGTNLVATALYYQ-FMELTLS-W--GHTLGDVTVQVDNTVSENKNNYLMGILAAMVGRGIMRTVTLCFMMVGHTHIQIDQIFSC 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE2.470e-11259.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL03_9PHAE7.080e-4844.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:13225..16738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1863
Hectar predicted targeting categoryother localisation
Exons6
Cds size720
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.10.1prot_P-littoralis_Contig1197.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1197 14076..16034 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.5694265-UTR-P-littoralis_Contig1197:13224..135561680789503.5694265-UTR-P-littoralis_Contig1197:13224..13556Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 13225..13556 -
1680789503.5810194-UTR-P-littoralis_Contig1197:13952..140751680789503.5810194-UTR-P-littoralis_Contig1197:13952..14075Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 13953..14075 -
1680789503.6360981-UTR-P-littoralis_Contig1197:16034..162661680789503.6360981-UTR-P-littoralis_Contig1197:16034..16266Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 16035..16266 -
1680789503.646486-UTR-P-littoralis_Contig1197:16282..167381680789503.646486-UTR-P-littoralis_Contig1197:16282..16738Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 16283..16738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.59553-CDS-P-littoralis_Contig1197:14075..141201680789503.59553-CDS-P-littoralis_Contig1197:14075..14120Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 14076..14120 -
1680789503.6038463-CDS-P-littoralis_Contig1197:14259..145291680789503.6038463-CDS-P-littoralis_Contig1197:14259..14529Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 14260..14529 -
1680789503.6143124-CDS-P-littoralis_Contig1197:14814..149471680789503.6143124-CDS-P-littoralis_Contig1197:14814..14947Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 14815..14947 -
1680789503.6266692-CDS-P-littoralis_Contig1197:15762..160341680789503.6266692-CDS-P-littoralis_Contig1197:15762..16034Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 15763..16034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1197.10.1

>prot_P-littoralis_Contig1197.10.1 ID=prot_P-littoralis_Contig1197.10.1|Name=mRNA_P-littoralis_Contig1197.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MSSTSCPGRVEYNLGFLEKEQDRMRSFTWEKDRKLFVSEHTPIAKLSRGS
MLAAGSPVCNEAFKLFFGVSETLISSCKGTEKARATSSIGRTPIRASRDH
PKLERVVAFLVRHEHIFAQKMPHQDESYLYLHSKNELYNDYLKDQRDFFK
ADPASMATFVCSKDYFNKVWRCYFPTLKLKPNGDFMLCQTCVLLKEKIHG
TAGSRGIQNEAEREEHLQQYAEHVEEVSQDRLTSATFAK*
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mRNA from alignment at P-littoralis_Contig1197:13225..16738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1197.10.1 ID=mRNA_P-littoralis_Contig1197.10.1|Name=mRNA_P-littoralis_Contig1197.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3514bp|location=Sequence derived from alignment at P-littoralis_Contig1197:13225..16738- (Pylaiella littoralis U1_48)
CATGAAATACATTAAAACCCACGCCGGCGCGGGTGGAAATGTCATGGAGA
GCATGAACAAATATTTCGTCTACCACAACTACCCATCGCCCATCTCGATC
GTCATCTTTTACAGCCGCGGAATGGAAAACGCCGAACGCGCGTTGCTGTA
TTATCCTCCCCGCAGGTACAGCTGAGCTGGCGCGAGACCACGGAGCTCCT
ACGTGTTGTTCTGTTGTTGTTCTCGCGCCCGCGCGTGTTTCCTTCTTGGG
CGCCGTCCTCCGCTGTACACCGGATGTTGTTCTCTTAGCAGGACAGAGAC
AACACACCCGGGGATGACCCTCGCCGCAGCGGCCAAGTCCTTGTTCGGAC
CCCCACCCCGACCAAAGATGCCCGACTGGCGCAGCGAGCCAGAAGACAAG
AGGAGAAAGCCCGCCAAACACCCTTGTTCAAAGAGGGTTCAACAGCAGCA
GCAGCAGCAGGGGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAACG
ACAGGGTGGTGGTGGAGATGAAGGTGGTAACACCACCTTCAGCAGGGGTG
CTCCAGCTCGTTCGAAACGCATCTGGCCCGATCCCATGCCAGTAGAGAAA
GCTCAGCAGCATCTCGAGAAACGGCAGAGAACAAAGGAAAGGACAGTCGC
GGGTGCAGGAAGGAAAACGCGACATGCTGCAGGTTGGGATGTGTCCCGAA
GTTCATGTCCTCGACCTCCTGTCCTGGCCGTGTGGAGTACAACTTAGGGT
TCCTTGAGAAAGAGCAAGACCGAATGCGCTCGTTTACCTGGGAGAAGGAT
CGCAAGCTTTTCGTCAGCGAGCACACCCCCATAGCAAAGCTATCAAGAGG
AAGCATGCTGGCTGCGGGAAGCCCTGTCTGCAACGAAGCTTTCAAATTAT
TTTTCGGCGTATCCGAGACGCTCATCAGCTCATGCAAGGGTACCGAGAAG
GCTCGCGCTACTAGCTCCATCGGCAGGTATCATGCATACGAGATCAATTG
TCAATATATTATTAAAACATTATTATAGCACTGAGCTGCTCTGCTGCCAC
CGTTAGGGGCCAGATGAGATAAATATTTTAGCACGCTCAAGCAGAGGCTG
CCCCGATACGTATGTCGGCGCTGCGTGATGGACTTGTTTATCATTATCAT
TCCCACTCAAGAAATATACAAGGTAAACTTTGATATTCACTTTGATATTC
ACACCCGGGTAACCCCCCCCCCAACTGCTGTATGTAGTATTATCATACGC
CCCAAATCCTCCCCTTCACCGTAGCGCCGTCAAAGACCGGAAACCCACCG
GGTGTCTAAACCTGAATGAACTTGCCTTGAACTAACGACGCGCTCACAAG
AGGCTTAGAACTGCGAGGCCAAGGTGCTCACAATGAAAAACAGTGGGCAG
TATTGACGCCTTCACTGGGCAGTAATTGCGCCTTCACAGCAGGAAATAGG
CCGGAAACGATTCTAGAGTTGTTGTATAAAAATTCGCCGATATTACCGTA
AACATCGGAGTTTTCCCCTTGGGGAGGGAATCTCTTTTTTTGCTGAAATC
AAACCGTCCGGCCCCAAAAAACTTCAATAGGCGCGCTTTTCCTGGTGATT
TTTGTTTTCGCCTCCACACAGTGCTGCATGTTTGTGCTGTGCCGTAACTC
GATGTGCGGCCTGCGTTATTTTGCGGGATGAAAACACCTTTGTACGACGC
GTCCTTCGAAATTGTTTTTCCTGAACGCGCTTCTTAAAGTCTACGTATCT
CCCTGCTACTTTTTTTGAATGTCTCGCGTTCGCTTATTCAGAACACCTAT
CCGCGCGTCACGCGACCACCCGAAGTTGGAGCGCGTCGTGGCATTCCTCG
TGCGCCACGAACATATCTTCGCTCAGAAAATGCCCCACCAGGATGAAAGC
TACTTGTACCTCCACTCCAAGAATGTGGGTCCCGCCTTGGGGTCATGACC
TACCAAAACCCCGTCTTCGCGACTTCCGACCTGGAAAACCTGGTCGTCCA
TAGCTACATGTGTGTGTGACTGTTCAATTATTGATGCTTGCGTCTCGTAT
TATTTTCGAAGTCCTGGAGCGGAGAGCTGGTTGCGTCATCATTGTTTTGT
TTACGTAAGGGCGAATACGTAAACGTGTCGATAAACTGAGGGCTCACAAG
CAGGCCCCTTGTCCCTCAACACGCTTGCTTCGTCTTCCTCTTCGTTGACA
CATACGAAGGAGCTGTACAACGATTACCTCAAGGATCAACGGGATTTCTT
CAAGGCCGACCCAGCCAGCATGGCCACGTTTGTGTGCTCCAAGGACTACT
TTAACAAGGTATGGAGGTGCTACTTCCCCACGCTGAAGTTGAAGCCTAAC
GGCGACTTCATGCTTTGCCAGACCTGCGTTCTACTGAAGGAAAAAATTCA
CGGCACGGCCGGTTCCCGGGGCATCCAGAACGAGGCGGAGAGAGAGGAGC
ACTTGCAGCAGTACGCCGAGCATGTGGAGGTAGGCCGGGCACCGGAAGTT
GGTAGTCCAAACTTAGTGTTGCGCGATATTACCCGCAATGTCACACAAAC
CATTTCAGATAATAGTTTGGGTTCCGTTTTCGTGCTTGTGTGTTTCTGTT
CTTGCCGCGTGTCTGCAGGAGGTTAGCCAGGATCGCCTAACCAGCGCCAC
GTTCGCGAAGTGAGCGGAGATCGCACTCATGAATGGCGTCCCGTGGGAGA
AGCTGTACTTCATGGTGGATGCCGCGAACCAGAGCAACTTCGCGACGCCG
CTCTCTGCCAGTAACGCCCATGGGATAGATGACAAGTAAGTGCCAACGGT
CATCGTGCAGGACCTGTCACCACGATGAGGTGCGCTGGTCGAAGGTACGG
CGAAGCCTCTACAGTTACAGTTTATTTAGTTGTCCCCCCCCCACTCTTTT
TCGGGCGCTCCATCTTGAACTCAATTGAGGGTACATACATACGGTCAACT
TCCGACGTCGTTGTCGGATCTGTCCGTGTTTCACCAATGCTTTTTCGGTC
ATATGTACGAATATGTGGAGAATATATGGAAGGATACTTTTTGGCGGGTT
TGACCGGCACCGCACTACAACGGGGAAGTTCCCTCTCTGTGATGGTGTTG
TTTTTTGCGCACACCACGTGTGTCTCCTTGTTTTCTTTACAAATAGATGT
TGCGCACCCCCCCTCGCGTCCCCGTGTACATGGGGTATGCTGAGCGGCAG
AAGATCTACGGCGTTTATGTCGTCGGAGTCAGCATGGATGTTTTCATGGC
CCCACAGATCCTGACCACAGGTACGCGCAGCGCTTTCGTTTTCCTGTGGC
TACAGGCTTTGCTGACTGTTCGGGTGTCGCTTTGGCTTATCGGCGGTCCT
CTTTACCCTGTAGTAGTGTTGACGGACGATAATCGTTATGTTTTTTGTTG
TGTTGCAGTGTGCATCCAAGAGGGAAGTTTTGTGCGCGTAGGTCCTACCA
GCGTACGACAGCAGTGCCAATCTTGCCCGAATATCTTATTTTCAAGCCCG
CCGAAAACTTCATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1197:13225..16738-

>mRNA_P-littoralis_Contig1197.10.1 ID=mRNA_P-littoralis_Contig1197.10.1|Name=mRNA_P-littoralis_Contig1197.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig1197:13225..16738- (Pylaiella littoralis U1_48)
ATGTCCTCGACCTCCTGTCCTGGCCGTGTGGAGTACAACTTAGGGTTCCT
TGAGAAAGAGCAAGACCGAATGCGCTCGTTTACCTGGGAGAAGGATCGCA
AGCTTTTCGTCAGCGAGCACACCCCCATAGCAAAGCTATCAAGAGGAAGC
ATGCTGGCTGCGGGAAGCCCTGTCTGCAACGAAGCTTTCAAATTATTTTT
CGGCGTATCCGAGACGCTCATCAGCTCATGCAAGGGTACCGAGAAGGCTC
GCGCTACTAGCTCCATCGGCAGAACACCTATCCGCGCGTCACGCGACCAC
CCGAAGTTGGAGCGCGTCGTGGCATTCCTCGTGCGCCACGAACATATCTT
CGCTCAGAAAATGCCCCACCAGGATGAAAGCTACTTGTACCTCCACTCCA
AGAATGAGCTGTACAACGATTACCTCAAGGATCAACGGGATTTCTTCAAG
GCCGACCCAGCCAGCATGGCCACGTTTGTGTGCTCCAAGGACTACTTTAA
CAAGGTATGGAGGTGCTACTTCCCCACGCTGAAGTTGAAGCCTAACGGCG
ACTTCATGCTTTGCCAGACCTGCGTTCTACTGAAGGAAAAAATTCACGGC
ACGGCCGGTTCCCGGGGCATCCAGAACGAGGCGGAGAGAGAGGAGCACTT
GCAGCAGTACGCCGAGCATGTGGAGGAGGTTAGCCAGGATCGCCTAACCA
GCGCCACGTTCGCGAAGTGA
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