mRNA_P-littoralis_Contig778.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig778.13.1
Unique NamemRNA_P-littoralis_Contig778.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig778.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig778contigP-littoralis_Contig778:90253..92032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G975
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C,Polysacc_lyase,WSC
Model size274
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.05e-19
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.2.1.37
Descriptionprotein xylosyltransferase activity
Cds size270
COG categoryU
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791600.5714905-CDS-P-littoralis_Contig778:90252..903931680791600.5714905-CDS-P-littoralis_Contig778:90252..90393Pylaiella littoralis U1_48CDSP-littoralis_Contig778 90253..90393 +
1680791600.5832229-CDS-P-littoralis_Contig778:91901..920301680791600.5832229-CDS-P-littoralis_Contig778:91901..92030Pylaiella littoralis U1_48CDSP-littoralis_Contig778 91902..92030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig778.13.1prot_P-littoralis_Contig778.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig778 90253..92030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig778.13.1

>prot_P-littoralis_Contig778.13.1 ID=prot_P-littoralis_Contig778.13.1|Name=mRNA_P-littoralis_Contig778.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
ASDIETDFLLINWDAGRDNTGISWSSDGSMHGNACASKGIAVTGMDWKEG
TGPGLTFADPETNSVDHYTSRGPCIVDDEVRNKPTTCAAT
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mRNA from alignment at P-littoralis_Contig778:90253..92032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig778.13.1 ID=mRNA_P-littoralis_Contig778.13.1|Name=mRNA_P-littoralis_Contig778.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1780bp|location=Sequence derived from alignment at P-littoralis_Contig778:90253..92032+ (Pylaiella littoralis U1_48)
GCAAGTGATATCGAGACGGACTTTCTTCTGATCAATTGGGATGCGGGCCG
TGACAACACTGGAATCAGTTGGAGCTCCGATGGAAGCATGCACGGTAACG
CTTGTGCCTCCAAAGGCATCGCCGTCACCGGCATGGACTGGGTGAGTGAC
GTGGTACATAACCTACTTCGAATCAGGAGGAAGTACCTGATCATTGTACA
TGTACTGCCCGCGTGGTGAGTAAGGGTCGTTTTAATCATTGACTTTTTAT
GTCAGATTCTTCGACATGTCGAACATTTCGACACATCATGTATGAAGGCA
TTTGTCGATTTTTTTTCAAAAAGTGTGATCTGATCTGCCGCCCAAAATTG
TGAGTGACTTGGCTCACATGTTTTGACATTTTCTTTCACATTTTCTTCGA
CATCCCCAAGCGAGGTCGAGACGCTGCTGGCAGAGGGTCCAGCAGTGGTA
GCTCACCCGGGTCCAGCAGTGGTAGCTCACCCCAAAAGATAGGGTTAGGG
TTAGGGTAGACCCTTACCCTAAGACAGCCTAATGTGAAGTGGATAGGTCA
CACTCACTTTGTGAGATAGGTTCGTAGCCAGTCCCGCGTCTGAACTGCTG
TACTCGGTCCCCTCTGCACTGACGTACTTACTACAACATTTTGGCCAGAT
TCAGAGTCAGCTTTTAATTCGGAGTGAGGCACCCCAATTAATTGGTTTTC
CTGAAAATTTCTGCGACTGACTGGCGTGTCTGGGGGAGTCATGCGCCGAT
CCGGTCAATAAATGGCTCAAACGAAAGCCTATACCCGTAGGATGAATTCG
ATATTGACTACGGTTGAATCAACGCCGTCAATCATTCATAGTGACATTTT
CTTTGTTTCTCGAAAATGTTAATTAATGCCTGAAACAGTTTCAGGCCTGA
ATTGGTCACCCAGGCCTAAAAACGCTATTATGGTGTAACGTTCCATCTAG
ACCCCCGACAGCCCTGTAAACGGTATCGGCGTGTAGCTGGAGACATCCGG
CGTCCGTGCAAGCAAAACAAAAAAACGAAAAGTGAACAACGATTGAAATA
GAGAGCAAGCAAATAACTCACTCCGAATCAATTTTGACTCTGAATCTGGC
GAAAGCGGTGTTCTACGTGTACAGCATACAGAGCAGCTGTTTTTACTATT
TATCCCACCTGCTCTGTTTGCCTCAGAGAAAACACTTACGGCTATGCCAT
TGGTGCGGCGCTATCGAGAATAGTGTTATCCGATGATAGTGACAACACTA
AGGAGAACCATACTACTGCTACTCTGTGTCCAGACCTGTAATCCAGGAGT
ATTTTCTCCAACACAATGGCCTGGCCGGGCGAGCAATTACCAACCGATAC
CCAGCAGCACAGATATTTCTCAATTTGAAGAAAAAAATAGATTTTTTCAA
AAAGGGTTTCTGTAACTTGAAAAATATCACTTGACTTCGATGGGGAACCC
AAGAGAATATATTTTTTATCAATTGACCGATCCCTTCAAGCACAGTTGGT
TGTATGTCTGGATTCTCTGCCATAATTAAAGTTGGCTTGACATTCGAAAC
AGTCCCCTGGCCTTGAAAAATTCGTTGATTGTGACACGGTTGTAGTAGCG
CAACATCACCACAAACAACCGGAAATTATGCTGACTTGGATGCTGGCAGA
AGGAAGGAACTGGTCCTGGACTTACTTTCGCGGATCCCGAAACCAACTCT
GTGGATCATTACACCTCCCGAGGGCCGTGCATCGTCGACGACGAGGTCCG
CAACAAGCCGACCACTTGCGCCGCCACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig778:90253..92032+

>mRNA_P-littoralis_Contig778.13.1 ID=mRNA_P-littoralis_Contig778.13.1|Name=mRNA_P-littoralis_Contig778.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig778:90253..92032+ (Pylaiella littoralis U1_48)
GCAAGTGATATCGAGACGGACTTTCTTCTGATCAATTGGGATGCGGGCCG
TGACAACACTGGAATCAGTTGGAGCTCCGATGGAAGCATGCACGGTAACG
CTTGTGCCTCCAAAGGCATCGCCGTCACCGGCATGGACTGGAAGGAAGGA
ACTGGTCCTGGACTTACTTTCGCGGATCCCGAAACCAACTCTGTGGATCA
TTACACCTCCCGAGGGCCGTGCATCGTCGACGACGAGGTCCGCAACAAGC
CGACCACTTGCGCCGCCACC
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