mRNA_P-littoralis_Contig78.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.10.1
Unique NamemRNA_P-littoralis_Contig78.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 8.450e-41
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:  136 AAAVKRKRGNADLEVAAADPVQAAITSGLRGGDIAPRPAKASRKPTAVEQRRAGVLEMVRKDPVLKEEMRAMLGVQGLEGVAAVHAENTRAMAASLAALQ 435
            AA VKR R NADLEVAA+DPVQAAITSG RGG+ APRPAKA RKPT VE+RRA VLEMVRKDPV +EEMR MLGVQGLEGVAAVHAENTR MAASLAAL+
Sbjct:   30 AAGVKRTRVNADLEVAASDPVQAAITSGPRGGEAAPRPAKAPRKPTRVEKRRADVLEMVRKDPVSEEEMRTMLGVQGLEGVAAVHAENTRTMAASLAALK 129
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BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.050e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:  277 VEQRRAGVLEMVRKDPVLKEEMRAMLGVQGLEGVAAVHAENTRAMAASLAALQ 435
            VE+RRA VLEMVRKDPVL+EEMR +LGVQGLEGVAA HAENTRAMAASLAAL+
Sbjct:   21 VEKRRADVLEMVRKDPVLEEEMRTVLGVQGLEGVAAAHAENTRAMAASLAALK 73
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BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5J5R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.500e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  307 MVRKDPVLKEEMRAMLGVQGLEGVAAVHAENTRAMAASLAALQ 435
            MVRKDPVL+EEMR MLGVQGLEGVAA HAENTRAMAASLAAL+
Sbjct:    1 MVRKDPVLEEEMRTMLGVQGLEGVAAAHAENTRAMAASLAALK 43
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BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5JNM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.410e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  307 MVRKDPVLKEEMRAMLGVQGLEGVAAVHAENTRAMAASLAALQAN 441
            MVRKDPVL++EMR MLGVQGLEGVAAVH ENTRAMAASL  LQ N
Sbjct:    1 MVRKDPVLEKEMRTMLGVQGLEGVAAVHTENTRAMAASLGTLQGN 45
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BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5KK37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK37_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.140e-12
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 1 
Query:    1 GTQRSRGAKIQDVAADNDEVVAVAKEHANKIRQRAESRQRSSASTAAAV----KRKRGNADLEVAAADPVQAAITSGLRGGDIAPRPAKASRKPTAVEQRRAGVLEMVRKDPVLKEEMRAMLGVQGLEGVAA----VHAENTRAMAASLAALQ 435
            GT ++ G+K+  V AD D++    +EHA  I++RA  R    A+         K KR  AD  VA +DP+  A   G R G       +ASR+  A E+RR+  LE+++KD VL E +RAMLG    +  AA    V+A NTRA+ ASL AL+
Sbjct:   31 GTTKAAGSKLSSVVADEDQLREKGREHAEAIQERASKRGNQQAAXXXXXXXSGKGKRKGAD--VALSDPLALAHDGGTRSGATP----EASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAAVNAANTRALRASLQALK 177
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BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5KQS4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.210e-12
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 1 
Query:    1 GTQRSRGAKIQDVAADNDEVVAVAKEHANKIRQRAESRQRSSASTAAAV----KRKRGNADLEVAAADPVQAAITSGLRGGDIAPRPAKASRKPTAVEQRRAGVLEMVRKDPVLKEEMRAMLGVQGLEGVAA----VHAENTRAMAASLAALQ 435
            GT ++ G+K+  V AD D++    +EHA  I++RA  R    A+         K KR  AD  VA +DP+  A   G R G       +ASR+  A E+RR+  LE+++KD VL E +RAMLG    +  AA    V+A NTRA+ ASL AL+
Sbjct:   37 GTTKAAGSKLSSVVADEDQLREKGREHAEAIQERASKRGNQQAAXXXXXXXSGKGKRKGAD--VALSDPLALAHDGGTRSGATP----EASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAAVNAANTRALRASLQALK 183
[Close]
BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Match: A0A6H5K647_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K647_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.080e-6
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:  154 KRGNADLEVAAADPVQAAITSGLRGGDIAPRPAKASRKPTAVEQRRAGVLEMVRKDPVLKEEMRAMLGVQGLEGVAA----VHAENTRAMAASLAALQ 435
            KR  AD  VA +DP+  A   G R G       +ASR+  A E+RR+  LE+++KD VL E +RAMLG    +  AA    V+A NTRA+ ASL AL+
Sbjct:   36 KRKGAD--VALSDPLALAHDVGTRSGATP----EASREEQASEERRSSALELIQKDHVLMERVRAMLGASAADQAAAKEAAVNAANTRALRASLQALK 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KLZ5_9PHAE8.450e-4184.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K614_9PHAE6.050e-1786.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5R2_9PHAE3.500e-1390.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNM5_9PHAE1.410e-1284.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK37_9PHAE3.140e-1239.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQS4_9PHAE3.210e-1239.87Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K647_9PHAE6.080e-644.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:63958..69167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.330734-CDS-P-littoralis_Contig78:63959..641271680791603.330734-CDS-P-littoralis_Contig78:63959..64127Pylaiella littoralis U1_48CDSP-littoralis_Contig78 63960..64127 -
1680791603.347289-CDS-P-littoralis_Contig78:68894..691671680791603.347289-CDS-P-littoralis_Contig78:68894..69167Pylaiella littoralis U1_48CDSP-littoralis_Contig78 68895..69167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.10.1prot_P-littoralis_Contig78.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 63960..69167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.10.1

>prot_P-littoralis_Contig78.10.1 ID=prot_P-littoralis_Contig78.10.1|Name=mRNA_P-littoralis_Contig78.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
GTQRSRGAKIQDVAADNDEVVAVAKEHANKIRQRAESRQRSSASTAAAVK
RKRGNADLEVAAADPVQAAITSGLRGGDIAPRPAKASRKPTAVEQRRAGV
LEMVRKDPVLKEEMRAMLGVQGLEGVAAVHAENTRAMAASLAALQAN
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mRNA from alignment at P-littoralis_Contig78:63958..69167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.10.1 ID=mRNA_P-littoralis_Contig78.10.1|Name=mRNA_P-littoralis_Contig78.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5210bp|location=Sequence derived from alignment at P-littoralis_Contig78:63958..69167- (Pylaiella littoralis U1_48)
GGCACGCAGAGGAGTCGTGGTGCGAAGATCCAGGACGTTGCAGCTGACAA
CGATGAGGTTGTCGCCGTTGCGAAGGAGCACGCTAACAAGATTCGCCAAC
GAGCAGAGAGTCGCCAACGTTCTTCCGCATCTACTGCTGCTGCTGTGAAG
AGAAAGCGTGGCAACGCCGACCTCGAGGTGGCTGCAGCGGATCCTGTGCA
GGCGGCGATCACCAGCGGGCTACGAGGGGGTGATATCGCACCACGCCCGG
CGAAGGCGTCACGAAAGCCAACTGTGAGTTCATGTTGTGGACCAAATTTC
TCTGCCCGCAAAAATAAACAATCTAGAGCACTCTATTCGTGGTATATTTG
CCCCTCAACCTCAACTTCGTTTTTTGATACTATCTTTAGTGCCGTAAATT
TCAGAGTGCGATAGGGGGTGATTCAAGACTAACGAAGCCGAAGACACATA
CATTTATTTTGCGGAAGCGCCTGCAGTGGTGTGGTGGAGAGACAAATAAA
AAACGGGAGACTACTTACTGCCTGTAACCGTTCACGGTTGAACCCCCCCC
ACCTCGTTAAAAGCTGGGTTTTTTTACACCCGCCCCCCACCCCTCCAGGA
CCTAGAAAATCCACACCACCGACGACCCCCAATTTTATTTTAATTTTTGA
CCCAGCTTTGCAGCACAACATCAACCCCAACGATAGGGATAACTCCGCGC
GGAGATAAGTGGTGCCTCTCAAAATTACGCTCGTGATCGACAGTGGCATG
TACATCAGGGGATGCCTCCTGCAGAGAAGTGTCAATGTCTGTGTAGTACG
GCGGAGCGCGGAGAGCCGGATCGATGATGGGATACACACACACGCTCGTC
TCGCCGCAAAACACACGAACTTTTCATTTCTCTGTTGGATGCACGCTTGC
GTGTATCTAACATTCTCTAGGGCACCGCTTTCAGAGCCGGGATTAACGGA
AGGCCAAAAAAAACGAAATAGCGAAAACAAAAACGAAATTGGGCTCTGAC
TGGTCGGAAAAAAAAAACAAAAGAGAGAGGCGTGTTTTCGTTTCGACGTC
CTCCGGGGAGGCGTTCCTTCGTTTTCGATTTCGCAAAAATAAAGTGTTTC
GGACCTTTGTTTTTGCAAAAAACGAAAACGAAATGCATGGAGTTTGGTAA
CAACCTGGGAGGCTTGCCCATGAGCCTCCCAGGCAGCGAACTCCTTCACA
GAGACTGCGACTGCGGTACACGGCGGTGCAATAGGCACCAAGCCGAACAG
AGCGAGGCCCAATCCACACACTACAGCAGCGCAGCACACAGCGCCAAGCC
GTCATACCCGCCAGTCAGTGCAACAGACAGCACACGGCCGTCTACTATAC
CCACACGCTGACACGATGCATTCCACCGCGTTATTTGAAATTGGGCCCCG
CGCGCTCTGGATTTGAATCATTTTTGGCGTTATCTCCTCTATTTATTCCG
CTGCTCCAGCTCCTCGCAGCAGAAACGCGATACCGCAATGGAGTTTTTTT
ATTTTTTTTCCTGAAGAACGAAGTTATTTCGTTTTTGTTTCCGCTATTTC
GTTTTTTTTTGCCTTCCGTTAATCCCCGCTCAAAAAAAACGAAATAGCGG
AAACAAAAACGAAATAACTTCGTTCTTCTGGAAAAAAAAAAAACTCCACT
TCGGTATTAACGCGTTTCTACTGCGAGGAGCTGGAGCAGCGGAATAGAGG
AGATAACGCCAAAAATGATGTAAACCCAGAACGCGCGGGGCCCAATTTCA
AATAACGCGGTGGAATGCATCGTGTCAGCGTGTGGGTATCGTAAACGGCC
GTGGTGTGCTGTCTGTTGCACTGACTGGCGGGTATGACGGCTCGGCGCTG
TCTGCTGCGCTGCTGAAGTGTGTGGATTGGGCCTCGCTCTGTTCGGGTTG
GTTGGTGCCTGTTGCACCGCCGTGTACCGCAGTCGCAGTCTGTGTGAAGG
AGTTCGCTGCCTGGGAGGCTCATGGGCAAGTCTCCGAGGTTACCAAACTC
CATGCATGCATTTCGTTTTCGTTTTCGCAAAAAAAAATGTCCGAAACACT
TTATTTTTGCGAAATCGAAAACGAAGGAACGCCTCCCCGCAGGACGTTGA
AACGAAAACACGCCTCTTTCGTCTTTTTTCCCGACCAATCAGAGCTCAAT
ATCGTTTTCGTTTTCGCTACAGGCGCCATCCTCCGCAGTTAACAGCAATT
TGCTCTCCCCAGCTGAAAAAAAAAGAAAATCAAAAATCGTTGTTTTTTCT
CGCTTTGAAACGCTCAAAACCGACGTCTAAAAAGTTGAACAAAATAATTG
GTTCGGGAACCCCTTCATTTTCTTTTTCGCCGCATTCCCGAACTTTTTTT
CATCGTTCACCGCGGCAATCGCTTCCGCTTGGCCGCTTTAGGGGGGGTAT
AGCCACTCAGAAAGTTGCTCGGACCAAAACTCAGGGGGGCCGGTCAATTT
TAAGAAAAGGAGATTATGGCTGAATCCTTCAGGAATACGTCAATTTTCTC
CGCCTTTTTCTCAAAGACAATAGAGAAGTGAACCATTCCGACTCGATATT
CGTGATTCCCACCCAAAAATTACCCCGTACTGAGACTTTCAGCCCTTAGA
ACCGGCTTTTTGAGGTTTCGAGGGGGAGGAGATGGCAGCCTTCCATCCCC
GCCTCTTTGGCGTGTTGGGATAGCTGTAACTCGGTGCCATCGATGAATTT
AGAAAATCTGACGACGGATTCGTAATCCCCACCCCATAATTACCCTGACC
TGAAATTCTCAGATCAATCTGACAACTTTTCAAAAGCGGGGATGTTTCAG
GACCATCCCCGGAGTATTGCGTTTTTAGAAATTCCCTAGTGAAAAACGGA
AAATGAGTTGAAACCCGGCCAAATACAGCACAAAAAAAAAAAAACGAATC
CACCATTTACATCTCCGGCCATGTATATAATAAAATTTTCAGACCTTAGT
CGGGGATGGTTCATCACCATCCCCGCCCCGCCAAAAAAGTACGGCTGTTG
ACTGCGGATGGCGCCTACAGCAGTATTTCGTTTTTTTTGGCCTTCCGTCA
ATACGGGCTCTTTGGCCTTCCGTTAACCCTTTGAACCCCCCAATCGCAAT
TGCGGACAATTTGGGGACACTTTTTTTTTTTTACTTAGGTTTTGAAGGCG
CCTACCTACAGATATTTTGGGTGTGGATCAACCAATAGTTGGCTGCCTCC
GTGCCACATTTGTTTTTTATTATTACTATGGGAGACCAAGAGCGCCCGAC
TGTTAGGTTTGTTGTGTGTCATTCTCTTCCCTCGACAGCACGGTAGACAC
AACGGCGATCGTCTTGTTGTATCACACTTCATGCCGGCAACCCTCCCTGC
ATTGCACACAACATGCACACATACATAAGACATGATACATAGACTACATG
TTAGATTACCGCTCATATCATATGAAACGCTGATGCTGACGTACTGCTGT
ACTCACATACATACCCTTATTTCTGCAACTATTATTGTACTGCTGCTGCT
ACTGCTGCTGTGCATGCTGCAGCAAGCAGCTAGCTGATGATGTGTCGTGC
GATGGGTTGGTGAGACACACACTACGCACACGGGGGCCGACACTACAAAT
ATATAGACACATCACGCCACGCACGTTTGAAAGCTCACAAACATACCCAG
CGATCCCGGACGAGTATCATTGCATGGATGGGTACCATTACATGCCGACA
CCCTTGCGTTGATCACATACATCCAACATACAGATGATATGTTTGACTTC
AGTAGTAGGCTAGTAGTGCAGCTGCTGGTTGCTGCTGCTGATGAGATGCT
GTAGACCCTGATTGAGTGTCGTGCGCGGGTACAACCTTGCGGAGTGGAAC
CCTACTGCTGTGTGGTTATCGAGCGGGGTACCCTGATCTGCCATGCTAAG
TGGCGGTGTTGCTGCGTGCTACCTTGCATACAGCAGTATCCCTTTGAAGT
AAACATTCTGCAAAACTAAACAAACAACTTTTGTTTAGTTGACCCCGCCG
AAAAAGTTTGTGTAGCTTTACTGTAGACTGAAGTCTGTCCCCATTTTTTT
CAGGGCAAATTGGGGACAGATTTCTGTGTACGTATAATAACCAAGTCACA
CCCTTTTTTCACCGGACAGAGCCAGCGAGACGTCAGTCCCCTTTTTTTTT
GAGACTGCCCACCATTCGCCAATCATCGGCGCACCGGAATATGTTAATTT
TGGGCTCCATAATTATTTTTTACCCAAAGGGTTTAATCTCCGGTCTCATG
CCACGAGCTCACAACCGCAAGCCTCAACCAGCCAATCCGACACTCTCAGA
CATGTGCAGATAGATATGGAGCTCCGGCGCGGAAGCACTGAAAGCAGCAT
TTGTCTATCAATCTGGTTGTTGTCTCACTATTACTATCGCAAAGTAAAAA
CAGGTCTCACACAGCAGTCACCCGTCCGTATGTAGCGCGTTTGACTTTTC
TTTTTCGCTCTGACTGGTTGTCACAGCAGTGTAGCATCAGGTACGCGATG
CTGGACATCGAGCGCGGCAAAAGTGAGATGCGAGGCGATCTGGGCTTGCT
TGCTATGTACACACGTGTGCATGACTATACTACTGCTGTGCTTTATGTAC
ACATACGTTGCGTGCGTCGATATATGTAGTCTGGCCGCCTGTTTGTGGGG
CCAATCAGGCGCATGTAAAACATTCATCAGCTGGCGTACTGACTTTTTTT
GTGGGGCCAATCACCAGCTGGTGCTGCTGACGTCGGTCTGTTCACCCGTC
AACAGCTGTTGCTTTGTTACTGTTCACCAAACAGCTGTTGGGCCTGACGT
TTTTTGGGCCGTTCGCTGAACCGCTCACATAAAAACAGTCAGCTGTCATC
TCCGGCCGTTTTCAACCCAAGGAATTGAGAGAATTTTCCGAAGAAGGATT
TACAAAAGCCTAAGTGTACTCATTTTCATGTCGAAGACAAGACAACGTTG
CCGCTCATCAATTTCGTTCCCAATATGTTATCATGCTTGTGGTTTCATCT
CCCTCCGTTCTCGAAAAATCACTGTGACTGCCTGCAACAGGCGGTCGAGC
AGCGCCGCGCTGGCGTGCTCGAGATGGTGCGGAAGGATCCCGTGTTGAAG
GAGGAGATGAGGGCAATGCTGGGGGTGCAAGGGTTGGAGGGCGTAGCCGC
AGTCCACGCGGAAAACACTCGCGCGATGGCCGCTTCGTTGGCCGCGTTGC
AGGCCAACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:63958..69167-

>mRNA_P-littoralis_Contig78.10.1 ID=mRNA_P-littoralis_Contig78.10.1|Name=mRNA_P-littoralis_Contig78.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig78:63958..69167- (Pylaiella littoralis U1_48)
GGCACGCAGAGGAGTCGTGGTGCGAAGATCCAGGACGTTGCAGCTGACAA
CGATGAGGTTGTCGCCGTTGCGAAGGAGCACGCTAACAAGATTCGCCAAC
GAGCAGAGAGTCGCCAACGTTCTTCCGCATCTACTGCTGCTGCTGTGAAG
AGAAAGCGTGGCAACGCCGACCTCGAGGTGGCTGCAGCGGATCCTGTGCA
GGCGGCGATCACCAGCGGGCTACGAGGGGGTGATATCGCACCACGCCCGG
CGAAGGCGTCACGAAAGCCAACTGCGGTCGAGCAGCGCCGCGCTGGCGTG
CTCGAGATGGTGCGGAAGGATCCCGTGTTGAAGGAGGAGATGAGGGCAAT
GCTGGGGGTGCAAGGGTTGGAGGGCGTAGCCGCAGTCCACGCGGAAAACA
CTCGCGCGATGGCCGCTTCGTTGGCCGCGTTGCAGGCCAAC
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