mRNA_P-littoralis_Contig777.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig777.3.1
Unique NamemRNA_P-littoralis_Contig777.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig777.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig777contigP-littoralis_Contig777:12186..12588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size404
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.6886618-UTR-P-littoralis_Contig777:12185..121861680791599.6886618-UTR-P-littoralis_Contig777:12185..12186Pylaiella littoralis U1_48UTRP-littoralis_Contig777 12186..12186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.7056417-CDS-P-littoralis_Contig777:12186..125881680791599.7056417-CDS-P-littoralis_Contig777:12186..12588Pylaiella littoralis U1_48CDSP-littoralis_Contig777 12187..12588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig777.3.1prot_P-littoralis_Contig777.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig777 12187..12588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig777.3.1

>prot_P-littoralis_Contig777.3.1 ID=prot_P-littoralis_Contig777.3.1|Name=mRNA_P-littoralis_Contig777.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MREPPPGSSRIVIAGGATLRVVACGDLDLIMHARTDFLERMTSVLLVEDL
SFNLFSLHWGQRNGRIVLYEQGTHLFDGQLTFPYNETGSYLHATRVPHQP
SAFAAATALQAAPGFPSSGNSDFSESGVQSTASG
back to top

mRNA from alignment at P-littoralis_Contig777:12186..12588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig777.3.1 ID=mRNA_P-littoralis_Contig777.3.1|Name=mRNA_P-littoralis_Contig777.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=403bp|location=Sequence derived from alignment at P-littoralis_Contig777:12186..12588+ (Pylaiella littoralis U1_48)
CATGCGTGAACCCCCCCCTGGTAGCAGTAGGATAGTGATTGCGGGAGGTG
CGACTTTGCGTGTGGTTGCCTGCGGTGATTTGGATTTGATCATGCATGCA
CGCACCGATTTTTTGGAACGGATGACAAGCGTCTTGCTTGTGGAGGATCT
CTCCTTCAATCTTTTTTCTTTGCACTGGGGACAAAGGAACGGTAGGATTG
TGCTATATGAGCAAGGGACACATTTATTCGACGGTCAACTCACGTTTCCG
TACAATGAGACGGGATCTTATTTGCACGCGACTCGCGTGCCTCACCAACC
CTCTGCTTTTGCCGCTGCTACCGCTCTGCAAGCCGCCCCTGGTTTTCCCT
CTTCAGGCAACTCTGATTTTTCTGAGTCAGGTGTCCAGTCCACCGCTTCG
GGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig777:12186..12588+

>mRNA_P-littoralis_Contig777.3.1 ID=mRNA_P-littoralis_Contig777.3.1|Name=mRNA_P-littoralis_Contig777.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig777:12186..12588+ (Pylaiella littoralis U1_48)
ATGCGTGAACCCCCCCCTGGTAGCAGTAGGATAGTGATTGCGGGAGGTGC
GACTTTGCGTGTGGTTGCCTGCGGTGATTTGGATTTGATCATGCATGCAC
GCACCGATTTTTTGGAACGGATGACAAGCGTCTTGCTTGTGGAGGATCTC
TCCTTCAATCTTTTTTCTTTGCACTGGGGACAAAGGAACGGTAGGATTGT
GCTATATGAGCAAGGGACACATTTATTCGACGGTCAACTCACGTTTCCGT
ACAATGAGACGGGATCTTATTTGCACGCGACTCGCGTGCCTCACCAACCC
TCTGCTTTTGCCGCTGCTACCGCTCTGCAAGCCGCCCCTGGTTTTCCCTC
TTCAGGCAACTCTGATTTTTCTGAGTCAGGTGTCCAGTCCACCGCTTCGG
GT
back to top