mRNA_P-littoralis_Contig78.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.6.1
Unique NamemRNA_P-littoralis_Contig78.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Match: A0A6H5JJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.390e-43
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGCLGKWSPYKIANFKMELIGANQIPRPRIDLTGIPGSSKLHQFMRAEKQ 227
            GFRIHDTAAAHDFLS YA+SKEED GGCLGKWSPYKIANFKMELIGAN+IPRPR+DLTGIPGSSKL+QFM AE Q
Sbjct:    8 GFRIHDTAAAHDFLSAYAKSKEEDAGGCLGKWSPYKIANFKMELIGANEIPRPRVDLTGIPGSSKLYQFMGAENQ 82
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BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Match: A0A6H5KF65_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF65_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.970e-36
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGCLGKWSPYKIANFKMELIGANQIPRPRIDLTGIPGSSKLHQFMRAEKQ 227
            GFRIHD AAAHDFLS YA+SKEEDEGGCLGKWSPYKIANFK+ELIGANQI RPR+DLTGI G+SKL+QFM AE Q
Sbjct:  528 GFRIHDNAAAHDFLSAYAKSKEEDEGGCLGKWSPYKIANFKIELIGANQIRRPRVDLTGIRGTSKLYQFMGAENQ 602
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BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Match: A0A6H5J993_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J993_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-17
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGCLGKWSPYKIANFKMELIGANQIPRPRIDLTGIPGSSKLHQFMRAEKQ 227
            G RIH+T AA DFL  Y  +KE D GG    WSPY+   F ++L+G  +I RP +DLTGI GSSK HQFM AE Q
Sbjct:  137 GQRIHNTQAAADFLQVYPEAKE-DGGGHFSSWSPYRTKRFHIKLLGYREITRPFVDLTGISGSSKQHQFMGAEVQ 210
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BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Match: A0A6H5L780_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L780_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.740e-14
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGCLGKWSPYKIANFKMELIGANQIPRPRIDLTGIPGSSKLHQFMRAEKQ 227
            G RI D   AH+FL  YA   ++   G    WSPY+I +F++   G  +IPRP IDLTGIPGSSKL+ F   E +
Sbjct:  358 GTRIPDVDVAHEFLLGYAVEADKAREGHFTTWSPYRIKSFEVRKFGPKEIPRPPIDLTGIPGSSKLYFFTGTEDE 432
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BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.930e-14
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:    3 GFRIHDTAAAHDFLSEYARSKEEDEGGCLGKWSPYKIANFKMELIGANQIPRPRIDLTGIPGSSKLHQFMRAEKQ 227
            G RI D   AH+FL  YA   ++   G    WSPY+I +F++   G  +IPRP IDLTGIPGSSKL+ F   E +
Sbjct:  714 GTRIPDVDVAHEFLLGYAVEADKAREGHFTTWSPYRIKSFEVRKFGPKEIPRPPIDLTGIPGSSKLYFFTGTEDE 788
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BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Match: A0A6H5K614_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K614_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.880e-6
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  200 APVHEGGEAG--------VEPADSRVVVAAGNGHANPGPDVVGP 307
            +PVH GGE G        VEPADSRVVVAAG+ HANPGP+VVGP
Sbjct:  198 SPVHGGGEPGQRPRSSLGVEPADSRVVVAAGDEHANPGPEVVGP 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JJA7_9PHAE4.390e-4389.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF65_9PHAE1.970e-3685.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J993_9PHAE1.310e-1756.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L780_9PHAE6.740e-1448.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE6.930e-1448.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K614_9PHAE1.880e-668.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:61532..61840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size309
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.2118905-UTR-P-littoralis_Contig78:61531..615801680791603.2118905-UTR-P-littoralis_Contig78:61531..61580Pylaiella littoralis U1_48UTRP-littoralis_Contig78 61532..61580 -
1680791603.2329183-UTR-P-littoralis_Contig78:61715..618401680791603.2329183-UTR-P-littoralis_Contig78:61715..61840Pylaiella littoralis U1_48UTRP-littoralis_Contig78 61716..61840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.222752-CDS-P-littoralis_Contig78:61580..617151680791603.222752-CDS-P-littoralis_Contig78:61580..61715Pylaiella littoralis U1_48CDSP-littoralis_Contig78 61581..61715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.6.1prot_P-littoralis_Contig78.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 61581..61715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.6.1

>prot_P-littoralis_Contig78.6.1 ID=prot_P-littoralis_Contig78.6.1|Name=mRNA_P-littoralis_Contig78.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MELIGANQIPRPRIDLTGIPGSSKLHQFMRAEKQGWNQQILESW*
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mRNA from alignment at P-littoralis_Contig78:61532..61840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.6.1 ID=mRNA_P-littoralis_Contig78.6.1|Name=mRNA_P-littoralis_Contig78.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig78:61532..61840- (Pylaiella littoralis U1_48)
GAGGCTTCCGCATCCACGACACCGCCGCCGCGCACGACTTTCTTTCAGAA
TACGCCAGGAGCAAAGAAGAGGACGAAGGAGGTTGCTTGGGGAAGTGGTC
TCCCTACAAGATCGCCAACTTCAAGATGGAGCTGATTGGAGCCAACCAGA
TCCCCCGCCCGCGTATTGATCTGACGGGTATCCCTGGAAGTTCCAAGTTG
CACCAGTTCATGAGGGCGGAGAAGCAGGGGTGGAACCAGCAGATTCTAGA
GTCGTGGTAGCGGCAGGGAATGGACACGCGAACCCTGGCCCCGACGTAGT
CGGACCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:61532..61840-

>mRNA_P-littoralis_Contig78.6.1 ID=mRNA_P-littoralis_Contig78.6.1|Name=mRNA_P-littoralis_Contig78.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig78:61532..61840- (Pylaiella littoralis U1_48)
ATGGAGCTGATTGGAGCCAACCAGATCCCCCGCCCGCGTATTGATCTGAC
GGGTATCCCTGGAAGTTCCAAGTTGCACCAGTTCATGAGGGCGGAGAAGC
AGGGGTGGAACCAGCAGATTCTAGAGTCGTGGTAG
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