mRNA_P-littoralis_Contig779.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig779.26.1
Unique NamemRNA_P-littoralis_Contig779.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A6H5JGP1_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP1_9PHAE)

HSP 1 Score: 446 bits (1146), Expect = 1.110e-153
Identity = 231/238 (97.06%), Postives = 234/238 (98.32%), Query Frame = 1 
Query:   85 MTGTMSTGLRSPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 798
            MTGTMS GLR+PG T+ LGREARTYRRLST KSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMY+MMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK
Sbjct:    1 MTGTMSPGLRTPGTTSVLGREARTYRRLSTTKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 238
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BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: D7FX14_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX14_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 1.190e-140
Identity = 228/266 (85.71%), Postives = 231/266 (86.84%), Query Frame = 1 
Query:    1 MVRAFCAVVGALLAVGQATAFFGSTSAFMTGTMSTGLRSPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 798
            M R FCAVVGALL VGQATAFFGS SAFMTGTMS GLR+PGAT+ALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAK                            VEATQIM IRDNIVRMY+MMTGQTQEQITIDLDRDNFMSAQAAADYGLVD VIKLSKK
Sbjct:    1 MARGFCAVVGALL-VGQATAFFGSPSAFMTGTMSPGLRTPGATSALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAK----------------------------VEATQIMHIRDNIVRMYAMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDNVIKLSKK 237
[Close]
BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A835Z885_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z885_9STRA)

HSP 1 Score: 379 bits (972), Expect = 6.240e-127
Identity = 191/244 (78.28%), Postives = 221/244 (90.57%), Query Frame = 1 
Query:   67 GSTSAFMTGTMSTGLRSPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 798
            G+ S +++G+MS GLR P   ++ G    +Y+R     SGAASTVMMPIGVPKVAYRVPGAP+ADWVDIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSEDSTKPIY+YVNCPGGSVIAGLA++DTMQHI+SEV+TIN+G+AASMASF+LAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMY+ M+G+TQE++T  LDRDNFMSAQAA ++GL+D +I+L K+
Sbjct:   24 GAHSTWLSGSMSAGLRMPAVPSSTGLSKASYQR-----SGAASTVMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYMYVNCPGGSVIAGLAIYDTMQHIKSEVITINMGMAASMASFLLAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYAQMSGRTQEEVTRALDRDNFMSAQAALEFGLIDQIIELKKE 262
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BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A7S2CF89_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CF89_9STRA)

HSP 1 Score: 351 bits (900), Expect = 5.190e-116
Identity = 175/212 (82.55%), Postives = 197/212 (92.92%), Query Frame = 1 
Query:  163 RLSTAKS-GAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSK 795
            ++STA + GA   VMMPIGVPKVAYRVPG+P+ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGV+LYLDSEDS+KPIYLY+NCPGGSVIAG+ALFDTM HI+S+VVTIN+GLAASMASF+LA G KG RMALP+SRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMY+ MTGQTQEQI IDLDRDNFMSAQ A +YGLVD VI+LS+
Sbjct:   51 KVSTANTAGAGGLVMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSSKPIYLYINCPGGSVIAGMALFDTMNHIKSKVVTINLGLAASMASFLLAGGEKGSRMALPNSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYAQMTGQTQEQIIIDLDRDNFMSAQQAMEYGLVDQVIELSE 262
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BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A7S1TU42_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU42_9STRA)

HSP 1 Score: 350 bits (898), Expect = 8.150e-116
Identity = 179/242 (73.97%), Postives = 204/242 (84.30%), Query Frame = 1 
Query:   70 STSAFMTGTMSTGLRSPGATAALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSK 795
            S S F TGT++ GL +P A    G             SGA S VMMPIGVPKVAYRVPG+ +ADW+DIYNRLYRERIIF+GQEIDDE ANQIIGVLLYLDSED  KPIY+Y+NCPGGSVIAG+A++DTMQHI+++VVTINVG++ASMASF+LAAGAKGKR+ALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSMMTGQTQEQI  DLDRDNFMSA  A +YGLVD +I + +
Sbjct:   20 SASRFTTGTLNAGLYAPSAAGVRGT------------SGAGSMVMMPIGVPKVAYRVPGSGSADWIDIYNRLYRERIIFVGQEIDDEFANQIIGVLLYLDSEDPDKPIYMYLNCPGGSVIAGMAIYDTMQHIKADVVTINVGISASMASFLLAAGAKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMMTGQTQEQIVKDLDRDNFMSAAQAQEYGLVDQLIDVQE 249
[Close]
BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A0G4F8U0_VITBC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8U0_VITBC)

HSP 1 Score: 350 bits (898), Expect = 3.870e-115
Identity = 172/209 (82.30%), Postives = 190/209 (90.91%), Query Frame = 1 
Query:  163 RLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKL 789
            R   A SG  S  MMPIGVPKVAYR+PG+P ADW+DIYNRLYRERIIFLGQEIDDE ANQIIGV+LYLDSEDSTKPIY+Y+NCPGGSVIAGLA++DTMQHI+SEVVTINVGL+ASMASF+LAAG KGKR ALPHSRVMIHQPMGGAQGQAEDIKVEA QI+RI+DN+V+MYSMMTGQT+EQI  DLDRDNFMSAQ A +YGL+D VI L
Sbjct:   78 RSPAASSGVGSLKMMPIGVPKVAYRIPGSPNADWIDIYNRLYRERIIFLGQEIDDEFANQIIGVMLYLDSEDSTKPIYIYMNCPGGSVIAGLAIYDTMQHIKSEVVTINVGLSASMASFLLAAGTKGKRFALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKDNLVKMYSMMTGQTREQIIKDLDRDNFMSAQQAKEYGLIDHVIDL 286
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BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A7S2S0Z5_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0Z5_9STRA)

HSP 1 Score: 347 bits (890), Expect = 1.870e-114
Identity = 169/208 (81.25%), Postives = 190/208 (91.35%), Query Frame = 1 
Query:  175 AKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 798
            A+ GA   VMMPIGVPKVAYR+PG+P+ADWVDIYNRLYRERIIFLGQEIDDE+ANQIIGV+LYLDSEDS KPIYLY+NCPGGSVIAG+ALFDTM HI+S VVTIN+GL+ASMASF+LAAG +G RMALPHSRVMIHQPMGGAQGQAEDIKVEA QIMRI++N+VRMYS MTGQTQEQI  DLDRDNFMSAQ A +YGL+D +I+ + K
Sbjct:   60 ARQGAGGLVMMPIGVPKVAYRIPGSPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIGVMLYLDSEDSKKPIYLYINCPGGSVIAGMALFDTMNHIKSPVVTINLGLSASMASFLLAAGKRGSRMALPHSRVMIHQPMGGAQGQAEDIKVEAAQIMRIKENLVRMYSQMTGQTQEQIIRDLDRDNFMSAQEALEYGLIDKIIETTDK 267
[Close]
BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A7S2NSD7_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSD7_9STRA)

HSP 1 Score: 346 bits (888), Expect = 6.980e-114
Identity = 174/223 (78.03%), Postives = 194/223 (87.00%), Query Frame = 1 
Query:  130 AALGREARTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 798
            A+LG+  +      T K   +   MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLD ED+TKPIYLY+NCPGGSVIAGLA++D M HI SEVVTINVGLAASMASFILA G+KGKR+ALP SR MIHQPMGGAQGQAEDIKVEA QIMRIRDNIV+MYSMM+GQTQEQIT DLDRDNFMSAQ A +YGLVD V+++ ++
Sbjct:   58 ASLGQRTKMVTATPTGKPTRSKITMMPIGVPKVAYRVPGSNSADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDQEDNTKPIYLYINCPGGSVIAGLAIYDCMNHIASEVVTINVGLAASMASFILAGGSKGKRLALPSSRTMIHQPMGGAQGQAEDIKVEAAQIMRIRDNIVKMYSMMSGQTQEQITTDLDRDNFMSAQQALEYGLVDRVVEMPRE 280
[Close]
BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: A0A7S0KYD1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYD1_9STRA)

HSP 1 Score: 343 bits (879), Expect = 7.990e-113
Identity = 166/199 (83.42%), Postives = 188/199 (94.47%), Query Frame = 1 
Query:  202 MMPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLSKK 798
            MMPIGVPKVAYRVPG+ +ADWVDIYNRLYRERIIFLG EIDDELANQIIGV+LYLDSEDS+KPIYLY+NCPGGSVI+GLA+FD MQHI+SEV+TIN+GLAASMASFI+AAG+KGKR+ALP SR+MIHQPMGGAQGQAEDIKVEA QIMRIRDN+V+MYSM TGQTQ+QIT DLDRDNFMSAQ A +YGL+D V++ SK+
Sbjct:   62 MMPIGVPKVAYRVPGSQSADWVDIYNRLYRERIIFLGSEIDDELANQIIGVMLYLDSEDSSKPIYLYINCPGGSVISGLAIFDCMQHIKSEVITINLGLAASMASFIMAAGSKGKRLALPSSRIMIHQPMGGAQGQAEDIKVEAAQIMRIRDNLVKMYSMFTGQTQDQITRDLDRDNFMSAQEAVEYGLIDRVLEYSKE 260
[Close]
BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Match: F0YKH8_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YKH8_AURAN)

HSP 1 Score: 338 bits (867), Expect = 4.820e-112
Identity = 161/196 (82.14%), Postives = 185/196 (94.39%), Query Frame = 1 
Query:  205 MPIGVPKVAYRVPGAPTADWVDIYNRLYRERIIFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFDTMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGAQGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQAAADYGLVDTVIKLS 792
            MPIGVPKVAYRVPGAP+ADW+DIYNRLYRERIIFLGQEIDDELANQIIGV+LYLDSEDSTKPIYLY+NCPGGSVIAGLA+FDTM HI+S+VVTIN+GL+ASMASF+L  G KG R+ALP+SRVMIHQPMGGAQGQAEDIKVEA QI+RI++N+V++Y+MMTGQTQ+QI +DLDRDNFMSAQ A DYG++D VI +S
Sbjct:    1 MPIGVPKVAYRVPGAPSADWIDIYNRLYRERIIFLGQEIDDELANQIIGVMLYLDSEDSTKPIYLYINCPGGSVIAGLAIFDTMNHIKSKVVTINIGLSASMASFLLCGGTKGSRLALPNSRVMIHQPMGGAQGQAEDIKVEAAQIIRIKENLVKLYAMMTGQTQDQIILDLDRDNFMSAQEACDYGIIDKVIPVS 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig779.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP1_9PHAE1.110e-15397.06ATP-dependent Clp protease proteolytic subunit n=1... [more]
D7FX14_ECTSI1.190e-14085.71ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z885_9STRA6.240e-12778.28ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2CF89_9STRA5.190e-11682.55ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1TU42_9STRA8.150e-11673.97ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A0G4F8U0_VITBC3.870e-11582.30ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2S0Z5_9STRA1.870e-11481.25ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2NSD7_9STRA6.980e-11478.03ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S0KYD1_9STRA7.990e-11383.42ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YKH8_AURAN4.820e-11282.14ATP-dependent Clp protease proteolytic subunit n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig779contigP-littoralis_Contig779:101393..107733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009040903.1
Preferred nameclpP
PFAMsCLP_protease
Model size1471
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009368,GO:0009536,GO:0009987,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051603,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons7
Evalue2.14e-116
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit
Ec32 orthologEc-10_003920.1
EC3.4.21.92
Descriptionserine-type endopeptidase activity
Cds size801
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig779.26.1prot_P-littoralis_Contig779.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig779 101393..106914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791601.7703795-CDS-P-littoralis_Contig779:101392..1016171680791601.7703795-CDS-P-littoralis_Contig779:101392..101617Pylaiella littoralis U1_48CDSP-littoralis_Contig779 101393..101617 +
1680791601.7851934-CDS-P-littoralis_Contig779:103362..1034971680791601.7851934-CDS-P-littoralis_Contig779:103362..103497Pylaiella littoralis U1_48CDSP-littoralis_Contig779 103363..103497 +
1680791601.7972999-CDS-P-littoralis_Contig779:104289..1044691680791601.7972999-CDS-P-littoralis_Contig779:104289..104469Pylaiella littoralis U1_48CDSP-littoralis_Contig779 104290..104469 +
1680791601.807205-CDS-P-littoralis_Contig779:105457..1055411680791601.807205-CDS-P-littoralis_Contig779:105457..105541Pylaiella littoralis U1_48CDSP-littoralis_Contig779 105458..105541 +
1680791601.8170269-CDS-P-littoralis_Contig779:106118..1062081680791601.8170269-CDS-P-littoralis_Contig779:106118..106208Pylaiella littoralis U1_48CDSP-littoralis_Contig779 106119..106208 +
1680791601.8348281-CDS-P-littoralis_Contig779:106827..1069141680791601.8348281-CDS-P-littoralis_Contig779:106827..106914Pylaiella littoralis U1_48CDSP-littoralis_Contig779 106828..106914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791601.8477917-UTR-P-littoralis_Contig779:106914..1072501680791601.8477917-UTR-P-littoralis_Contig779:106914..107250Pylaiella littoralis U1_48UTRP-littoralis_Contig779 106915..107250 +
1680791601.856806-UTR-P-littoralis_Contig779:107399..1077331680791601.856806-UTR-P-littoralis_Contig779:107399..107733Pylaiella littoralis U1_48UTRP-littoralis_Contig779 107400..107733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig779.26.1

>prot_P-littoralis_Contig779.26.1 ID=prot_P-littoralis_Contig779.26.1|Name=mRNA_P-littoralis_Contig779.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=267bp
MVRAFCAVVGALLAVGQATAFFGSTSAFMTGTMSTGLRSPGATAALGREA
RTYRRLSTAKSGAASTVMMPIGVPKVAYRVPGAPTADWVDIYNRLYRERI
IFLGQEIDDELANQIIGVLLYLDSEDSTKPIYLYVNCPGGSVIAGLALFD
TMQHIRSEVVTINVGLAASMASFILAAGAKGKRMALPHSRVMIHQPMGGA
QGQAEDIKVEATQIMRIRDNIVRMYSMMTGQTQEQITIDLDRDNFMSAQA
AADYGLVDTVIKLSKK*
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mRNA from alignment at P-littoralis_Contig779:101393..107733+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig779.26.1 ID=mRNA_P-littoralis_Contig779.26.1|Name=mRNA_P-littoralis_Contig779.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6341bp|location=Sequence derived from alignment at P-littoralis_Contig779:101393..107733+ (Pylaiella littoralis U1_48)
ATGGTGCGTGCATTCTGCGCCGTTGTCGGGGCGCTCTTGGCGGTGGGTCA
AGCCACCGCCTTTTTCGGATCGACCTCGGCCTTCATGACGGGGACCATGT
CGACCGGCCTCCGGTCGCCGGGAGCGACGGCGGCGCTCGGGCGGGAGGCG
AGGACGTACCGGCGATTGTCGACGGCCAAGTCCGGGGCGGCATCCACCGT
GATGATGCCCATCGGGGTCCCTAAGGTGCGCTGGGTGCTATCTTACATCA
TATCGCATCATAGACTGAAGATATCATACAAGTGGTGTGGGTGTGCAAGA
TGATTTAATATCATGCTACAACAATGCCCAAGTTTTTCTGTGTGTGTATG
GTGTGCTTATCAAAAAGATATGCATGTGTGTTTTTCCGAGAGCAGATGAG
TAAACAAAATTCGATCGTACCATCGACGAGGGAAAGGGATTGCTGTCCCC
TTTCTCCCGATGAAAGCTCAACCAAAAAGGCAAGCACCGCGGAGGGAAGT
GGAGAAAAAAAAAAAAACTCCTGTGTTGACTTCCCCCTGTGTGACCCCAG
TTGGAGCGTCTACCTACCCGAAAGGTGCAGAGTGGCGTCCAATTAAAGGG
ATGGCAACACACAACACACACAACACAGATACACTTGGAGGCAGCGTTGC
AAAAGGTTTTCGTACGGCCATGTGAGACGGGACAGGCGGGGACATGTTGT
TTTCATCGCGTGGGCGGTTTCTCCCTTACAGCAGCCCGGCCAGGAAGCGA
ACAGCTGCAAAACCATATTGTATCATGAATGAAACATCATAACTGCTGCT
GCTCGTGAGTACTGGTATGCACACTGAACAGTTATCGTACCGGTTCCGTA
CTCCCTTGTACTTCCAGAGACGGCGCAACCCGACTGACCAGTGAAGAGTA
GAGGCCTCAGCTCGAGCGGGTCAAACACCAAGAAGCACCCTTTCTCTCCC
TCTCTCGCTCTCTCTTTGTGTCTCTTTATGTCTCTCCCTCACTTTGTGTA
TGTGAAGCTTTTTTACCCGTGTTTCGATCGCGCACACGTGTCGCAGACTG
ACGAAATGCGAGTTCATCGTAGGCGTTGCAGATCTTTTCGTTCGCGAAAC
CCATTCCCATCGTTTTTTACATGCTGAACATTGAGCTTCGTTCGGCGCTG
GACGCTTGAAATCTGGCGAAACCGAGTAAACAACCCCTTTCACCACTAAT
GCAAAGCTATGGTTGTGTAGATCAAGGCATGAATTAGTTCCTACACTGCT
GAACCATAGTGTATCAAGGGATCGTGCCTCTGCAAGTCCTCCATGATGGG
CATTGTTGTATAGTAACGGCGACGGTTGTGACTTTGCCGCAGGAACCAAA
ATTACGGGATACGGGATACAGAACACTAAGTCTACCACATCCTCACCGGA
GTTGCATTTTTGGTAGGACCCCCCGAAAAAGCCGTTCGAAACACGGTGTC
CCGGGGTAAGTGCGCTGCGTGTGTGCGGGGCGTCACATTTGGTATCGACC
ACAGGGTCAAGTTTCTGAAAGGGGCGACGACACATTGCAGCAGTAGCACA
TATGTACACACACGGTGCTCTGATTGCCGTGTGTCTTACAAACAAGAGTT
GCGCGGTGTTGTGCACTCGAGATTACTAGGAGTGCTGGTACTGCGACTTC
TGCGATACGTTCTGCAGTTGTATATCATGCATACCGTACTTGGTGTCGCG
AAAGGCGTACTAGCGAAAAGTGCAGCGAGCGCTCGCTGGCTCTGGCGACG
GACGGACGGACCGGCGGCTGCTGCTGAGCCACCGGTGGTGCTGCTCGGGC
ACGCACAAAGAGAGCAACACCCAGGTTATTTATAAATAGCGTGGGTGTTT
AAATTTATTACCTAGGTTGAGCCATGCACCACAAGCAGGGAGACATACAG
GAGTAGCGCAACTGATTATGTACGACCGATCGACCCCGAACCGCGTTGTG
CGTGTGTTCGTGTTTTCAAGGTGGCGTACCGAGTACCAGGGGCGCCCACG
GCGGACTGGGTGGACATCTACAACCGCCTCTACCGCGAGCGCATTATTTT
CTTGGGGCAGGAGATCGATGATGAGCTGGCCAACCAGATAATCGGAGTGC
TGTTGGTGCGTGCGCCTTCGAAGTCTTGGGTGTACCCGCCGAGTCGAATG
TTCATGTTTCATCGCTGCCGAAATTAATAAAATGTGCTACTCATGTGGAG
AGGCATTCGCTCTAGTTGTTGTCTGAACTCGAGTGTATGTGCTGCCGTCT
GTAAAATGTCAGTGTGCTTGCCATCGGGGTATCCCGGGTAGATGGCATGT
TTTGTTTTGTCTTTTTCTCGTCGTTGAGGACGGCCAGGCGAATCGATCCC
GAGAACGGAAGTTCTCAAAGGAATGGAAGGGGTGCTGACGGCGCTGGAGC
TCGTCTTGTTTCTGCTGTTGCTGACGCACACGATGTGGCATGCCGGCCGA
CCACCGTTTTGTATGATACTTCAACGCTGAAGTGCTGTAGGCGCGCTGTA
GTGCACCAGCCATGTTCGCGATCATCCTATCCCTCACTAGCGCGATTCCA
ATGCCAGCTGTCGGCCCAACTGCTCCAAATCGCATTTTTTTTAACTTGTT
GTTCCTTCTTCGAACAAGCGTTATTTTCTGTTCCATCTTTGCCAACCTCG
CATTACTTCGAAGTACAACTTACCGACATGGTCCTCTCGGACCTCGCATT
ATCTGGACTCTCAGAACACCGCACGCACCGACATCTTAGCCCTACCTGCG
ACCAATCACCTCCGCAAGAAGTTTTTTTTTGTCACGTCACACTGGTGTGC
TTCTTTTCACACACAGGCACCCTCCGTAACTCGACCCCCGACCCCCTGTT
TCGGATGTCTCGTGTGCGTTTGCGTGCCCCTTGTGCGCGCCTCGCAGTAC
CTCGATTCCGAGGACAGCACGAAGCCCATCTACCTGTACGTGAACTGCCC
CGGGGGCTCCGTCATCGCTGGGTTGGCCCTTTTCGACACCATGCAGCACA
TCCGCTCGGAGGTGGTGACGATCAACGTCGGGCTGGCCGCCTCGATGGCC
TCCTTCATCCTCGCCGCAGGAGCGAAGGTGAAAAAAGTGTTGCATGTGGC
GCACGTCACTGTCCCCTTCCCAAACCTCACACCCCACACCCAAACCCGAC
CACCCCCGGTCCCTCCGTTGAAGATGATAAAACACGCGACAGAAAGACGC
GCACGGCTTCCTTTCTCGGACGCGTCCGGGCCAATGATTGTTTTGGCCAC
CCAGGGTTGTTGTTTTGTCTGACGAGTTTAACTTTTTAGTGTTCACTGCA
GGACCCGCGTCAAACGGGACCTTGACGATGTTGTCCCGGGAGCTGGGTTG
ACCGACCGATAGAGGGATATCGCAGGCTCATGCGCTGTAGCGTCGGTATA
TTGTTTGTGTTCCTTTCTCTCTCGCGCTGATACTGCGACGCGACAAGCAA
CTGCCCTTGAACTGATTGTTCCACGCACGCATTTGTGCAAAAAAGAAATA
GTTTTTGTTTTGGAGGCCCTTGCATTTTTTGCTGACAAGTCAAAATTGCT
GTCCCGTGTGTAGTACTTACGTTCTCAGCTTGTCTATTAATATAATAGCT
ATTTGAAGCGAAGCTTGCACGGTTGATTTTTTTTTATGATACCACACAAG
AATAAAACAGGCAAGCAACGCAGTGGGGAAGGGGAGAAAAAATAAAGCAA
AGTATCGTGTGTTGACTCCTTCTGTGTGACCCCGCCTGGAGCATCTACCT
ACTTGATCGAAAGGAGCGTAAAGAGGCGTCTAGAATAGATGGGACGACAA
CAATCCTCACACACTTTTGTCCGTGTGTCCCGCATCAGCGTCGTCCAACC
GCTCTCAAAACATCGCCCGCCTGCCCGATGACCCTCTCGCCCACCGTCCA
AACTACCTTTTTCAATACTGACGGTCTCTGGGCTGCGCCATCTCCCTCCC
TCCAACTCTTTTTTTTGTTTTTGTCGGTCGGTGGTGGCTTGCTTTTGGCA
TCCGCTGCGTTGCGGTGCTCACTCTTGAATGCCGTCCATTGTACTTCCAC
TCGCCAAACGTGCAGGGGAAGCGTATGGCGCTGCCGCACTCGCGTGTGAT
GATTCACCAGCCTATGGGGGGGGCGCAGGGCCAAGCGGAAGACATCAAGG
TGCGTAGGAAGGGGTCGGAGTTGTGGTGGAAGGGATGGGCAGAGGAAAGT
TTGAAAAGAAGGCGATGGGTAGGGGGAGTGTTGCCGTGGAGTGTTGCCGT
GGGGCCGGGGGACAAGAGGACGTCGTGCATTTCACGGTGCATCCTCCTCT
CGTTTTCTTGCTCCGTCGAACGAAGAGCCAAGCCACTGGCGGTGGCTCCC
AAGTTTATAGTGCCGCTGTCGTTTGTTGTTAGTGGCCTCAAGAAGGGAAG
GAACGTTTTTTTTTTTTTTATCAATCCGTTCCGGTTAAGAGGTGCCTTCA
TGTGCGGTATGGTATAGAGCGGGTGAAAAAAAAGGGCCCGCCGGGGTGGA
AACATGAACGAAACCGCGTTCTACTCGGGTGTTGCCAAGAAACCCGAATT
TTTCGGGCTTCCCGGTGTTTGGTTATTTCTTCTTCTATTTCCCCTTGTCT
TTTTTTTTTGTTCCTTTGTTTAAGCATTTGCCCTGCCCCGCCTTCCTTCT
CTCTCTGTTTGGACCGTTGCCTTCCCTCGATTGCTGTTCGTCCGGCCGTG
CGGGAAACACGCGACACAACTAACAGGTGGAGGCGACCCAGATCATGCGC
ATTCGCGACAACATCGTCCGCATGTACTCCATGATGACCGGGCAGACGCA
GGAGCAGATCACCATTGTGAGATATTCCCAAGTTTTAGATATTCGCTCGA
CTCCACGCTAACGGGTTGAAACTCTCGAAGTTGTGTGCCCTTATTAGACG
TCCCTCATTGCTATGCATCTTCGAGGAAGCTGTTTTGTGTCATAATTCGA
TGTATGAAATCATCCCGCATTTCGGGGGACTCATTTTGCCGCGGGTGAGC
ATCTTATTGGAGCCTTCCTGGTGTGTAGAGTATCGCGTATAAGGTTTGTA
TCACAGCCTTGAGTTTTTCAGTCAGTTCATCCGTACTTTTTTGTTTCGTC
CGTCCTGAACTTTGATGCCCGTGCTGTTGGGGACGCTTCCTCGGCTGTGA
TTTCTGTTCTCGTACGTATTCTAACACGACACAACACCAAGGGGTACCGG
AGTTTGTCTTTCACTAGAAGTGCGCTTGGGGTGTGCGTGGCGATTTTGTT
GTTGAATAACACATCATGACAAGATGGGGAATTTTTCTCAAGTAACCACC
CGGCCATGTTTTCCTGTTTCGTGTGTGACACGCAGTTGTAAAGCGCCCCT
CCGTTTCCCCCACCGTCGTCGTCGTGACCACGCCTCTGTTTTGTTGAAAC
CCCCTACCGAATCTACTGCCTTTGGCGTCAACCAGGACCTGGACCGCGAT
AACTTCATGTCGGCGCAGGCCGCTGCGGATTACGGCCTCGTGGACACCGT
AATAAAGCTGTCCAAGAAATAGTTTGTTTATTTATGACGTACTGGTTAAT
GTTTGGATGGCAGCTTGATGAGCGTGTCACACTGATGAGTTGCTACGTAC
GTACGCAGCGGGGGGTTAGTGAGGAGGACTGGCCCACCTGGCGCGTTGGG
GCTTCTCTTCTTTTCTCCATTCTTTTCAGAAATTTTGGGAAGGTTTGTCG
AGGCAGGACAAAGTCCCTCTCTACGTTTGGATACAAAAACAATGCACTGC
TGTTTGTTGGTTGGTGCTTTTGTTTGTCAAAAAACGACCGGTGGCGGTAG
AAAGGGGTTTAATTCCCGACATGAATTATTGGTCGGTTGTGATGATGCTG
GCGGGTTTGCGCTGAGTTTATCCTCTCACACGTGATGCAAAGACAGAAGC
GTTCGGGGGTTCAGTGCTGCGTAAAATTTTATGCTCCTCTTGCATGAACG
ATGACTCGGCCCGGAGATCGCGCGAATAAATGAATCCGCTGCCGAGTAAT
CGCTGAGGCGAGTTCCTGTAATCATCGTCTGTTGTGTTTCTTCGTCCTCG
CGGCTATCATCACCCCGGCTGGATGGCAGATGCTTTTCGCCCTCATCGAC
TGCACGAAAGGCGATGTGTAGCCCAGCTTTCTTTTGTGGCCACCCCAGAT
CCACCTGACTATCGGGGTTCAGGTTGCTAACAGCTGCGCTGTGGCCCCTA
AATTTTCGCACTACAGTAGGAGGTATATGCGGCGCCGTGTCCGCGCTGAA
AAACATGAAGAGTACCGGTAAAATACCTTTTGACACCGAGGTGTGAGCCC
TTTATAGGCAGATATCAGATATCACCTCCCTCCACTTTTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig779:101393..107733+

>mRNA_P-littoralis_Contig779.26.1 ID=mRNA_P-littoralis_Contig779.26.1|Name=mRNA_P-littoralis_Contig779.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=801bp|location=Sequence derived from alignment at P-littoralis_Contig779:101393..107733+ (Pylaiella littoralis U1_48)
ATGGTGCGTGCATTCTGCGCCGTTGTCGGGGCGCTCTTGGCGGTGGGTCA
AGCCACCGCCTTTTTCGGATCGACCTCGGCCTTCATGACGGGGACCATGT
CGACCGGCCTCCGGTCGCCGGGAGCGACGGCGGCGCTCGGGCGGGAGGCG
AGGACGTACCGGCGATTGTCGACGGCCAAGTCCGGGGCGGCATCCACCGT
GATGATGCCCATCGGGGTCCCTAAGGTGGCGTACCGAGTACCAGGGGCGC
CCACGGCGGACTGGGTGGACATCTACAACCGCCTCTACCGCGAGCGCATT
ATTTTCTTGGGGCAGGAGATCGATGATGAGCTGGCCAACCAGATAATCGG
AGTGCTGTTGTACCTCGATTCCGAGGACAGCACGAAGCCCATCTACCTGT
ACGTGAACTGCCCCGGGGGCTCCGTCATCGCTGGGTTGGCCCTTTTCGAC
ACCATGCAGCACATCCGCTCGGAGGTGGTGACGATCAACGTCGGGCTGGC
CGCCTCGATGGCCTCCTTCATCCTCGCCGCAGGAGCGAAGGGGAAGCGTA
TGGCGCTGCCGCACTCGCGTGTGATGATTCACCAGCCTATGGGGGGGGCG
CAGGGCCAAGCGGAAGACATCAAGGTGGAGGCGACCCAGATCATGCGCAT
TCGCGACAACATCGTCCGCATGTACTCCATGATGACCGGGCAGACGCAGG
AGCAGATCACCATTGACCTGGACCGCGATAACTTCATGTCGGCGCAGGCC
GCTGCGGATTACGGCCTCGTGGACACCGTAATAAAGCTGTCCAAGAAATA
G
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