mRNA_P-littoralis_Contig78.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.49.1
Unique NamemRNA_P-littoralis_Contig78.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:206087..212670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size197
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791604.0313754-CDS-P-littoralis_Contig78:206086..2061641680791604.0313754-CDS-P-littoralis_Contig78:206086..206164Pylaiella littoralis U1_48CDSP-littoralis_Contig78 206087..206164 +
1680791604.0424178-CDS-P-littoralis_Contig78:212553..2126701680791604.0424178-CDS-P-littoralis_Contig78:212553..212670Pylaiella littoralis U1_48CDSP-littoralis_Contig78 212554..212670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.49.1prot_P-littoralis_Contig78.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 206087..212670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.49.1

>prot_P-littoralis_Contig78.49.1 ID=prot_P-littoralis_Contig78.49.1|Name=mRNA_P-littoralis_Contig78.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
MLVVKDIDVTKQGVTNKVRVDYQQGRPPVDPKELGIKLKNLFSRYKTNFD
KEEKDSAKLTGEGTA
back to top

mRNA from alignment at P-littoralis_Contig78:206087..212670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.49.1 ID=mRNA_P-littoralis_Contig78.49.1|Name=mRNA_P-littoralis_Contig78.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6584bp|location=Sequence derived from alignment at P-littoralis_Contig78:206087..212670+ (Pylaiella littoralis U1_48)
ATGCTTGTGGTGAAGGACATCGACGTGACGAAGCAAGGCGTCACGAATAA
AGTTCGCGTGGACTATCAGCAAGGACGGGTGAGAGCGTGTCTCTTATGCG
CTGCCATTTAGACCAGCAGTCGTGGTGGTATAACTCCACGCACGTACCGT
GTATGACACGACTGTAAGTCCCGCGGAGCCTTGGAACCATTACTGTCGAC
ATAGTTCACATACTTCCACACGTTTCCATATGGGTTTTACTTTGCACGCT
GCCAGCTGTCGTAGAATGAACAAGGTCTTTCAGCCGACTGAGCGCCAATT
CTCCCAAACATGTGGCCACTTACATTTCCGTTAGTAATGTGTCACCGAGG
TAGTTTTGCGTCCTTACGTCCCCTGCACCAGCTATGGTATTTGTAACACT
CATAGCTAAATTGGGTCAACCAAAAGCCTTCCGCACACACACTTCGATTT
GCGGCCGCAATGCCTGTTTACTTGATAACCAGCCGCCCGTCGACCCGAAG
GAGCTGGGGATAAAGCTGAAGAATCTTTTTCGCGCTACGGACAACTTCCC
GACAAGGGGAAAGACTCGGCGAAGTTAACCGGAGGGGACCCGCAGACAGA
GGAACGCAGCGAAATGGAAGACGATTCTGGTGACTGACTGCGAATATTAA
CCTGATGCTAGCATTTCCTTTGTACCAGTAGCTGGCTCCCAGGCCTGCGT
GCTCATCACGTGCGGAAAGCCCTTCGCCGTGTCAGATTGCATTAGGCTTT
GTTTGTAAAGTCATTTTCTGTTATACTGAACGCTTGTCTTGCGTGAACCA
ATTGCCATCAAATTGGAACACACGGCCCAACATCGCGCTTCTTGTCGAGG
GCAAAAACATTGCCAAAAACCAAAATAATTGTTAACTTTGTAACCTTGGT
GAACCATTTGTTGAACTAAGGGCACAATTCATTTGGAAGGGCACGTCGTA
GTCTTGTCCCACTCTTATCTGAAAACCGCATTTGGCTAACCCTCAAGTGG
AATGTCCCACACTGAAGTCGGTATGGCGAACTTGCGGAACGAGTGGCGCG
AATCAAAGGAGTTGTCCCGACGCACCCGGACTGAAAAATGAAGAAGGCTT
TTAATTTAGAGTTAGTCGACCCACAAGATGATAAGCAGTAACATCCAGAA
TTGCGTGCTAGAGATCGTCCAACCGGACACGACTCTGGCGCCATTTGCTA
CCACGTCCCACCTGTGCAAATAAACACTCGCCACCACGTACGCTCTTTTG
TTATATAGGTGTTCAATGCCGTGTTGTGTTTGTTATTTGGACCATTCACA
ACGCCAACAACGTACATTGGCCTCTGGTGAACATGGCCACCTATTGTAGC
CACCAATTCGAAGTGAATGTCTGGACATACACAGGAATAATCGTACGAAC
AAGTCGACATCACGCATAATCGCCGACGTGTCCCGAAATGTATGATATGT
TCACCAAATTGTTCAAAACACTTTTGCTTTTACCACCCGATCTGTGCAAG
AAAATGGAGACCTCTTCATGGCCATAAAAATGCAAAAAGTCGACTCATGA
GACTCGTGTAGGGAGAGCGGCAACCACGAGGGAACAGCGGAAGGGAGGCA
CGCGTACGAGGGACATCGCAGCGCTGTCGATGTCGGTTGGCGGTGGTGGT
GCTGCGGCCGGTGGACGTCGCGGTGACGCGCGTGAAGTGCCGTACCCAGG
TCCTGCAGTTCGAGGAGGCGGTCACGCACGGCAAAGGGAAGGAGGCGGCC
GTGGTTCGAGGGGAGGCGGCCGTGCTTCGAATGGAAAGGTAAGGCTGTTT
CACGTTCTCGTGGCCCCCGCTGGTCTAGGGCCCCAGCCTTGTGCCTCCCT
CGGGTTCGCAAGGATCTGGCGCTGGTCCCGACCTACAGCAGTTCAGGGTT
CGGGCGATGTGCGGAATACCAAATGTTTCAGCCGTGGCTCCAGCAGCGCC
CAGAGTGGGCAGGGCGCAACGAGCGGGGCGGGAGGGTCAGGGCATGTAAA
TGAAGACGACGAATCCGAGCGTGAATCCGCCCAGATGGCAGCTGACGACA
CCGAAGCAGCGGCCCTTTCGGGTACTTTGGGTAAACAACGCGGTCAGGAC
GAGCTCGGAAGGACGCGTGCAACGGTATCGTGGCGACCCAGCGACCGCTG
ACGCGGCAACACATGGGCGCAAATCAGCTCTGTCCTCAGCATGGTGGTGA
ACAAAGTACGCTGACCCAGACCGGGGTGGAGCTGGCAGCGGGGGGTGGTT
TAGGAGGCGCAAGCGTGTCGGAAATTGGTGGTGGACCTGGGGACATCGCC
GACGAATTCTCGCCTAACAGCATTGGAGGACGGGTGAAAAGCATCCGGAT
CTTCTACTCAACAGCAACTTAGAGGGTCATCAGCCACCCGCCGCCGCAGA
TCCCAGCATGGCCCCACCGCAATGGGGCCGCCAGAAGGCGCCAGAGGTCC
CTACCATCCCTCTTTTGGCGGAATGGCAGCAGCAGGTGGACCCATGGCGA
GAGTTCAGCAAAATATGCCTGCTCCATCTGCCTTGCCTGGGTCGGGAGGT
GGTGGGTCAGGCGGCGGGTGACGGTGACGCGCAGGGCCGACGTGGTGGAA
GTCCTGCAGCTATTTTGCCTGAATCTGGTATCGTAGAGTCTCCTGCAGGG
ACAGTTCGTCCTCCGGACAGGCTGTTTGCCTGCCACTCCTCTTCCTCCCG
GACGGTTGCAGCGGGGAGGCGATGCAGGGGGCAGTGATTCGGCGGCGAGT
ACGACAGGCGCGCAGCACGCCCCGTGGCTCTGCGCCGGGTGTTTCAGGAG
CAGACGGCAGGATACGAGGTGGGCCAGGGACGAGGAGGCAGGATCATCCG
AGGGTCCTCAGAAAGCCACAGGAGCGGCAGGGTAGCTGGTGGTGCTGCGG
GAGGTGGTAAGAGGCGAAAGATAGGAAAACAGACGGAAGGTGTCAAAACA
TCAGCCCCCGTGGAAGTGAAAGTAGATGTTGCCGTCACTGAGGGTATATC
GTGTGTGTTAGCCCTCGATTTGTTTATGTTCGCGTGCGGAGTGGCACGCG
AGAAGCACGTCATGGTTAACAATAGGCGTGTAGATGACATCGGTAATATT
TCGAAGTTCCTGCTTCGCATTCCAGTTTAATATATTGTTGACTGGTTTTT
GCCTACCCTTACTTCCTATTCGCATTTAGATCGCTTCCTGTGGTCTGGAA
TTTATGTATAACTAGGGTCAGCGATTTTTGAAATAAGTATCGTTGCGCTG
GCTTTGATCCTTACATGGATTGTTGATCCTTACTTGCGTTTTTGGTGATG
TGGGTGTGCGACGCGTCACCTGGACTTATTGGAAACCGTTGTCCTTCCTC
GCAAACGACAAACTGGGTGGACGTGCGCACCATGTTTCAATTGTGTGCGT
TTGCTCGGGTTAGTCTTCTGAGCAAAAGTTGCCCCCTGTTGCGGTGTGAA
CATAGGCGTGTACCATTCCGTGCAAACTCCAGCGGCTTGTGTTCCGCTTT
TTCTGGCCGGTTGCAGGTGCGCAACGCGCTCGGTATTGCATATGAGGTGG
TATTGTTTGTACAGGGCCTGTCAGACTTTCAGGATAATAAGTAATGGGAA
AGATTTATCCATTGCCTTTGTTAAACCTCGAATCCCGCGTTTTATGTTTT
ACGGTGGGGGCACAACAGTTTTCTGTTGTTGTTGGCGTGCGCTGCCAGTA
ATCTCTAATTCAATGCTTGTTTCCAGCCGGCGACGCTTTGGGTTTCAAAG
GATTATATTGTAACCGCGACATCCTTTTTTTCTGTTGGAACTGTGTGGCT
AGTCTCCTTTCTCTTCATGCAAAACCCACGTTGGGGCGAAAGAGGTTCGT
AGTGTAATCGGCGTATGGGCGCATCACTTTTTACCTTGGGTGCGTGCTCC
AAGTCTGCCCTATGAAGACATGGCTAGGGTTATTTGAGGATGTACCAATG
AACATTTTCGGTCAAGGCTCTTCCATGCGCTAACTGTATCGAAATAGACA
AACAAAATAATAAGTCTCTTGCGCCCCCTCATGAGGAGGAACGTTAGAAA
TTGATCAAAGGAACTGCTCAGATCATGATAACACTGCCCGATGAATCCAT
CGCACGGCGCGTTTTTGATCTCACTGGATAGAATTCTCGGTGTACAACCC
ACGCTGCACTTCAAGCCGGGTATTTAATAATTTTTGACGAGGGTTCCGAA
GCAGGAGGCATTTTCGCGACCAAGTATCACTTATATGCAATCAATTGACA
GGCGAATACGCCGGGCACGACAGAATGTCATGTGCGCCACCATACTGTAT
GCTAAAATGCAACGCGACCGAGAAAGACATACAGAATACTCAACAATTAC
ACCTACGCAAGCATGACCAACCGCCCAAGAACAACAAATATATCACCCTC
TCCCTGCAAGTACTGCCGCAGGGTAGGAGGCATGACGTTGAAAAACTTCG
ATGTCGAGTTCCGTAAAAACAGGTCGAGCAGTTTGTCAAGATACCTGCAA
TCTGGTACTGCTACAAGTCCACACACTAAGGGCGACTTGTTGCTTCTTCG
CGTAGTCGACGTACGGCCACAAAGCCACTACCCGCCGAAACCCACTCTGC
CACCGTGATCCTCTGGCGCTCATTGCTGTGTTGAAGGCCTGTTGAGCCGG
TGTGGGCCCCGAGAATGGGGTCATCGCAAGGCGAAATCTAGTAAGCAGGG
TCCCCGTATATGCAATATGGAGTTCTGCTGCGTCGTTAAACCATTGCTGC
AAGTACTGCATAAGACCACTCGCTCCCCAACATGGCAACGTCATTGGCGG
CGACCAAACATAAGACCCCAAAGCATACATGTATTCTGACCGCAGGTCTA
CAGCTTGGTACTTCAACGCGTGCTTACGCTTCCAACCGTTGTACCCAGAG
TCTCTGCATGCGCCATGGGCGTGCCATCCCGCTCGAACGGTTCCGATCGA
TAAATCCCCAGCATCGATCTAGGGGGCGCACCGCGATGTTGATAGCCTGA
CAGAACATGTCGATTTTTAGGCAGGAATAGCTTCGTGCTGCAACTGGCTA
ACTTCGATGCTATCTTTCGTGAATCGCTTCTATGGTGAGATTAAAGATCT
CGCAGATGTACGCTCCTGATAGACCCCAAAAGAGCTTGTCGCGAATCAAA
AATGGTGAGGGCAGGCCAACCGCCAAAAACGTCACGGCCAGGGCCAAAGT
CCATGCAATTGTTGAGATTCCGAAGCCCCCTCTGCACAGAAAATAGTGTC
GGACGCAAAGGCACCCACATGACGAAAGAAATATAGTGAGGATGGTGGAC
AATGAACAATAGCTTTGCCCCAGTTCCCACTGCTGAGGAAAGATTTATTG
CGGAGGGTCGAGTTCGGACGGAGACGAAAGCCAGGCAAGCACATCGACGA
CGAACGAGCCAGCTGGAAAGCCTGGTGAGAGACTCAAGGGTCTGAGTTCG
TGGATACACCCATCACATATGACACATGAAAGTTGATTTAGGGTACATCT
ACTGCTGTACTCATATCGCAGTCGAACGTATATCATGGCCTTGTGATCAC
CTCTGATACAACAGTTCCAAAACTATATCATATACTTCGAAGTATCATCA
AAATTCAAACACCTCTTGGATACGGTACTGCTGTAAGAGTCCGCTACTGC
TTGAGAGCTACTGCTGTTTTTTTGGCGTGACGGCAAGTGTGCTTATATGA
TGCTGCTGAATGCATGATAGTCTGTGTGGTGCCAGTTAGCCGGTGGATAC
GAATGATTTCAGTGGAAAGCCTCAGAAGGGAGGTAGCCTAGATTTCCTGC
TGTGGTTGAAACTTTGCTATACAGCAGTCGATATTCTGTCCGGATGTCGA
TCCGACAACAGACTTTTTCATGATCTTGTATCATATTGCTGTAATCTCGG
TCATGGGCCGAATAATAGCAACTCCGGTTGTGAACCGCAGTTGATAATAC
CAGCAATACTAGTCCGGCTGCGCCAATCGTCGCAAAATATAAGACTTTTA
TCTGGCATGTTTCATATGGGAAAGTGGACTATCAGCAAGGACGGGTGAGG
GAGCGTGTGTCTCTTATGCGCCTATGCATTTTAGACCAGCGGTCGTGGTG
GTATAACTCCACGCACGTACCGTGTATGACACGACTGTAAGTCCCGCGGA
GCCTTGGAACATGCATTACTGTCGACATGGTTCACATACTTCACACGTTT
CCATATGGGTTTTACTTTGCACGCTGCCAGCTGTCGTAGAATGAACGAGG
TCTTTCAGCCACGACTGAGCGCTTCCAATTCTCCCCGACATGTGGCCACC
CCACATTTCCGTTGGTAATGTGTCACCGAGGTAGCGTTTTGCGTCCTTAC
GTCCCCTGCACCAGCTATGGTATTTGTAACACTCATAGCTAAATTGGGTC
AACCAAAAAGCCTTCCGCACACACACTTCGATTTGCGGCCGCAATGCCTG
TTTTACTTGTGCTCCAGCCGCCCGTCGACCCGAAGGAGCTGGGGATAAAG
CTGAAGAATCTTTTTTCGCGCTACAAGACCAACTTCGACAAAGAGGAGAA
AGACTCGGCGAAGTTAACCGGAGAGGGGACCGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig78:206087..212670+

>mRNA_P-littoralis_Contig78.49.1 ID=mRNA_P-littoralis_Contig78.49.1|Name=mRNA_P-littoralis_Contig78.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig78:206087..212670+ (Pylaiella littoralis U1_48)
ATGCTTGTGGTGAAGGACATCGACGTGACGAAGCAAGGCGTCACGAATAA
AGTTCGCGTGGACTATCAGCAAGGACGGCCGCCCGTCGACCCGAAGGAGC
TGGGGATAAAGCTGAAGAATCTTTTTTCGCGCTACAAGACCAACTTCGAC
AAAGAGGAGAAAGACTCGGCGAAGTTAACCGGAGAGGGGACCGCG
back to top