mRNA_P-littoralis_Contig779.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig779.27.1
Unique NamemRNA_P-littoralis_Contig779.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: D7FX13_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX13_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 1.210e-131
Identity = 195/240 (81.25%), Postives = 210/240 (87.50%), Query Frame = 1 
Query:   49 MSGARAKIGS-NTETTAEQRGPSLTDAYLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGAPKLYMHMIRQRKKQLGGAAGGGKAKAS 765
            MS A A+ G+ NT       GPSLTDAYLLLYN  CAVGWNL LYKIG A+LEGG VRDAVEATHD V ALQLVSTLE VHA  GLV+SNPMN+FMQV GRDLALFSVVTAFPPVR+S W+LLMF+AWATSEVIRYPFYAL+IAGMCPP LQWLRY+AF++LYPLGFAGELGTWIVGLPHIKAVGLPG+PGLPEGS +YVLYAYIVFAFAIGAPKLYMHM+RQRKKQL    GGGK KAS
Sbjct:    1 MSAASARTGTDNTRVATYGGGPSLTDAYLLLYNGACAVGWNLTLYKIGGAILEGGDVRDAVEATHDYVAALQLVSTLELVHAFVGLVKSNPMNVFMQVFGRDLALFSVVTAFPPVRDSPWVLLMFTAWATSEVIRYPFYALNIAGMCPPVLQWLRYSAFVLLYPLGFAGELGTWIVGLPHIKAVGLPGVPGLPEGSSIYVLYAYIVFAFAIGAPKLYMHMLRQRKKQL---QGGGKVKAS 237
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A0A835Z8Y0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y0_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.820e-45
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 1 
Query:  214 VRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGAPKLYMHMIRQRKKQL 729
            +  +VE    +VV LQL+STLE VH   GL R      F Q+ GRD+ LF    A P VR S    L+++ WA SE+IRYP+YA ++  +CP  L WLRY+AF++LYPLGFA E+G ++V  PH+KA     + GLPEG    VL AY++FA AIGA  L+ +M++ RK+QL
Sbjct:   11 ISHSVENATPLVVGLQLLSTLELVHVLLGLTRGGAAQTFAQIGGRDICLFLTAAAEPAVRRSWVAALLYATWAASEIIRYPYYATNLLEICPDFLHWLRYSAFMLLYPLGFAAEVGCFVVAYPHMKAGDKYRIEGLPEGGQFAVLGAYMLFAHAIGALTLFKYMLKARKRQL 182
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A0A2V0NKZ4_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKZ4_9CHLO)

HSP 1 Score: 149 bits (377), Expect = 1.820e-38
Identity = 87/216 (40.28%), Postives = 117/216 (54.17%), Query Frame = 1 
Query:  124 AYLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGAPKL----YMHMIRQRKKQLGGA--AGGGK 753
            AYL+ YN   A GW + LY+I  AL  GG   +A  A       +Q ++ LE +HA  GLV SN +N FMQ LGR  AL+ +  A P +  +    LM + W+  EV+RYP+YA + AG CP  L WLRYTAFI +YP G A E+      LP I+  G+  +  +P  +     YA  +       P L    Y  ++RQR+K+LG A  AG GK
Sbjct:    7 AYLVAYNAAQAAGWGVCLYQIAGALAAGGGPAEAYRAGAPSAAWMQCIAALEILHAATGLVPSNALNTFMQWLGRSNALYRIAQAIPELHANPAAALMLACWSLGEVVRYPWYAATAAGACPRWLTWLRYTAFIPIYPAGVAAEMVLMWRALPFIRRRGIFSV-AMPNAANFAFDYATFITVVLAAYPYLWWGLYSTLLRQRRKKLGPAEPAGAGK 221
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A0A2R6XKE6_MARPO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XKE6_MARPO)

HSP 1 Score: 147 bits (370), Expect = 2.180e-37
Identity = 87/209 (41.63%), Postives = 119/209 (56.94%), Query Frame = 1 
Query:  112 SLTDAYLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGL-PGLPG--LPEGSGMYVLYAYIVFAFAIGAPKLYMHMIRQRKKQL 729
            S+  AYL+ YN   AVGW ++L K+G + ++ G    A  A  ++V ALQL + LEF+HA  GLVRS  +   MQ  GR   L +V+   P  +    + ++F+AW+ SEVIRYP YALS  G CP  L WLRYTAFI+LYP G  GE+    + L  I    L  G+ G  LP     +VL   I + F      L++HM +QR+ +L
Sbjct:    4 SIVKAYLVAYNAAQAVGWLVVLSKLGQSYVDTGDFNHAFVAAGNLVRALQLAAFLEFLHASFGLVRSGALTSLMQWGGRTHVLLAVIAKLPEAQVLPSVFIVFTAWSISEVIRYPQYALSSLGACPRWLLWLRYTAFILLYPAGIYGEMNAMYISLKPIADRQLYSGIFGQLLPFTYDKFVLGLLIAYPFLFVI--LFLHMFKQRRSKL 210
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: E1Z3Z4_CHLVA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3Z4_CHLVA)

HSP 1 Score: 142 bits (359), Expect = 6.890e-36
Identity = 86/209 (41.15%), Postives = 109/209 (52.15%), Query Frame = 1 
Query:  115 LTDAYLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGAP----KLYMHMIRQRKKQL 729
            L  AYLLLYN     GW   LY +   +    S+        D V   QL S LE +HA  GLV  +P+   MQ  GR   LF VV A P V+N+  +  M  AWA SEV RYP+YA ++ G CP  L W+RYTAFI LYP+G  GE+ +    LP IK  GL  +P LP  +     Y   + A     P    +LY  + RQR+K+L
Sbjct:    6 LPKAYLLLYNVAQFGGWAFCLYHLLNHVDTTRSLEGTYAVAGDAVRLFQLASALEILHAAVGLVGGSPVTALMQWAGRSNVLFGVVGAVPEVQNTAAVGAMLLAWALSEVTRYPWYAANLVGACPRWLTWIRYTAFIPLYPVGVVGEMWSVYQALPFIKQRGLRSVP-LPNAANFAFDYPTFLVALMCVYPLLWFQLYSFLFRQRRKKL 213
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A9T2K9_PHYPA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9T2K9_PHYPA)

HSP 1 Score: 142 bits (358), Expect = 1.190e-35
Identity = 81/206 (39.32%), Postives = 119/206 (57.77%), Query Frame = 1 
Query:  121 DAYLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLG-FAGELGTWIVGLPHIKAVGL--PGLPGLPEGSGMYVLYAYIVFAFAIGAPKLYMHMIRQRKKQL 729
            +AYL  YN+  ++GW L+L ++   ++E  S+R    A  ++V  LQL + LE +H+  GLV +  +  FMQ LGR   LF++V   P V+    I++ F AW+ +EVIRYP Y L + G+CP  L WLRYTAFI+LYP+G   GE+    + L  IK   L       LP     +V++  I++ F      LY+HM RQR+ +L
Sbjct:    9 NAYLTCYNSLQSLGWALVLLRLVNDIVETKSLRGGFSAAGNVVCFLQLAAFLEILHSALGLVPTGILFAFMQWLGRSHVLFAIVAKIPEVQEQPPIMITFLAWSAAEVIRYPHYTLGLLGLCPHWLTWLRYTAFIVLYPIGALYGEMLAMYLSLDFIKDRNLYASSFKWLPFDYHFFVVWVMIMYPFLWLL--LYLHMFRQRRSKL 212
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A0A2P6TVL7_CHLSO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVL7_CHLSO)

HSP 1 Score: 149 bits (375), Expect = 1.480e-34
Identity = 87/205 (42.44%), Postives = 113/205 (55.12%), Query Frame = 1 
Query:  160 GWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSG-----------MYVLYAYIVFAFAIGAPKLYMHMIRQRKKQLGGAA 741
            GW + LY++G  ++   S+  A     D+V   QL S LE +HA  GLV  +P+   MQ  GR   LF VV A P V+N   +  MF AWA SE+IRYP+YA S+AG CP  L WLRYTAFI LYP+G  GE+ +    LP IKA GL  L  LP  +            +  LY ++ F       +LY  + RQR+K+LG  A
Sbjct:  618 GWAVALYRVGGHVIATRSLEGAYTVAGDVVGCFQLASALEILHAALGLVGGSPLTALMQWAGRSNVLFGVVAAVPEVQNRPAVGAMFLAWALSEIIRYPWYAASLAGACPHWLTWLRYTAFIGLYPVGVLGEMKSVFDALPFIKARGLRSL-ALPNAANWGFDYHTFLVVLLCLYPFLWF-------RLYAFLFRQRRKKLGAPA 814
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: UPI0014585FD1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014585FD1)

HSP 1 Score: 137 bits (346), Expect = 6.780e-34
Identity = 75/214 (35.05%), Postives = 112/214 (52.34%), Query Frame = 1 
Query:  112 SLTDAYLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGA----PKLYMHMIRQRKKQLGGAA 741
            SL+  YL+ YN    +GW+ I+  +G   +   SV    E    ++   Q  + LE  H   GLVRSN +    QV  R    + +  + P V+ S  + +   AW  +E+IRY FY   + GM P  LQW RYT F++LYP+G +GEL T    LP++KA  L  +  LP  + +   Y Y +    +      P+L+MHM+ QR+K +GGA+
Sbjct:   19 SLSKIYLVAYNVTQILGWSAIMLALGNHWMTNQSVTGVYEDVAPLLNIFQTAAILEIFHCAVGLVRSNVVLTAFQVFSRVFLTWGIAYSVPEVQTSIGVFMFIFAWTVTEIIRYSFYFSGLVGMIPYPLQWCRYTFFLVLYPIGVSGELLTIYASLPYVKASQLYSI-SLPNSANLSFNYYYFLICAMLTYIPVFPQLFMHMVAQRRKVIGGAS 231
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A0A2P6VMZ8_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMZ8_9CHLO)

HSP 1 Score: 137 bits (345), Expect = 7.780e-34
Identity = 88/216 (40.74%), Postives = 110/216 (50.93%), Query Frame = 1 
Query:  127 YLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGAP----KLYMHMIRQRKKQLG-GAAGGGKAK 759
            YLL YN   A GW    + +   +   GS+R A  A  + V   QL S LE VHA  GLV  +P+   MQ  GR   LF VV A P V+    +  M +AWA SEV+RYP+YA  +AG CP  L WLRYTAFI LYP+G   E+      LP I+   L  +  +P        Y   + A     P    +LY  + RQR K+LG GA  G  AK
Sbjct:   11 YLLAYNCAQAAGWAYSGWLLAQHVAATGSLRGAYAAAGEPVRLFQLASALEIVHAALGLVGGSPVTALMQWAGRSNVLFGVVAAVPEVQPGLAVGAMLAAWAASEVVRYPWYAAGVAGACPHWLTWLRYTAFIPLYPIGVVVEMAAVYQALPLIRGRRLRSV-AMPNPFNFAFDYHTFLVALLALYPLLWFRLYSFLFRQRAKKLGPGAEAGSSAK 225
[Close]
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Match: A0A3B5ZYJ9_WHEAT (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=8 Tax=Pooideae TaxID=147368 RepID=A0A3B5ZYJ9_WHEAT)

HSP 1 Score: 137 bits (344), Expect = 8.210e-34
Identity = 85/221 (38.46%), Postives = 121/221 (54.75%), Query Frame = 1 
Query:  127 YLLLYNTGCAVGWNLILYKIGTALLEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGRDLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPALQWLRYTAFIILYPLGFA-GELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVLYAYIVFAFAIGAP--------KLYMHMIRQRKKQLGGAAGGGKAKA 762
            YLL YN+  A+GW+L L ++   L    SVR A  A  D++  LQ  + LE VHA  GLV ++P   F+Q  GR   + +++   P V+ S  + + F AW+ SEVIRY  YAL+   +CP  + +LRYTAFI LYP+G   GE+ T    LP +K  GL         SG +  ++    +F +G          KLY+H+ +QRK +LG   GG K +A
Sbjct:    8 YLLAYNSVQAIGWSLALLRLLPCLAPPVSVRPAYAAAGDLICFLQTCAVLETVHAAVGLVPTSPFLAFLQWGGRTHFILALLRQIPEVQGSPSVFITFMAWSISEVIRYSHYALTTLKVCPAWMTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERGLY--------SGFFAKFSMSYHSFLVGVLLCYPLLWLKLYLHVFKQRKSKLG--KGGRKKRA 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig779.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX13_ECTSI1.210e-13181.25Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835Z8Y0_9STRA1.820e-4548.26Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2V0NKZ4_9CHLO1.820e-3840.28Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2R6XKE6_MARPO2.180e-3741.63Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
E1Z3Z4_CHLVA6.890e-3641.15Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A9T2K9_PHYPA1.190e-3539.32Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2P6TVL7_CHLSO1.480e-3442.44Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI0014585FD16.780e-3435.05very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2P6VMZ8_9CHLO7.780e-3440.74Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A3B5ZYJ9_WHEAT8.210e-3438.46Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig779contigP-littoralis_Contig779:107657..116047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX13
PFAMsPTPLA
Model size1547
Max annot lvl2759|Eukaryota
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.09e-137
EggNOG OGsCOG5198@1|root,KOG3187@2759|Eukaryota
Ec32 ortholog descriptionPutative tyrosine phosphatase
Ec32 orthologEc-10_003910.1
EC4.2.1.134
Description3-hydroxy-lignoceroyl-CoA dehydratase activity
Cds size720
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig779.27.1prot_P-littoralis_Contig779.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig779 108436..115999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791601.886599-UTR-P-littoralis_Contig779:107656..1084351680791601.886599-UTR-P-littoralis_Contig779:107656..108435Pylaiella littoralis U1_48UTRP-littoralis_Contig779 107657..108435 -
1680791601.9716635-UTR-P-littoralis_Contig779:115999..1160471680791601.9716635-UTR-P-littoralis_Contig779:115999..116047Pylaiella littoralis U1_48UTRP-littoralis_Contig779 116000..116047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791601.9002767-CDS-P-littoralis_Contig779:108435..1086121680791601.9002767-CDS-P-littoralis_Contig779:108435..108612Pylaiella littoralis U1_48CDSP-littoralis_Contig779 108436..108612 -
1680791601.9156063-CDS-P-littoralis_Contig779:109323..1094651680791601.9156063-CDS-P-littoralis_Contig779:109323..109465Pylaiella littoralis U1_48CDSP-littoralis_Contig779 109324..109465 -
1680791601.9287899-CDS-P-littoralis_Contig779:109758..1098711680791601.9287899-CDS-P-littoralis_Contig779:109758..109871Pylaiella littoralis U1_48CDSP-littoralis_Contig779 109759..109871 -
1680791601.939042-CDS-P-littoralis_Contig779:110407..1104401680791601.939042-CDS-P-littoralis_Contig779:110407..110440Pylaiella littoralis U1_48CDSP-littoralis_Contig779 110408..110440 -
1680791601.9567184-CDS-P-littoralis_Contig779:115744..1159991680791601.9567184-CDS-P-littoralis_Contig779:115744..115999Pylaiella littoralis U1_48CDSP-littoralis_Contig779 115745..115999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig779.27.1

>prot_P-littoralis_Contig779.27.1 ID=prot_P-littoralis_Contig779.27.1|Name=mRNA_P-littoralis_Contig779.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MSGARAKIGSNTETTAEQRGPSLTDAYLLLYNTGCAVGWNLILYKIGTAL
LEGGSVRDAVEATHDIVVALQLVSTLEFVHACAGLVRSNPMNIFMQVLGR
DLALFSVVTAFPPVRNSQWILLMFSAWATSEVIRYPFYALSIAGMCPPAL
QWLRYTAFIILYPLGFAGELGTWIVGLPHIKAVGLPGLPGLPEGSGMYVL
YAYIVFAFAIGAPKLYMHMIRQRKKQLGGAAGGGKAKAS*
back to top

mRNA from alignment at P-littoralis_Contig779:107657..116047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig779.27.1 ID=mRNA_P-littoralis_Contig779.27.1|Name=mRNA_P-littoralis_Contig779.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8391bp|location=Sequence derived from alignment at P-littoralis_Contig779:107657..116047- (Pylaiella littoralis U1_48)
AAGTCAACCGCAGCACGGCAGCACACCGGGGGTAGCAGGGGAACGAGAAT
GAGCGGCGCTAGAGCAAAGATCGGGTCAAACACCGAAACGACGGCTGAGC
AGAGGGGTCCCTCCCTCACAGATGCTTACCTGCTGCTCTACAACACGGGC
TGCGCGGTGGGGTGGAACCTAATCTTGTACAAGATCGGCACCGCGCTCCT
CGAGGGAGGCAGCGTGAGGGACGCTGTCGAGGCGACTCACGACATCGTCG
TCGCGCTGCAGCTGGTGTCTACGCTTGAGTTCGTGCATGCCTGCGCCGGT
CTGGTGAGTGAAGGGGGGGGGGGGGGGCATACTGTTTTCCGCGAGTGAGA
GAGGATATCCGCCCGTAGAAATATCTACCCGGAAACCTTTTCGCGGATGC
GTAGTCTCAACTGCAACCTGGTACTGCTGTACAACGGACTCCGCGTGTTC
CCCCGGTCCCCCGGTCTACACAACACGTCCCTAGCTACAGCAGCTCGCCA
CCCCAACACGCCGGCACTCTTTGCGAGTATCGAGTATGAAATGACTTCGT
ATCATACGAAGTATGTACGAAGCGCAGAATTTACCATCTGGACGGAAGGG
CCGTCGATACTACAGCAGGTAGCGCTTGACAAAGATGTGACGTGCTCTCA
GTAGAAATGCTATATCATACTTCCTCTGTATCATAAGTCTATGCCGTTAT
GCCGTTATGGGCGTGTAGTTGTTTGCGCATCCATACTGTTTCGATCATCC
TATAGTTAGGTTCGTTCGAAAGATAAAGTCTCAAAGAAGCTGATGCAAAA
AAAAAAGCAAAAAAAAAAGCCAGTTGTTTATACTAAAATGAAGTCAAAAT
ATGCCCATTTTGGCCCATTTAAAGAATTTTGATTCCGCCAGATGTCTTGG
TTTTAGAGCATGAGTCCCAAGTATATTCGTTTTAGTGTGGCAAACCCAAG
TGTCTTGGTTTTAGAGTAGCGTCACTATTATACTGATTTTAGTAAGGAGG
GACTCGACGTGAATCTTTGAGGTAGGCGGGCTAGGTTCAGCGTTAGGGAT
AATTTTGGGGGGGATTGCATTGGTTTTATTTTTTGCCCCCGCCCCCCACT
CCACCTCTGGAAAGGGTTAAATACGGCCATTTTTGGCCTGACTACTTTTT
TGTTAGCCGCTAGCCCATGCGCAGGGTAGTGCGCAAGAAAAATTTATACG
GAGTATAGGTGTTTCAACCCAAAAAACTCCGAAGATTTCGAAAAAATTAT
CGCCGAAGACATCGGACACCGTTGAGGGGGCGTAAAAACATAACGGCACA
GACTTATGATACAGAGGAAGTATGTATGATACGAAGTACTTCGAATGATA
CACGTGTGTTGTAATCCCATATTCTCTGGCACACTAGTCTGCACCCTGCG
GTTCAAACTACAGGCTAGGCCCATCGACGGGGCCATACAGGAGGAAGGTC
AACACAGGAGGAGTTACCGCCACCTTCCTTCTGCGGTACATGCGTGAGAT
TTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCG
AACCTGCTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACAC
ATTCACCGGGAATCGAATCCCCGTTCCTCTGCATCTAGTGGTTAACGAGG
GGACCACTAGTCCACCGGGGCGACCGGTGTACACGTATGTATGGTATGTA
CAAGCATACACCCAGTATTTGTCAATGAGCATGCCCTTCTAAGGCAGCAT
GCCGGTAGATAACAGCAGCAGTGCCCCCGCTGGTATCATGCAAAGTGTTT
GCGAAAACAAATACTCGTACAAACAGCGTGTGTGTTGTCTTCACACTACA
AAGCATTCCAATCTCTCCTCAGTACCTTCCAATGTCCGTACGCCTCCGAT
CATGGACGATTTCCGTGATGACAGGCTGCTTGCCCAAAAGGGGTACTGGT
ACTTCGTACTCGGAGTATACAGCAGTACGCGGGAGATCAGAAGGAAACTC
CAAGAAGAACGGACCCCGAACTATCACTAAACGTTACGAAAACAGGACAA
GAGAGGGAGCCTGTGGTCCGGAGTAAACTCAAAAATGAAATAAAGAGTGA
CAAAATAAACCGAATTCAGTTCCCAAAGGTGCCGAGAAAATGGACATCGG
GCTTGCAACTAACTTCACCGGCCCAGCGACAATTTCGGGCAACGCAAGCA
GATGCGAAAGTGCGAAAAGACAGAAGGGCACAAAACAGAAAAAACAATAA
TAAAAACTTTGAACGTAGTAACTCAGGCCACGGGAACACAACAGGGGGGA
GCGCACTGATGCGGGGGGGAAAGATGGAAAGGGTTAGTTCTATCACAGCA
GTGTCAGTCAGAAGCACAGTAGTAGTTTTGTACGAAGTATAACAGAGTAC
TTGAAAAGCAAAATCCTTTTGGTACAAGTACGAGGAAGGCGTTTCTTGCT
GGCAAGGTTGAAAATACCGATCGATCTTCCCCTGTATCCGATCGAGCATG
TTACTGCTGGAGATTTTCGATCCGCTGTTGTTACGGTGATCGCTGTTTCC
TACCATATTTTTTACTGCCGGCAAGAAGCAGCATAGCAGGATCATAGCAG
CAGAGAAGGGTGTTTTCGCTCCTGTAAGACCGGTTTGCACTTTAAGAAAC
TCATAGTTACGAAATGAACGGAGCCACAGCAATGACAAAGCCATTCCCCG
TGAGCTGTGTGTTTGATTCTTCACATGTGATGATCGTTTGAGCCCTCAAG
GGGTGGGTAGATGTGTAGGCTCGCAGTCAAGTCTGTTGTTGATGTGTATG
TGTGTCAAACACACGCTAAATATACTTCGAAATACAAGAAAGAGCTGCCG
TTGCTCCGCGCAGTCGAGGAGATTTTTTTCACCTTTGGCACCGGCTTTCT
TTGTCATCCACCACTCTCGAACGGATGCAGCCACAGCAATGCCAAAGGCA
CCTGCCGTGAGCTGTATGCATGTTCCTTGTCGTCTGGTGATCATTTAGGT
TAGGGTTACATTAGTACCTTCGCAAAAAGCTATTTCCTGTCTCAAACCGC
ACGTGGAAGATCTCAAGAAAGGCGTACCGGTCGGTGCCGCTGTACAACAG
AACATCGCTCCCTCGATATCTCTCTCTCTCTCTCTCTGTTTCTCTCTCTC
TCTCTCCCTCTGTGGTCGTTTACGACATGTGATTGTCACCAGCAATCTTG
TCAGCGAGCCTGGCGATGCCTCGCGGGCCTCAAACAAGCATAACACGAGA
GGGATCACACCCAAAGCCCAAGGTAGATACCCTTGTCCCTGCTGTGGCTG
TATTCATTCGAGAGTGATGGTGGATAAAAAAGTAAACCGGTGCCAGAGGA
AAAGGACAGTGATGGGCGGAGTAATGTAAAAATGTGAGGGCACACAGAAA
AAAACAGGCACCTGTGACACCCAGCACGTACTACATGGACAGCAGCAAAG
CAGCAGCAGCAGCAGCAGCAGTACCTCTCCTGCCCCTACTCTTGTTGCTC
TCCTTGCTTGGGTTGGTGGCCTGTGCTCGATATGTACACATATGTGTGTG
GGTGTGTGTGTGTGATGATGTTGGCAAGTCACCCACATCACTGATCATAC
CACAAACAGAGAGGAGACCCAAGCACAACGTTGCCGATCGCAAAAATCGA
TCGGTTGACCGCGTCGAAAATCCCTCAGATTTCGGACAGGAGTCTGATCG
ACAATGTCTTCTCGGAAATCTCAGGTCGGAAATGGGTCATTTTCGCCTCC
GTAAGACAAGTATTTTTGCTCTGGATCGATATTGGGTGATTTTCGATCGG
CAGTCGCAACCCTTATCAGAATCGCCTGAAACAAAACAAAAACCCACGGT
GAATCATACTTCGAAGTAGTTCTGTCTCTCACCAGAAGTTCGATTTCATT
TTGCAGAAACAGTTTTTTTTTTGAAAGGGGGGGCGCGATGCGAAAAAAGC
TAGGTACCCTCTAGTTCATCATCACCTACACCAAAACAACAAAAAAAACG
ACTACGAAGTATTTGGCCACAAAGGAACGTAAAGAGAGCGACTTCGTTTA
TTTATGTTTGTATTTGTGCGCAGATAGATTGAGCAACGCACACACACCAT
TGCTGCTGTAGATGAACCAGAACGCTACACAACGAGCCTTCTGGCTGCCG
CAAAAGTGGAGGCTGCCGGACCAGGCGAAGTACAGCCGCAAGACTCATCA
TTGTGTTGGCTCACCTACAGCAGCAGCAGCAGCAGCAGTGGGCATGGTTG
GGTGTACCGTGTGTTGTTGTTGCTATCATAGCACTGGGAGAAAGCTCGGG
ACATGCAACTCATGCACAACGATACAGTTTTGAGTCTTCCGGCTGTCGGA
GTAGCGGAGGGTGCGAAATCAGGCGAAGGGCAGCCAGAAGGTTCATCATT
TTGTAAGCTCTCTTACATACCCTGCAGTAGCAGCAGTAGCAGCAGTAGTG
TGTTGCGTGTGTGTTGCTCTGTGACAGGCAACAGCGTGTGTATGTGTTGG
GTGCGTGATCAGGCGAAGGAAATGCGACAAACATGGCCACCGTCTGCCAC
AGCAGCACCCTAGTCCGTAAACCCTCCCCAGCGTAAAGCGCGCCGTAGCG
CCGAGTGGTTCGAGCATCTACCTCTCTCTGATGTCGCATTGGTCTCCCTG
TACGAGTAGACTCCATAGCACCTATTTTTTCTACTGCTGTACGCCTGTTG
TTTCGCTTGGTGCATTGCCATCATCGGCCGACAGTGATTTGTTGTGACCA
CCATCGTGAGCCGCGGGCATACTTTATTCGGTTCGGATAATGCCGGGTTG
GTCTGACCAATCACATTGAGCTTCGACACGGCCTGGCTTGGCAGCTCAAA
TATCATTCTAAAATATCAGATGTTTCCGTAAAAATAGGAGATTTGGAAAC
GCATGTCTGTGCCGTCGCAGTCACGGTGCCGCTCGGGGGAACTCGGATCT
GATTTTGACATTAAAAAAAGTGTTTTCTTCAACACCCCTCGTACTGTTCC
AGTAATGCTGTACTTCGAAGTGTCATACAGCAGCATTAGTACCGTATGTA
CCGGTAGTGCAACGCCGCCGCCGCCGCCGTTGATTTTACCGGTTGCATTC
GAGCAAACGACGGTTTTGGTGTATCATAGGCGCCATTCTGATGGGTAAAT
ATCCTTGCAGGTGCCCTTATTCCTTGATGCCACCGCTCGATGGAGTTGCC
AAAGCTACTCGGAGTACATAATATGATACGAAGTATGCGTATAATATGCA
GCAGTAGTACACACATGCACCCGTGTGTAAAACCCGCACTCCGTGTGTGC
GCATCATGCTGCAGGCACAAATGCGTGCACGTAACGTGTACCGTGTATCC
CCCTTCTCCCTTGAGTTTTAACGAAGCTGGCGTCCATGTACCCGGATGGC
GCGGTTGTGTCGTTGCGGCCCCCTCTCGCGGCTACGAGGTGATACCCCGC
TCGCTGGCGATGCCATGGTGAAAAAAAAACTGTTCGCCCTCACAATATCA
TGCTTCGAATCGTTTTGTTTAATTTCCTCTCCTGCTGCTTGCACCGCCAC
ACGCTCAACGCATCGTTTTTACCCACAACGCGGATGCACACGCGCACGCA
CGCACAGGTCAGGAGCAACCCCATGAACATCTTCATGCAGGTGAGATGAG
AACTTGCGTGAGGTTTTGTGTTGGCACGCATGCACGTCGGAAAAGGATGA
CGGTAATTGCTTGCGCGTACGTGGGCGTTTTCCGTGCCGATGCAGAGCCC
GCACGGCGGCCGAGAATTCCCATGGTAAAGATTCGTGTGAGCTTTGTTCG
TTGGGAACCAACAGACGCCATGTGGTACAAAGGGGCAAGTTTAGGCCGCG
AAGGGAATGGCAGCGAGCGCTGAATTGTTGTTTCTTTGCGCGGCGGGATG
TCTCGATTTTGACAAGAGCAAAATGTTTGAGTTTTTTATCTATGCTCGTG
GTCTCTGGTACTCTCGCTGATCCACACGTTTGTAACCCTCTCGACACACT
CGCTAGACCCACACGCGTTACGAGTGACTGATTGAACAAACTTGCGCTTT
TGTGTTACGTTTTGGCCGATCATCTCATATCACCTCTGAAATGCCTTGCA
ACTATTCATAACTCCCTTTGCCTTTTTTTTGTTTTGTGTTACCTGTTTTC
GGGGTTGTGTCCTGTGTGTACAACAGGTGCTCGGGCGAGATCTAGCGCTC
TTCTCGGTGGTAACAGCCTTTCCACCAGTGCGGAATAGCCAGTGGATCCT
CCTCATGTTCTCGGCATGGGCAACGTCGGAGGTTATCAGGTACGAAGCTG
CCGTAGACCATGGTTGATACCTTGTACCCTCGACACACGGGCTTCGACAA
ATACGTTTAGTCCTAAAATACCCTCATGGGCAACGTCGGAGGTTATCAGG
TGCGAAGCTGCCGAAGACCATGGTTGATACCTTGTACCCTCGACACACGA
GCTTCGACAAACACGTTTAGTCCTAAATTGCCCTAAAAACCGGCACCGTT
TCGTGTCACGTTTCTTGCTGGAGTGTTGCGCTGCTCTGATACTTGCATGC
TGTGCGCCCGCCCCACCGTTGGCTTGCTGAAGATACCCATTCTATGCTTT
AAGCATCGCGGGCATGTGCCCCCCGGCACTACAATGGCTTCGATACACGG
CGTTCATAATCCTGTACCCCTTGGGCTTCGCTGGAGAGCTAGGAACATGG
ATCGTGGGTCTTCCACACATCAAGGTGGGTAAAATCTGGATGCGCCAGGG
CTGTTGCTTTCCTGCTTGTAGCAGCTGTGGCGGCGCCGTGTACCGTAGGT
TGCATAAAAAACCACACCGGTGCGATATAATAACAGTTTTGAGTTTAAAA
AAAGATGGCACCGGTGTGGTCTTGTGTGATTTTGACTGGGGGTGAGGTTA
CTTCTGTCACTTTTTACTGACTTGAGACAGGCTGGCGCCTTTTTCGGGAC
TGAAAAAAATAGCAGCACACGGGTTTGGTATTGTGTTACTTTTCGGAGGG
GGTATGGTATCTTACGTATGAAAGTGTGATATCTTATGCAACCTACGGTA
CTGCTCTTGGCGATCACCCACCGCTTAATCAGTTGCAAGCTTTGCAGAAA
TTGTAAAGCGGGCTGGCCTGCTTTCTGCTTTCTGCTTTACGAAAAAACCA
TTCACTGGTGTCCCGAGTATCGTACTGGTGTTGCGTTTACCCGTCATCGT
AGACTTCTCGCAGGTCAAGTGATGGGCAGTTTGCGACCGCGGCGTGCAGA
GAGTGACACCCACTGATTCCCGGTCTGATTGGCGTGCGGCGTTCGGAGAC
GCTCGGCGCACTGCACTGTTGCTGTCGGCGCTGTGTCTATCTTCGCCGAT
TATTTCTTCGTTCTCGCTGCATTTTTAATCCGGCTAAAACGCACGCGCAC
ACGCAAACTCTCGAACACTGTTTTTTGTGAAACAGGCCGTTGGCCTGCCC
GGTTTACCAGGGCTGCCCGAAGGGTCCGGCATGTACGTCCTGTACGCCTA
CATCGTTTTTGCGTTCGCAATAGGCGCACCCAAGTTGTACATGCACATGA
TCCGCCAGCGTAAGAAGCAGCTGGGAGGGGCGGCCGGGGGCGGGAAGGCG
AAAGCTTCATGATTACGTCGCGGGGGCTTGCTCGCTGGCTGCGTTGTACG
TACAGATCCGCAGCGCTTGCTCCGCGTGGGTGTTTTTGCTGTGCTTGTTT
CGGGAGGGCTGCTCGAGCCGATAACACATTTTTGCGATACTTCTGCTGTA
TTGGAAGTGTTTCGAGATATTAGAGGCTGGTCTCGTGGGCAAGTAAACGT
GGCTTGCCGTATCGACGCTTTTGGGAATGCACCAGCGTTGCCGCATGTCG
TATTCGTAGTGACCGAAGATTGACTGCGGATTCGGTTTATGGCTCGTGCT
GATGCGGATTGCAACGCGGTATACATCATGGGCAGCGTCGCCGACAGCTA
CTCCGATTGATTCGGGTTAGTGCGATACAGTAACTGGAAGAATCAAGCAG
TCGACCAGCTCTCGATGGCAGATCGACCAAACCAAGTACACCCTTCACAA
ACGCAAACGCAAGGCCATCGGACCGCCGTGACTGTTGGAGAGTTTGCTAA
TGTTGTCTTGGTGTGGAAGCGATGGACTTTCGCTGCAAATGGCGCCGTCT
TCGTGCACGCACCGCACGTCTGTTTGTTCGTTGAGGGGGTGGTGATCGTG
AAACATTAGCACACAGATACTTATGGGTTTGCGCCCGGACAGGTGGTAGT
AGAGTACATCGGGGTTTTCTGCGGAATCAACCTTTGCGGAGGCATTAGCT
GCTTCGCGTCATATGAAAAAGTGGAGGGAGGTGATATCTGATATCTGCCT
ATAAAGGGCTCACACCTCGGTGTCAAAAGGTATTTTACCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig779:107657..116047-

>mRNA_P-littoralis_Contig779.27.1 ID=mRNA_P-littoralis_Contig779.27.1|Name=mRNA_P-littoralis_Contig779.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig779:107657..116047- (Pylaiella littoralis U1_48)
ATGAGCGGCGCTAGAGCAAAGATCGGGTCAAACACCGAAACGACGGCTGA
GCAGAGGGGTCCCTCCCTCACAGATGCTTACCTGCTGCTCTACAACACGG
GCTGCGCGGTGGGGTGGAACCTAATCTTGTACAAGATCGGCACCGCGCTC
CTCGAGGGAGGCAGCGTGAGGGACGCTGTCGAGGCGACTCACGACATCGT
CGTCGCGCTGCAGCTGGTGTCTACGCTTGAGTTCGTGCATGCCTGCGCCG
GTCTGGTCAGGAGCAACCCCATGAACATCTTCATGCAGGTGCTCGGGCGA
GATCTAGCGCTCTTCTCGGTGGTAACAGCCTTTCCACCAGTGCGGAATAG
CCAGTGGATCCTCCTCATGTTCTCGGCATGGGCAACGTCGGAGGTTATCA
GATACCCATTCTATGCTTTAAGCATCGCGGGCATGTGCCCCCCGGCACTA
CAATGGCTTCGATACACGGCGTTCATAATCCTGTACCCCTTGGGCTTCGC
TGGAGAGCTAGGAACATGGATCGTGGGTCTTCCACACATCAAGGCCGTTG
GCCTGCCCGGTTTACCAGGGCTGCCCGAAGGGTCCGGCATGTACGTCCTG
TACGCCTACATCGTTTTTGCGTTCGCAATAGGCGCACCCAAGTTGTACAT
GCACATGATCCGCCAGCGTAAGAAGCAGCTGGGAGGGGCGGCCGGGGGCG
GGAAGGCGAAAGCTTCATGA
back to top