mRNA_P-littoralis_Contig778.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig778.8.1
Unique NamemRNA_P-littoralis_Contig778.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig778.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig778contigP-littoralis_Contig778:36848..38929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size660
Hectar predicted targeting categoryother localisation
Exons2
Cds size660
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791600.4307826-CDS-P-littoralis_Contig778:36847..373571680791600.4307826-CDS-P-littoralis_Contig778:36847..37357Pylaiella littoralis U1_48CDSP-littoralis_Contig778 36848..37357 -
1680791600.4415283-CDS-P-littoralis_Contig778:38779..389291680791600.4415283-CDS-P-littoralis_Contig778:38779..38929Pylaiella littoralis U1_48CDSP-littoralis_Contig778 38780..38929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig778.8.1prot_P-littoralis_Contig778.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig778 36848..38929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig778.8.1

>prot_P-littoralis_Contig778.8.1 ID=prot_P-littoralis_Contig778.8.1|Name=mRNA_P-littoralis_Contig778.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp
EVFLQLLDNERATAGRADAARQGSASASRNETAVTPTAVVADEMDSMASG
CLSCAVVVTHAADDKENSAKQPVVEPSPSGEQHSTATVAELPLEEPKVQQ
QQMDPVEEVVVSPFGGEPTVGIKWHKAGQLSETLVLGKDCCVILEVSNCW
CAETVEDDSSSSSSNDSGGNRDDEWWNVTWGSAPTHPFRPRQEFLEQRGR
RREVLGVTHPFDRGKRFAPC
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mRNA from alignment at P-littoralis_Contig778:36848..38929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig778.8.1 ID=mRNA_P-littoralis_Contig778.8.1|Name=mRNA_P-littoralis_Contig778.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2082bp|location=Sequence derived from alignment at P-littoralis_Contig778:36848..38929- (Pylaiella littoralis U1_48)
GAAGTATTTCTGCAGCTGCTTGATAACGAAAGAGCAACGGCGGGGCGCGC
GGATGCGGCCAGACAGGGTTCGGCTTCGGCGAGTCGGAACGAGACAGCAG
TGACGCCCACAGCAGTAGTAGCAGACGAAATGGACTCCATGGCGAGCGGG
GTGTCTTGTCAGTTAGATGGACTTAACCACTAGAGCACATAGTCAGCGGA
CTTACCAACAAAAGATACGCCGGGGGTTCGATCCTCGCCAGGTGTAGCGC
CTTTTTTGAGAAATAAAGCTTGGGGCTTTGTCCGTGTATTCGGATGTGTG
TGTGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCACCCTGCG
GTTCAAACTACAGGCTAGGCCCATCGACAGGGTCACACAGGAGGAAGGTC
AACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAAAT
GTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCG
AATCTGCTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCTAAGGAACAC
ATTCACCGGGAGTCGAACCCCATTCCTCTGCATCTAGTGGGTAACGAGGG
GACCACTAGTCCACCGGGGCGACCGGGGTTTTTTATGTAAGAGTGCGCGA
GTTAGATGGCGGGCAGGGTGTCCCACACCCACTAGAGTAGGCTCGGAGGT
CGCACTGGCGAGGGGGTGAGCCCCTGGAGATCACTGCCTGGCGAGGAAAA
CGGGAGTCGGACTCCCAATGCATATCTTTTGTCAGCTAGATGGACTTAAC
CACTGAAGTACTTTGTCGGCGCTGACTAAGTGCTCTATTAGTTAAGTACA
TCTCACCAACAAAAGATACGCCGGGGGTTCGATCCTCGCCAGGTGTAGCG
CCTTTTCACGAGAAATAAAGCTCCGGGCTTTGTCCGTGTATTCGGATCCA
AATGTGTGCGAGTTAGATGGCGGGCAGGGTGTCCCACACCCACTAGACTC
GGAGGTCGCGCTGGCGAGGGGGTGAACCCCCGGAGATCACTGCCTGGCGA
GGCAAACGGGAGTCGGACTCCCAATGCATATCTTTTGTCAGTTAGATGGA
CTTAACCACTAGAGAGCTGAGTCGGCGCTGACTAAGTGCTCTAGTAGTTG
AGTCCATCTTACCAACGAAAGATACGCCGGGGGTTCGATCATCGCCAGGT
GTAGCGCCTTTTTACGAGAAATAAAGCTTGAGCCTTTGTCCCTGTATTCG
GTTCTAAAAGTGCGCGAGTTAGATGGCGGGCAGGGTGTCCCACACCCACT
AGAGTAGGCTCGGAGATCGCGCTGGCGAGGGGGTGAGCCCCCGGAGATCA
CTGCCTGCACCCACTAGAGTAGGCTCGGAGGTCGCGCTGGCGAGGGGATG
AGCCCCCGGAGATCACTGCCTGGCGAGGAAAACGGTAGTCGGACTCCCAA
TGCATATCTTTTGTCGGTTAGATGGACTTAACCACTAAGAGCACTCAGTC
AGCCGCTGACTGAGTGCTCTAGTGGTGGCTGACTGAGTGCTCTATCTGGT
GGCTAAGTCCATCTAACCAACATGTCTTTCGTGTGCGGTGGTTGTGACGC
ACGCGGCCGACGACAAGGAAAACTCGGCCAAGCAGCCGGTGGTGGAGCCA
TCACCATCGGGGGAGCAGCATTCGACGGCGACAGTGGCGGAATTACCGTT
GGAAGAGCCGAAAGTTCAGCAGCAGCAGATGGATCCGGTGGAGGAAGTGG
TGGTATCGCCTTTTGGGGGCGAGCCAACTGTGGGCATCAAGTGGCATAAG
GCAGGGCAGCTGAGCGAGACGTTGGTCTTGGGGAAGGACTGCTGTGTTAT
TTTGGAGGTCAGCAACTGCTGGTGTGCGGAGACAGTTGAAGATGACAGCA
GTAGTAGCAGCAGCAACGACAGCGGTGGAAACAGGGACGACGAGTGGTGG
AACGTCACCTGGGGGAGTGCACCAACGCACCCTTTTCGACCCCGGCAAGA
GTTCCTCGAGCAACGCGGAAGAAGAAGGGAGGTCCTCGGGGTGACGCACC
CGTTCGATCGCGGCAAAAGGTTTGCGCCGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig778:36848..38929-

>mRNA_P-littoralis_Contig778.8.1 ID=mRNA_P-littoralis_Contig778.8.1|Name=mRNA_P-littoralis_Contig778.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig778:36848..38929- (Pylaiella littoralis U1_48)
GAAGTATTTCTGCAGCTGCTTGATAACGAAAGAGCAACGGCGGGGCGCGC
GGATGCGGCCAGACAGGGTTCGGCTTCGGCGAGTCGGAACGAGACAGCAG
TGACGCCCACAGCAGTAGTAGCAGACGAAATGGACTCCATGGCGAGCGGG
TGTCTTTCGTGTGCGGTGGTTGTGACGCACGCGGCCGACGACAAGGAAAA
CTCGGCCAAGCAGCCGGTGGTGGAGCCATCACCATCGGGGGAGCAGCATT
CGACGGCGACAGTGGCGGAATTACCGTTGGAAGAGCCGAAAGTTCAGCAG
CAGCAGATGGATCCGGTGGAGGAAGTGGTGGTATCGCCTTTTGGGGGCGA
GCCAACTGTGGGCATCAAGTGGCATAAGGCAGGGCAGCTGAGCGAGACGT
TGGTCTTGGGGAAGGACTGCTGTGTTATTTTGGAGGTCAGCAACTGCTGG
TGTGCGGAGACAGTTGAAGATGACAGCAGTAGTAGCAGCAGCAACGACAG
CGGTGGAAACAGGGACGACGAGTGGTGGAACGTCACCTGGGGGAGTGCAC
CAACGCACCCTTTTCGACCCCGGCAAGAGTTCCTCGAGCAACGCGGAAGA
AGAAGGGAGGTCCTCGGGGTGACGCACCCGTTCGATCGCGGCAAAAGGTT
TGCGCCGTGT
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