mRNA_P-littoralis_Contig78.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.12.1
Unique NamemRNA_P-littoralis_Contig78.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:72710..73680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size217
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.1036506-CDS-P-littoralis_Contig78:72709..728531680791602.1036506-CDS-P-littoralis_Contig78:72709..72853Pylaiella littoralis U1_48CDSP-littoralis_Contig78 72710..72853 +
1680791602.1160555-CDS-P-littoralis_Contig78:73608..736801680791602.1160555-CDS-P-littoralis_Contig78:73608..73680Pylaiella littoralis U1_48CDSP-littoralis_Contig78 73609..73680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.12.1prot_P-littoralis_Contig78.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 72710..73680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.12.1

>prot_P-littoralis_Contig78.12.1 ID=prot_P-littoralis_Contig78.12.1|Name=mRNA_P-littoralis_Contig78.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
ECQLTKATATKFGRDRGIAKVKEPWAKRALSYMWGLREATVELEASRELK
NTARAEAKSNQPLLASNEEESG
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mRNA from alignment at P-littoralis_Contig78:72710..73680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.12.1 ID=mRNA_P-littoralis_Contig78.12.1|Name=mRNA_P-littoralis_Contig78.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=971bp|location=Sequence derived from alignment at P-littoralis_Contig78:72710..73680+ (Pylaiella littoralis U1_48)
GAGTGCCAACTCACCAAGGCAACAGCCACGAAATTTGGACGAGACAGGGG
AATAGCAAAGGTTAAGGAGCCTTGGGCAAAACGAGCGCTGTCTTACATGT
GGGGCCTGCGCGAAGCAACGGTGGAGTTGGAGGCAAGCCGCGAGGTGAGA
AGCGTAGTCTTTTTTTGGCTGGGAGAACCTCTTTACCCCAATAATTCAGT
GCCGGTATAGCCCCGAGTCTACCAGGACTCTGCGGGAGCATCTCTCTTTT
TTTTTCGTCTTCTCCGCCTCTGATCTCCACCTCTGAGTTATCCCAAGATA
CATATATATTTTTTAACTAGTCGTATATCGATACTGTTTGTATCGATTTA
TTTAGTGGAACAGCCTTTGATCAACATGAAATCCGGACGACCTTCGTACT
CTCGACGACATAGTACGTGCGCTGTCAAATTGTTGTAGCAGGAGCTCGCC
AAACATCGAGAGATATGCCTGCCCTTGCCAATTGCTCAGTAGAACGCGTT
TGGAGCTTGCCAAAAACAAAACATCAGAAACACCACATGAATTTGCGGAA
AATGCGCGACCAGACGGAGAGATCCGACAGAAACATTGAAACAGATCATC
GGAAGCGAAAGGACAAACGAAATCCAGAAGTGGTAGCCGTCTACGTACAA
CGCCTCAACATCCTGTTTACAACGCTAGAGACCACTAAATCTCCATGGAC
AGGCATCTTGTTTATTTGTCCTGGTGCTTCAGAAAGTGGCAGGTGGAAAC
GTGTGCGATACTCCATCAGTATGCCTTGTTTTACGAGAGTCCCGGACGTT
TTTCATCCCCAGATCCGCACCGCAGTGAATCTCGTGATTGGTGCTCACTG
AACCTGCCCTTTGCTTTTTTCCTCTCAACGCGTGTATTGCCTGTATCAGT
TAAAAAATACTGCAAGGGCTGAAGCTAAAAGCAATCAACCACTCCTGGCA
AGCAATGAGGAAGAGAGTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:72710..73680+

>mRNA_P-littoralis_Contig78.12.1 ID=mRNA_P-littoralis_Contig78.12.1|Name=mRNA_P-littoralis_Contig78.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig78:72710..73680+ (Pylaiella littoralis U1_48)
GAGTGCCAACTCACCAAGGCAACAGCCACGAAATTTGGACGAGACAGGGG
AATAGCAAAGGTTAAGGAGCCTTGGGCAAAACGAGCGCTGTCTTACATGT
GGGGCCTGCGCGAAGCAACGGTGGAGTTGGAGGCAAGCCGCGAGTTAAAA
AATACTGCAAGGGCTGAAGCTAAAAGCAATCAACCACTCCTGGCAAGCAA
TGAGGAAGAGAGTGGT
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