mRNA_P-littoralis_Contig779.10.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE) HSP 1 Score: 396 bits (1018), Expect = 1.840e-113 Identity = 441/1110 (39.73%), Postives = 522/1110 (47.03%), Query Frame = 2
Query: 596 LEGVCRLCKDTNCGCEICSATXXXXXXXXXXXXXXXXXXECVYAKKLRFLCEFCGENRCLVCLMRMKPCEMCGEDVNMEQLRAGMKPMKGFVEGWSKEASGLSLEERAMREDVTDRWTAFVLRAPTAGSXXXXXXXXXXXXAVAPRVAXXXXXXXXXXXXXXXXXXXXXXXAGLDARVLAARIAGSSVEQKAPXXXXXXXXQQGTPGEPKGEGVSREDQKSAGGT--------------AGADXXXXXXXXXXXXXXXADARIGGGRRTRTRRERRGSXXXXXXXXXXXXXXXXXXXXRGISGAGALARDVVPCRASFDEVLRFVKLASTMLSSGDVNQRQGVTVASIKKFFAGWVEPGA----------------------------ENSS------------------------------------SRAASERKRGEAVASGGTAAAVS----LEEQLAELKTDEERKDAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAREKARIAEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANTARAAERTREEQXXXXXXXXXXXXVXXXASAEASGAMQGDGG---------ALLADMSLEVRFKKAVERGNELAIRAIHDEADHTPGANMKKIKKKCQKWLNKRAGE-QQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQGPTVDGLFCPNHLAGQVIGIRGQTVNRLMRESRAKIVLKPYRDNSGQDVVITGTPAAVQTAKMLVEEFYRSKGIEPTQLQPPSPAVAALAXXXXXXPPA---RARLSDPILPTEAMIGLLGRSASGRMAGPGQGPGMPGVPPAMPAMAGGGRGGGVAVFGGVRGGGGVIPHIVQPAPPQMIGGEG------------GGEILELLRAARCLHHLERFERDQLDGEVLLEMERREFERMGVTEAEQQRILTALQQNGGGGP------------------------VANVGVGPRAPQAAEDSG----EESDGLDPDHPDTCKICMAKLVGILFLPCAHQCTCTGCGAGFVGKPCIICRTTITKAQKVLRV 3520
L+GVCRLCK ++CGCE+C A C+ +R CE C +RCLVCLMRM+PC+ CG+ V++ ++R M + G V W +S L +R +V RW AF L +P A A XXXXXXXXXXXX A + ++ +++ P P P GEG+ E A + A AD + GGG +R GS XXXXXXXXXXX D RA +V L + L+S V +KKFFAGWVEP EN S +RA E K+ VA G AA V LEEQ+AEL+ E+RK AAK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAE KX XXXXXXXXXXXXXXXXXXXXXXXX ++R V S +G GG +L+ DMSLEVR +KA+ERGN LA++AIHDEAD TPGA+MKK+KKKC+KWLNK+ GE ++ Q PT +FCPN +AGQVIG GQTVNRLM+ESRA+IVLKPY D +G DVVITG+P A TA+ LVE+FYRSKGIEPT L P XXXX P RARL DP++PTEAMIG LGR + +AGP A G+R G IP +P ++ G G GGE+ +LLRAARC HHLERF RDQLDGEVLLEMERR+F+RMGVTEAEQ RIL+AL+ G G V G P ED +SDGLDPDHPDTCKICM LVGILFLPCAHQCTC CG+GFVGKPCIICR +T+AQ V+R+
Sbjct: 41 LKGVCRLCKGSSCGCEVCDAAVCGSCREVCGRCGTVSCPRCLDMTVVRNFCEGCDADRCLVCLMRMRPCDTCGQTVSIGRVREAMDSVSGRVSRWMLASSELPEYRCPVRVEVYQRWVAF-LNSPVASP--------------AASATAATSTDAAGNMXXXXXXXXXXXXXXXXAEAXXGSVPPAAQQRRQPEKIP--------PTMPLGEGIGSESTDGAAXXXXXXXXXXXXXXXESSAARLAVGVEAEAAQLSPAD-KFGGGEAADASVDRDGSEESKGGERXXXXXXXXXXXG-----------DAPVDRAPVGDVQYMKSLKTANLAS----------VEGVKKFFAGWVEPDVVDLYHESTGDINTTIAQCHETVLQVLAQENKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGARAGKEEKQAGVVA--GAAAVVPTASRLEEQMAELQEAEKRKQAAKTGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKAXXXXXXXXXIAEAKXATEARCGAGVGAMAAAAELEASEAAKRKXXXXXXXXXXXXXXXXXXXXXXXXPP------GSKRQEHIVAPVPERGMSGERVASGLSEATAGPPAMTGGXXXXXXXXASLVVDMSLEVRLRKAIERGNALAVQAIHDEADQTPGADMKKMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQA--TARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAVAGPA-----------------------AAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXXVDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXXXXXXGRRENLAQRVVTVVRGTSGGVATPFEVEDDDVDEDXDSDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRL 1072
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI) HSP 1 Score: 330 bits (847), Expect = 4.280e-91 Identity = 207/424 (48.82%), Postives = 250/424 (58.96%), Query Frame = 2
Query: 2249 ALLADMSLEVRFKKAVERGNELAIRAIHDEADHTPGANMKKIKKKCQKWLNKRAGEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQGPTVDGLFCPNHLAGQVIGIRGQTVNRLMRESRAKIVLKPYRDNSGQDVVITGTPAAVQTAKMLVEEFYRSKGIEPTQLQPPSPAVAALAXXXXXXPPARARLSDPILPTEAMIGLLGRSASGRMAGPGQGPGMPGVPPAMPAMAGGGRGGGVAVFGGVRGGGGVIPHIVQPAPPQMIGGEGGGEILELLRAARCLHHLERFERDQLDGEVLLEMERREFERMGVTEAEQQRILTALQQNGGGGPVANVGVGPRAPQAAEDSGEESDGLDPDHPDTCKICMAKLVGILFLPCAHQCTCTGCGAGFVGKPCIICRTTITKAQKVLRV 3520
ALLADMSLEVR KKA++ GN LA+++I+DEAD TPGA+MKKIKKKCQ++LNK+AGE Q XXXXXXXXXXX Q PT +FCPN++A Q+IG +GQTVN+LM++SRAKIV+KPY D SG DV+ITGTP AV+TAK LVEEFYRSKG +P+ L PPS AVAA ARAR + P+ GG + G GGE+ +LLR A C HHLERF DQLDGEVLL M+RR+FERMGVTE EQ RIL AL+ +GG +SDGLDPDHPDTCKIC+ LV ILFLPCAHQCTC+ CG+ + GKPCI+CR + K Q+V+++
Sbjct: 678 ALLADMSLEVRLKKAIDSGNTLAVQSIYDEADQTPGASMKKIKKKCQRYLNKKAGEDQKLQQASQPAPVRGAXXXXXXXXXXXA-------------QRPTQHDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARKAEG-----ARARPAQPVT-----------------------------------------------------GGPXXXXXXXXXXVVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTEGEQIRILNALKGSGGXXXXXXX--------------XDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKL 1016
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI) HSP 1 Score: 326 bits (836), Expect = 1.840e-90 Identity = 385/991 (38.85%), Postives = 459/991 (46.32%), Query Frame = 2
Query: 734 LRFLCEFCGENRCLVCLMRMKPCEMCGEDVNMEQLRAGMKPMKGFVEGWSKEASGLSLEERAMREDVTDRWTAFVLRAPTAGSXXXXXXXXXXXXAVAPRVAXXXXXXXXXXXXXXXXXXXXXXXAGLDARVLAARIAGSSVEQKAPXXXXXXXXQQGTPGEPKGEGVSREDQKSA----------------GGTAGADXXXXXXXXXXXXXXXADARIGGGRRTRT------RRERRGSXXXXXXXXXXXXXXXXXXXXRGISGAGALARDVVPCRASFDEVLRFVKLASTMLSSGDVNQRQGVTVASIKKFFAGWVEPGAENSSSRAASERK-----RGEAVASGGTAAAV---SLEEQLAELKTDEERKDAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAREKARIAEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANTAR------------AAERTREEQXXXXXXXXXXXXVXXXASAEASG--AMQGDG-------GALLADMSLEVRFKKAVERGNELAIRAIHDEADHTPGANMKKIKKKCQKWLNKRAGEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQGPTVDGLFCPNHLAGQVIGIRGQTVNRLMRESRAKIVLKPYRDNSGQDVVITGTPAAVQTAKMLVEEFYRSKGIEPTQLQPPSPAVAALAXXXXXXP-----PARARLSDPILPTEAMIGLLGRSASGRMAGPGQGPGMPGVPPAMPAMAGGGRGGGVAVFGGVRGGGGVIPHIVQPAPPQ-----MIGGE-----------GGGEILELLRAARCLHHLERFERDQLDGEVLLEMERREFERMGVTEAEQQRILTALQQNGGGGP-----------------------VANVGVGPRAPQAAEDSGEE------SDGLDPDHPDTCKICMAKLVGI 3403
+R CE C +RCLVCLMRM+PC+ CG+ V++ ++R M + G V W +S L +R +V RW AF L +P A +P A A A ++ + +++ P + EP GEGV E A G + AD AD + GGG R E +G G GA + D RA F EV L + L+S V +K FF+GWVEPG +RA E + RG+ +A+G AAAV SLEEQ+AEL+ E+R+ XXXXXXXXXXXXXXXXXX DA ARE+A XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX A+R V S +G AM+G +L+ DMSLEVR KKA+ERGN LA++AIHDEAD TPGA+MKKIKKKC+KWLNK+ GE + Q PT +FCPN +AGQVIG GQTVNRLM+ESRA+IVLK Y D +G DVVITG+P AV T + LVE+FYRSKGIEPT LQPPS XXXXXX RARL DP++PTEAMIG LGR + AGP A G+R G IP +P M GG G E+ +LLRAARC HHLERF+RDQLDGEVLLEMERREF+RMGVTEAEQ RI++AL+ G G VA V G A E+ SDGLDPDHPDTCKICM LVG+
Sbjct: 4 VRKFCEGCDADRCLVCLMRMRPCDTCGQTVSIGRVREAMDSVAGRVSRWMLASSELPEYRCPVRVEVYQRWIAF-LNSPVA----------------SPASATAVASTDAAGSMATAAGVPSTKSAXXXXXXAAGSVSPAPQQRRQPEKTPPPARRVT---EPLGEGVGSESTDGAAXXXXXXXXXXXXXGEGRESSADRLAIGVEAEAAQLSPAD-KFGGGEAADAAVGCDGREESKGGERGA-----------------GSGGATGASGDAPIGRAPFGEVQYMESLKTANLAS----------VEGVKLFFSGWVEPGLGAGGARAGKEEENQAGPRGKGIAAGAAAAAVPTVSLEEQMAELQEAEKRQXXXXXXXXXXXXXXXXXXXXXXEMQ------------------------DAVAREEAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAMAAAAELAASEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKRQERIVAPVPERGTSGARVATGLSEATAGPPAMKGXXXXXXXXXASLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPMAA---QRPTEYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAGAGP-------------------------AAAVGMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGVELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTEAEQGRIMSALKHAGDGXXXXXXXXXXXXXXXXXXRENSAQRVAAVVRGASGVMATPVEVEDXXXXXXSDGLDPDHPDTCKICMDALVGL 894
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE) HSP 1 Score: 221 bits (564), Expect = 3.220e-60 Identity = 148/391 (37.85%), Postives = 183/391 (46.80%), Query Frame = 2
Query: 2537 IQGPTVDGLFCPNHLAGQVIGIRGQTVNRLMRESRAKIVLKPYRDNSGQDVVITGTPAAVQTAKMLV---------------------------------------------------------------EEFYRSKGIEPTQLQPPSPAVAALAXXXXXXPPARARLSDPILPTEAMIGLLGRSASGRMAGPGQGPGMPGVPPAMPAMAGGGRGGGVAVFGGVRGGGGVIPHIVQPAPPQMIGGEGGGEILELLRAARCLHHLERFERDQLDGEVLLEMERREFERMGVTEAEQQRILTALQQNGGGGPVANVGVGPRAPQAAEDSGEESDGLDPDHPDTCKICMAKLVGILFLPCAHQCTCTGCGAGFVGKPCIICRTTITKAQKVLRV 3520
+ P+ L ++A Q+IG +GQTV++LM+ESRAKIV+KPY D SG DVVITGTP AV+ +K V EEFYRSKG +PT L PPS AVAA ARAR + P+ +V+ G GGE+ +LLR A C HHLERF DQLDGEVLL M+RR+FERMGVT EQ RIL AL+ +G GG +DS E+SDGLDPDHPDTCKIC+ LV ILFLPCAH CTC+ CG+ + GKPCI+CR + K Q+V+++
Sbjct: 39 VLAPSPSPLLRAQNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEG----ARARPAQPVTGXXXXXXXXX----------------------------------------------XXXVVVED-------GAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTVGEQIRILNALKGSGAGG--------------VDDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIKL 358
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.050e-18 Identity = 52/159 (32.70%), Postives = 71/159 (44.65%), Query Frame = 2
Query: 440 ATQCADADCETTFCHKCKPTLPECSSCFSQHCEGTGNPETDCLLPCQGTAGCLEGVCRLCKDTNCGCEICSATXXXXXXXXXXXXXXXXXXECVYAKKLRFLCEFCGENRCLVCLMRMKPCEMCGEDVNMEQLRAGMKPMKGFVEGWSKEASGLSLEER 916
+T+C++ CET FC C+ +L ECS C HC G+P+TDCLLPCQG C EG C +RCL+C+MR +PC+MCG V+ +++R M GF+E WSK G + R
Sbjct: 130 STRCSNTSCETVFCSSCRLSLSECSGCLMPHCRRAGDPDTDCLLPCQGHPECREG--------------------------------------------------CNADRCLLCVMRSRPCDMCGHPVSADRVREHMASTTGFIEKWSKFCLGKNSRRR 238
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: A0A6H5JGL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL0_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 3.220e-17 Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 2
Query: 389 SASGACSMCGRNDGSMSATQCADADCETTFCHKCKPTLPECSSCFSQHCEGTGNPETDCLLPCQGTAGCLE 601
S S ACSMCG + CAD CET C+KC+ LPECSSC CEGTG+PETDCLLPCQG GC E
Sbjct: 31 STSEACSMCGSRKTYTPGSVCAD--CETYACYKCEGPLPECSSCLMSFCEGTGDPETDCLLPCQGQPGCSE 99
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Match: A0A183DW17_9BILA (KH domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DW17_9BILA) HSP 1 Score: 62.0 bits (149), Expect = 5.090e-6 Identity = 26/59 (44.07%), Postives = 44/59 (74.58%), Query Frame = 2
Query: 2570 PNHLAGQVIGIRGQTVNRLMRESRAKIVLKPYRDNSGQDVVITGTPAAVQTAKMLVEEF 2746
PN L G +IG G+ +NR+ ES A+I++ P++D+ + + ITGTPAA+QTA+ L++++
Sbjct: 320 PNELGGTIIGKGGERINRVREESGAQIIVGPHQDSGERIITITGTPAAIQTAQYLLQQW 378 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig779.10.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig779.10.3 >prot_P-littoralis_Contig779.10.3 ID=prot_P-littoralis_Contig779.10.3|Name=mRNA_P-littoralis_Contig779.10.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1093bp MDRHQVLMRPSPAFGGSGGSGGGGFGAPAENGNDDSSYSCGGHPRGPSASback to top mRNA from alignment at P-littoralis_Contig779:40605..63689+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig779.10.3 ID=mRNA_P-littoralis_Contig779.10.3|Name=mRNA_P-littoralis_Contig779.10.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=23085bp|location=Sequence derived from alignment at P-littoralis_Contig779:40605..63689+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig779:40605..63689+ >mRNA_P-littoralis_Contig779.10.3 ID=mRNA_P-littoralis_Contig779.10.3|Name=mRNA_P-littoralis_Contig779.10.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3279bp|location=Sequence derived from alignment at P-littoralis_Contig779:40605..63689+ (Pylaiella littoralis U1_48)back to top |