mRNA_P-littoralis_Contig78.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.16.1
Unique NamemRNA_P-littoralis_Contig78.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:75815..77756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size453
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.3793101-UTR-P-littoralis_Contig78:75814..759321680791603.3793101-UTR-P-littoralis_Contig78:75814..75932Pylaiella littoralis U1_48UTRP-littoralis_Contig78 75815..75932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.3934822-CDS-P-littoralis_Contig78:75932..759601680791603.3934822-CDS-P-littoralis_Contig78:75932..75960Pylaiella littoralis U1_48CDSP-littoralis_Contig78 75933..75960 -
1680791603.4039211-CDS-P-littoralis_Contig78:77451..777561680791603.4039211-CDS-P-littoralis_Contig78:77451..77756Pylaiella littoralis U1_48CDSP-littoralis_Contig78 77452..77756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.16.1prot_P-littoralis_Contig78.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 75933..77756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.16.1

>prot_P-littoralis_Contig78.16.1 ID=prot_P-littoralis_Contig78.16.1|Name=mRNA_P-littoralis_Contig78.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
PGGDRVVHEQLKFVAEHHTARTRAFATTASRLVGRLHCSHGVEKPEPLLV
IKNRDERRKAARDHPGTCGVHQAELIAAVSMESVKATAEKRGSVRTRPSA
MRRATMRRVL*
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mRNA from alignment at P-littoralis_Contig78:75815..77756-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.16.1 ID=mRNA_P-littoralis_Contig78.16.1|Name=mRNA_P-littoralis_Contig78.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1942bp|location=Sequence derived from alignment at P-littoralis_Contig78:75815..77756- (Pylaiella littoralis U1_48)
CCAGGTGGCGATCGAGTTGTACACGAGCAGCTCAAGTTTGTGGCAGAACA
TCACACGGCTCGGACCAGGGCGTTCGCTACAACTGCAAGCCGCCTTGTGG
GCCGGCTACACTGCTCTCACGGCGTGGAGAAGCCCGAGCCTCTCCTTGTC
ATCAAAAACCGGGATGAAAGACGCAAGGCGGCGAGGGACCACCCGGGCAC
CTGCGGCGTGCACCAAGCGGAGCTCATAGCTGCTGTCTCGATGGAGTCTG
TGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAGACCTTCCGCA
ATGAGGTGTGTGAAACAGCTGAGAAATCGAGTGCGTCGGATCATCATGAT
GTGCAGCGTTAGCCGCAGCACATGCATGCACAAAAGCAGAGATCAGCAGC
AGTACTGCTACAACACTCGAAGTACTTCACGAATCGTGCGCTCCTGTCTG
TGTTGACCATTCTCTTGTGTTACCCCGCCTGGTGGTCCCTCAGAACACTT
CGCACAGCAGCATACAACGGCAGTAGCTTCGCGTCCGAGACATGTGGGAC
TACAACACGCATCATACCTGGTAACAAAGACATACCCACACATGAACCAC
AAAAAACACACCCAGACACTAAACGCGGTATATACTGCTGTAGCAGTGCT
GTATGCGGTGTGCTGACTGCGGCGTTGTGTGCGTGCACGCCGTACTCTCT
CCCTTTTCTTCTCTACCTTCACCTCCCTCTGGGATTGCACGCTCCAGTTT
TGAGTATGCGTATACTCTACTACCTGTCTTGCAGTCTCTGTTGCTGCCGT
ACGTTTGTCGTGCTTTGTGCGGTAATGTGTGCTCGGCCCTCGCATGGTGT
TCTCGATCGCTTTCTCTCTCTTTATATTCATTTCGTGTGCTGTTTGTCTG
CCGTAGCAGTATATCTGCTGCCGAGAGAGACAGGGAGAGAGAGAGAGAGG
CATACCTGTGTGCGTGATTCGCATCAATGTTGTGTGCTGGTCGCTACAGG
AGTACGTACTGCGATTCGCTGTGTATTCGTGTTTGCTTTCGACTGATGCC
GCTGTCCTGCGCTCTGCCTGTGTGCTGCTTCGGTACTGCGGCCCGATGGG
CCCTATAAACCTATAAACCTACGTCTGTGCCTGCTGTCTTGTTTGCCGTT
GACCTTATCCCTTTGTTATTTGTGCTCTATGTCCAAAGAAGTGGTCGGCA
GGCATTATTGCAGGGTTTCTGGTGTTTAGTTGCCAAGGCGTTATGGCAGG
TGCAGCAAGTGCAGATAGGGGCTGCCTAAAAATATATCTTCTGCCAAGTC
ATTTCAAACCTTCACGCCTGTGGGTGCACCCTACTTGTCTCTGCGCGAAA
AGTATCGTGATGGAACAGCGTAACCTCAAATAGCCTCTACCCCACGACGG
CGGTAACCAACCGCCTGCAGCCAACGCGGCGCACTTTTCACTGGCGGCAG
GTCGTTAGTTCGGTGATTATTATGTTTCCTGCTTCCACATGCACCATGAC
CAAGATTCGTTATCGGGGACGACACCACGGTCTCCTCCACTTTGTACGAA
TTTCGATACGCCTCCACTACCAATAATCCACCAGCAATTTCCCTCTGAAT
GTAACATTTTAGAATCATTGTTAAATACGAATTAGGTTTGAGATGAATCC
CCCGCATGATGTCAATTTATAGTACTTATTTTTGTCAGAGGATGTTTTGC
GCAAGATTTAATCATTTTGCGCTGACGGCCTGCACTTCAAAGCCGCGCCC
TACCACAACACCCGACACTTTCTTCACCCTGCATGATTTTAAACAGGCGT
GCTACGATGCGGCGCGTTCTCTGAATGTCCAAGGCATGAGTGTACAAGTT
CGTCGCGATAAATGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAGA
AGCTCCAGTAGCCCAGTGGTGCGCGGCGGCGTTCTCGGAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:75815..77756-

>mRNA_P-littoralis_Contig78.16.1 ID=mRNA_P-littoralis_Contig78.16.1|Name=mRNA_P-littoralis_Contig78.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig78:75815..77756- (Pylaiella littoralis U1_48)
CCAGGTGGCGATCGAGTTGTACACGAGCAGCTCAAGTTTGTGGCAGAACA
TCACACGGCTCGGACCAGGGCGTTCGCTACAACTGCAAGCCGCCTTGTGG
GCCGGCTACACTGCTCTCACGGCGTGGAGAAGCCCGAGCCTCTCCTTGTC
ATCAAAAACCGGGATGAAAGACGCAAGGCGGCGAGGGACCACCCGGGCAC
CTGCGGCGTGCACCAAGCGGAGCTCATAGCTGCTGTCTCGATGGAGTCTG
TGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAGACCTTCCGCA
ATGAGGCGTGCTACGATGCGGCGCGTTCTCTGA
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