mRNA_P-littoralis_Contig78.45.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.45.2
Unique NamemRNA_P-littoralis_Contig78.45.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.45.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:189710..190814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size160
Hectar predicted targeting categorysignal peptide
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.253808-CDS-P-littoralis_Contig78:189709..1897581680791602.253808-CDS-P-littoralis_Contig78:189709..189758Pylaiella littoralis U1_48CDSP-littoralis_Contig78 189710..189758 +
1680791602.2717953-CDS-P-littoralis_Contig78:190704..1908141680791602.2717953-CDS-P-littoralis_Contig78:190704..190814Pylaiella littoralis U1_48CDSP-littoralis_Contig78 190705..190814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.45.2prot_P-littoralis_Contig78.45.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 189710..190814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.45.2

>prot_P-littoralis_Contig78.45.2 ID=prot_P-littoralis_Contig78.45.2|Name=mRNA_P-littoralis_Contig78.45.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
AFFLAFSLFARFSSCGGIFSRSETSFFLLIVKHANDPRPEKSSWMSVLPS
ES*
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mRNA from alignment at P-littoralis_Contig78:189710..190814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.45.2 ID=mRNA_P-littoralis_Contig78.45.2|Name=mRNA_P-littoralis_Contig78.45.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1105bp|location=Sequence derived from alignment at P-littoralis_Contig78:189710..190814+ (Pylaiella littoralis U1_48)
GCCTTCTTCCTGGCCTTCTCTTTGTTTGCTCGTTTCAGCAGCTGTGGAGG
TACGCCAATCATGCGACAAGCGGTTGTTTGGGGAGAAACATATAAAAAAT
CTGAATTGCTGTGGAACACCAAGGTGACTGACGCTCAACTGCTGTCTGCA
ACACAAAACAAACATGCACGGCGCGATTTTTCTATCGGCTACTGCTGGAG
CTTTGATCAAGCGCGCCAACAATGCTCCAATGGATTTTTGTTTTTGTGAA
ACAACAGGTGGTGTGACGAACAACAGCAGATGAAGACAAACAAAATCTTA
TCCAATAAACAGCACCCGCAGGTGAATCAATCAATGATGACAAACAGCAG
TTTCGAACACAAGCGTCTTTCCCTTGGCAATAAGTAGCGCTCAATAGCAC
CGCAGCAGCAACTGCATTGTTTGTCTCCCCACCTATCGTTTCACGAGCGT
TTTTTGTTTATTTTGCGCCCACCGAGGTATTGTTTTCGTGCTTCACCGCA
GGTACAGCAGTACCCGATACGAAGTACGAGTATAATTTTCGCTCCGTGCA
TGTTTGTTTGTGGTTTGAAAAATAAAACAGGTACGGCAGTAGCCGATAAA
ATTTGCACGTTTGTTTTGTGGTGCGAAAAAACACATACCACAAAACAAAC
AAACACGGCGCGAAAATATCTCGGCTATGTACTGCTGTACTGTTGTATTT
GACACCACACAACAATCATGCACGGCGCGAGTTTTTATATCGGCTGCTGC
TGTACCCGTGGTCAAGCACAGCCACAATACTCGATGCGAGAAAAAAAACA
CTCGTGGAACAACAGGTAGGTGGTGTTACCAACAGCAGCAAGTGTCAAAA
AACCAATGACAAATCAATAAGCGCCCCTGCCAGTGAATCACTGAAAGAAA
ATATTCCCTATCTTGTACTTCTACATCACATACCTTCGTAGCCAAAGCCT
TCCTCTCGCTGCATTTGACAAACGCCTTCTTGTACGCCGCCTCAGGTATC
TTCTCGAGGTCGGAGACGAGTTTCTTCTTGTTGATCGTCAAACACGCAAA
CGACCCACGCCCTGAGAAATCTTCATGGATGTCGGTGTTGCCGTCCGAAT
CGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:189710..190814+

>mRNA_P-littoralis_Contig78.45.2 ID=mRNA_P-littoralis_Contig78.45.2|Name=mRNA_P-littoralis_Contig78.45.2|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig78:189710..190814+ (Pylaiella littoralis U1_48)
GCCTTCTTCCTGGCCTTCTCTTTGTTTGCTCGTTTCAGCAGCTGTGGAGG
TATCTTCTCGAGGTCGGAGACGAGTTTCTTCTTGTTGATCGTCAAACACG
CAAACGACCCACGCCCTGAGAAATCTTCATGGATGTCGGTGTTGCCGTCC
GAATCGTAA
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