mRNA_P-littoralis_Contig1197.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1197.22.1
Unique NamemRNA_P-littoralis_Contig1197.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1197.22.1 vs. uniprot
Match: D7FL67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL67_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.570e-7
Identity = 30/48 (62.50%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  151 MLSLRFLAVRDVLRLPSAADGG---KVTWSIQTQGSQSTRFVQLDENV 285
            ML+ RFLA+RDV R PSA D     K TWSI+TQG  STRFV LDE  
Sbjct:    1 MLTFRFLALRDVPR-PSATDASSPRKATWSIRTQGGNSTRFVDLDEGA 47
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL67_ECTSI4.570e-762.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:44820..45122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.4906037-CDS-P-littoralis_Contig1197:44819..451221680789503.4906037-CDS-P-littoralis_Contig1197:44819..45122Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 44820..45122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.22.1prot_P-littoralis_Contig1197.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1197 44820..45122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1197.22.1

>prot_P-littoralis_Contig1197.22.1 ID=prot_P-littoralis_Contig1197.22.1|Name=mRNA_P-littoralis_Contig1197.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
HVSDFLPAGPVVALHKYQFKICLLLSLKLPHYQSVWRWCGVARCCCERVI
MLSLRFLAVRDVLRLPSAADGGKVTWSIQTQGSQSTRFVQLDENVTRRGN
T
back to top

mRNA from alignment at P-littoralis_Contig1197:44820..45122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1197.22.1 ID=mRNA_P-littoralis_Contig1197.22.1|Name=mRNA_P-littoralis_Contig1197.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1197:44820..45122- (Pylaiella littoralis U1_48)
CATGTATCAGATTTTCTGCCAGCTGGTCCGGTTGTAGCCCTGCACAAGTA
TCAGTTCAAGATCTGCCTGCTCTTGTCGTTGAAGCTGCCTCATTACCAGT
CAGTGTGGAGGTGGTGTGGTGTGGCTCGCTGCTGCTGTGAACGGGTCATC
ATGTTGTCTCTACGGTTTCTAGCCGTGCGGGACGTGCTCCGTCTCCCATC
TGCTGCAGACGGGGGGAAAGTGACCTGGTCGATCCAAACACAAGGGAGCC
AGAGCACCCGCTTTGTCCAGTTGGACGAAAACGTCACACGTCGTGGCAAC
ACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1197:44820..45122-

>mRNA_P-littoralis_Contig1197.22.1 ID=mRNA_P-littoralis_Contig1197.22.1|Name=mRNA_P-littoralis_Contig1197.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1197:44820..45122- (Pylaiella littoralis U1_48)
CATGTATCAGATTTTCTGCCAGCTGGTCCGGTTGTAGCCCTGCACAAGTA
TCAGTTCAAGATCTGCCTGCTCTTGTCGTTGAAGCTGCCTCATTACCAGT
CAGTGTGGAGGTGGTGTGGTGTGGCTCGCTGCTGCTGTGAACGGGTCATC
ATGTTGTCTCTACGGTTTCTAGCCGTGCGGGACGTGCTCCGTCTCCCATC
TGCTGCAGACGGGGGGAAAGTGACCTGGTCGATCCAAACACAAGGGAGCC
AGAGCACCCGCTTTGTCCAGTTGGACGAAAACGTCACACGTCGTGGCAAC
ACG
back to top