mRNA_P-littoralis_Contig78.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.39.1
Unique NamemRNA_P-littoralis_Contig78.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig78.39.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.440e-13
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    4 LQAVMDRQKKRAGEGDNVDYVLARTVRCILQYNAPLLSKRRGGGNQCQRGACFKEAIDMFSGIKMEG 204
            +Q V+DRQK+R  +GDNV YVLARTVR ILQY A       G GNQC+RG CF  A+ MF G  MEG
Sbjct:  145 IQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEG 211
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BLAST of mRNA_P-littoralis_Contig78.39.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.050e-7
Identity = 31/50 (62.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 LQAVMDRQKKRAGEGDNVDYVLARTVRCILQYNAPLLSKRRGGGNQCQRG 153
            +Q V+DRQK R  EGDNV YVLARTVR  LQY A       G GNQC+RG
Sbjct:  112 IQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.440e-1359.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI6.050e-762.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:179912..180886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size975
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.8634245-UTR-P-littoralis_Contig78:179911..1806521680791603.8634245-UTR-P-littoralis_Contig78:179911..180652Pylaiella littoralis U1_48UTRP-littoralis_Contig78 179912..180652 -
1680791603.8878279-UTR-P-littoralis_Contig78:180871..1808861680791603.8878279-UTR-P-littoralis_Contig78:180871..180886Pylaiella littoralis U1_48UTRP-littoralis_Contig78 180872..180886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.8747919-CDS-P-littoralis_Contig78:180652..1808711680791603.8747919-CDS-P-littoralis_Contig78:180652..180871Pylaiella littoralis U1_48CDSP-littoralis_Contig78 180653..180871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.39.1prot_P-littoralis_Contig78.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 180653..180871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.39.1

>prot_P-littoralis_Contig78.39.1 ID=prot_P-littoralis_Contig78.39.1|Name=mRNA_P-littoralis_Contig78.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MDRQKKRAGEGDNVDYVLARTVRCILQYNAPLLSKRRGGGNQCQRGACFK
EAIDMFSGIKMEGTTPVKLSWH*
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mRNA from alignment at P-littoralis_Contig78:179912..180886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.39.1 ID=mRNA_P-littoralis_Contig78.39.1|Name=mRNA_P-littoralis_Contig78.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig78:179912..180886- (Pylaiella littoralis U1_48)
GAGTTACAGGCAGTCATGGATCGGCAGAAGAAGAGGGCGGGAGAAGGCGA
TAACGTAGACTACGTTCTGGCGAGGACTGTGCGGTGCATCCTGCAGTATA
ACGCGCCGTTGCTATCGAAGCGAAGGGGGGGGGGGAACCAGTGCCAACGC
GGGGCTTGCTTCAAAGAGGCCATTGACATGTTTTCTGGGATTAAAATGGA
GGGCACAACCCCCGTGAAGTTGTCCTGGCATTGATGAGGCACTAACACCC
TGATAACTGTTACTCCGGAGTAATTTCTATAGAGTTATAGAAAGAGACAT
GCGGGTGGGGTAGGTAGTTCGCGGAGTTGGATGTTGGCAAAGCGTTGAAG
TCAGTCTGCGGGCTGAAATGTGCGCTAAGTTGGGCCGCGTTGAGTGCAGG
GATAATTTGATGGCCAGGTGTGATGGTGAGGGCGTTGGAACTGCTGTTTT
GTGGATGGTATCGTCTGTCCAGGCAGAGGCATTGTAAGCGATCGACGACA
ACGCCGGTTTAGCATATTCGTGGCCTAAAATGACCGTGCATTTGGGTTAG
CCGGCTTTTTGAGGGTGCGTCGTTCTACCCATACTTGGCAACTGAGGCAC
TCGAAGATTTATTGGAGAAAATTTGAAAAGTTCGACAAATAAACGTTTCG
TATCAAACAAAATCGTATTTTGTTTTGGAATCGACAAATATGGGAATATA
TATACTCTGGCCCAGTGCCGAGGAAGCTTTTCCGTGTGTGCTTAAACGTG
CCTTCTGTGATATCGCCCCGTTGGACCGTGCGATGTACTCGTTGCGACAT
TGTTGCCCACACAAACGTTGCACACACCAAAATGGTAGGAATAACTTGTA
CGTGTGAAATCGAAGGTTTGCCTAAACAATTACAAGAGTACCATACCAGC
TTCCACACGGAAAAACCCAAGGGATACAAGGATGGGACGTTTTACAAAAA
AAAATACTAAAAGGGGATATTTTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:179912..180886-

>mRNA_P-littoralis_Contig78.39.1 ID=mRNA_P-littoralis_Contig78.39.1|Name=mRNA_P-littoralis_Contig78.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig78:179912..180886- (Pylaiella littoralis U1_48)
ATGGATCGGCAGAAGAAGAGGGCGGGAGAAGGCGATAACGTAGACTACGT
TCTGGCGAGGACTGTGCGGTGCATCCTGCAGTATAACGCGCCGTTGCTAT
CGAAGCGAAGGGGGGGGGGGAACCAGTGCCAACGCGGGGCTTGCTTCAAA
GAGGCCATTGACATGTTTTCTGGGATTAAAATGGAGGGCACAACCCCCGT
GAAGTTGTCCTGGCATTGA
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