mRNA_P-littoralis_Contig78.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.44.1
Unique NamemRNA_P-littoralis_Contig78.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.790e-7
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  377 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSLDDFMDTLD 526
            V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PSLD FMD+LD
Sbjct:   69 VVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDSLD 118
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BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.440e-7
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  377 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSLDDFMDTLD 526
            V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PSLD FMD+LD
Sbjct:  360 VVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDSLD 409
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BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.600e-7
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  377 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSLDDFMDTLD 526
            V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PSLD FMD+LD
Sbjct:  576 VVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDSLD 625
[Close]
BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.510e-7
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  377 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSLDDFMDTLD 526
            V WT+RGIP+FAGT  H+ R +R + S  SLS  AR+K+PSLD FMD LD
Sbjct:  471 VVWTDRGIPDFAGTDDHKKRTQRETVSAASLSASAREKLPSLDTFMDNLD 520
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BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5K4K7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-6
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  377 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSLDDFMDTLD 526
            V WT+RGIP+FAGT  H+ RN+R +    SLS  A +K+PSLD FMD+LD
Sbjct:   66 VVWTDRGIPDFAGTDDHKKRNQRETVRAASLSASACEKLPSLDTFMDSLD 115
[Close]
BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5K5H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.650e-6
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:  362 EVGSSVQWTERGIPNFAGTAAHENRNKR----SSKSEVSLSQKARDKMPSLDDFMDTLDPDTG 538
            EV  S  W+ERGIP F  T A++ R K+    SS S VSLSQ AR+KMP+LD FM T+  ++G
Sbjct:   53 EVDESWAWSERGIPEFENTDAYKRRKKKPAAGSSASPVSLSQSAREKMPALDQFMQTIGSNSG 115
[Close]
BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.020e-6
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:  377 VQWTERGIPNFAGTAAHENRNKRSSKSEVSLSQKARDKMPSLDDFMDTLD 526
            V WT+RGIP+FA T  H+ R++R + S  SLS  AR+K+PS+D FMD+LD
Sbjct:  401 VVWTDRGIPDFAETDYHKKRDQREAVSAASLSASAREKLPSVDTFMDSLD 450
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KIE0_9PHAE1.790e-760.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE2.440e-760.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE2.600e-760.00HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE3.510e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4K7_9PHAE1.200e-658.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K5H6_9PHAE1.650e-652.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B4_9PHAE5.020e-656.00DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:189404..190833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.1924093-CDS-P-littoralis_Contig78:189403..1897501680791602.1924093-CDS-P-littoralis_Contig78:189403..189750Pylaiella littoralis U1_48CDSP-littoralis_Contig78 189404..189750 -
1680791602.2032118-CDS-P-littoralis_Contig78:190642..1906731680791602.2032118-CDS-P-littoralis_Contig78:190642..190673Pylaiella littoralis U1_48CDSP-littoralis_Contig78 190643..190673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.2170804-UTR-P-littoralis_Contig78:190673..1908331680791602.2170804-UTR-P-littoralis_Contig78:190673..190833Pylaiella littoralis U1_48UTRP-littoralis_Contig78 190674..190833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.44.1prot_P-littoralis_Contig78.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 189404..190673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.44.1

>prot_P-littoralis_Contig78.44.1 ID=prot_P-littoralis_Contig78.44.1|Name=mRNA_P-littoralis_Contig78.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MQREEGFGYEAAETSKQREGQEEGCGREGDGGGRQAHEGWQREAEAAGGE
GKDEGGGGGGGGGGGDWEVGSSVQWTERGIPNFAGTAAHENRNKRSSKSE
VSLSQKARDKMPSLDDFMDTLDPDTG
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mRNA from alignment at P-littoralis_Contig78:189404..190833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.44.1 ID=mRNA_P-littoralis_Contig78.44.1|Name=mRNA_P-littoralis_Contig78.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1430bp|location=Sequence derived from alignment at P-littoralis_Contig78:189404..190833- (Pylaiella littoralis U1_48)
ATCTTCCACTTCTCGTATGTTACGATTCGGACGGCAACACCGACATCCAT
GAAGATTTCTCAGGGCGTGGGTCGTTTGCGTGTTTGACGATCAACAAGAA
GAAACTCGTCTCCGACCTCGAGAAGATACCTGAGGCGGCGTACAAGAAGG
CGTTTGTCAAATGCAGCGAGAGGAAGGCTTTGGCTACGAAGGTATGTGAT
GTAGAAGTACAAGATAGGGAATATTTTCTTTCAGTGATTCACTGGCAGGG
GCGCTTATTGATTTGTCATTGGTTTTTTGACACTTGCTGCTGTTGGTAAC
ACCACCTACCTGTTGTTCCACGAGTGTTTTTTTTCTCGCATCGAGTATTG
TGGCTGTGCTTGACCACGGGTACAGCAGCAGCCGATATAAAAACTCGCGC
CGTGCATGATTGTTGTGTGGTGTCAAATACAACAGTACAGCAGTACATAG
CCGAGATATTTTCGCGCCGTGTTTGTTTGTTTTGTGGTATGTGTTTTTTC
GCACCACAAAACAAACGTGCAAATTTTATCGGCTACTGCCGTACCTGTTT
TATTTTTCAAACCACAAACAAACATGCACGGAGCGAAAATTATACTCGTA
CTTCGTATCGGGTACTGCTGTACCTGCGGTGAAGCACGAAAACAATACCT
CGGTGGGCGCAAAATAAACAAAAAACGCTCGTGAAACGATAGGTGGGGAG
ACAAACAATGCAGTTGCTGCTGCGGTGCTATTGAGCGCTACTTATTGCCA
AGGGAAAGACGCTTGTGTTCGAAACTGCTGTTTGTCATCATTGATTGATT
CACCTGCGGGTGCTGTTTATTGGATAAGATTTTGTTTGTCTTCATCTGCT
GTTGTTCGTCACACCACCTGTTGTTTCACAAAAACAAAAATCCATTGGAG
CATTGTTGGCGCGCTTGATCAAAGCTCCAGCAGTAGCCGATAGAAAAATC
GCGCCGTGCATGTTTGTTTTGTGTTGCAGACAGCAGTTGAGCGTCAGTCA
CCTTGGTGTTCCACAGCAATTCAGATTTTTTATATGTTTCTCCCCAAACA
ACCGCTTGTCGCATGATTGGCGTACCTCCACAGCTGCTGAAACGAGCAAA
CAAAGAGAAGGCCAGGAAGAAGGCTGCGGACGAGAAGGAGACGGCGGAGG
CCGGCAAGCGCATGAGGGGTGGCAAAGGGAAGCAGAGGCAGCAGGGGGGG
AAGGCAAAGACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAT
TGGGAAGTAGGAAGTAGTGTGCAATGGACTGAGCGAGGTATCCCCAACTT
CGCCGGCACTGCGGCGCACGAGAACCGCAACAAGCGCTCGTCCAAGAGTG
AGGTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGCTCGACGAC
TTCATGGATACCCTTGACCCGGACACCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:189404..190833-

>mRNA_P-littoralis_Contig78.44.1 ID=mRNA_P-littoralis_Contig78.44.1|Name=mRNA_P-littoralis_Contig78.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig78:189404..190833- (Pylaiella littoralis U1_48)
ATGCAGCGAGAGGAAGGCTTTGGCTACGAAGCTGCTGAAACGAGCAAACA
AAGAGAAGGCCAGGAAGAAGGCTGCGGACGAGAAGGAGACGGCGGAGGCC
GGCAAGCGCATGAGGGGTGGCAAAGGGAAGCAGAGGCAGCAGGGGGGGAA
GGCAAAGACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATTG
GGAAGTAGGAAGTAGTGTGCAATGGACTGAGCGAGGTATCCCCAACTTCG
CCGGCACTGCGGCGCACGAGAACCGCAACAAGCGCTCGTCCAAGAGTGAG
GTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGCTCGACGACTT
CATGGATACCCTTGACCCGGACACCGGC
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