mRNA_P-littoralis_Contig776.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.50.1
Unique NamemRNA_P-littoralis_Contig776.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig776.50.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.060e-53
Identity = 109/259 (42.08%), Postives = 150/259 (57.92%), Query Frame = 1 
Query:    1 ENALFYGRKFEGFVANPDKVDEVAGRVENAFDQAWRMGKFNRNRSSDSVSVVCHGTLPAGIPADTTPQRINSQIRSIMDETGETGR----TPTEAVLLTACKNIASTLGWEIKEN-TQGLPSLHAAGGKSYDKKTCDIPLWGKPIIFDTRQDALNSLNPGSNEMDLQYVRLVLVADYQLLQRMCLPGGKEAVRSKEAGLYIKVAADCPAYRAIWELPSHNRTTSHEVASYLERNAARQALLDTFNDAAGGKAAPACLLL 762
            E AL  GRK E F+   +    V  RVE A++ AWR G F  +  +  ++ + HG+LP GIP  TTP RI + + +  +   E GR    TP E  LL A + IA  +GW IK N    LP L A    SY     DIP+WGK +++D+ + AL+SLN G++  DLQ+VRLV VAD +LL++MC     + V+  EAGLY++VA  CPAY A  E      +T HE++SYL+R   R+ L+  FND   G  AP  L++
Sbjct:  840 EGALNLGRKVEAFLVASEHHGAVTTRVEEAWEGAWRKGLFTDDGDASEITYISHGSLPDGIPEITTPHRILADVNTRTNNLREGGRVDGTTPDERALLGAAQAIAEQMGWAIKVNPVDDLPYLCARNKTSYRTAHNDIPVWGKTVVYDSHRQALDSLNVGNHSTDLQFVRLVRVADNELLKKMCPKN--QVVKHSEAGLYLRVAESCPAYYACCEQGKDKSSTHHEISSYLQRTDNRETLIGAFNDGVPGYPAPVRLVV 1096
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BLAST of mRNA_P-littoralis_Contig776.50.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.860e-50
Identity = 105/259 (40.54%), Postives = 145/259 (55.98%), Query Frame = 1 
Query:    1 ENALFYGRKFEGFVANPDKVDEVAGRVENAFDQAWRMGKFNRNRSSDSVSVVCHGTLPAGIPADTTPQRI----NSQIRSIMDETGETGRTPTEAVLLTACKNIASTLGWEIKENTQG-LPSLHAAGGKSYDKKTCDIPLWGKPIIFDTRQDALNSLNPGSNEMDLQYVRLVLVADYQLLQRMCLPGGKEAVRSKEAGLYIKVAADCPAYRAIWELPSHNRTTSHEVASYLERNAARQALLDTFNDAAGGKAAPACLLL 762
            E AL  GRK E F+   +    V  RVE A++ AWR G F  + S+  ++ + HG+LP GIP  TTP RI    N++  ++ +     G TP E  LL A + IA  +GW IK N+   LP L A    SY     DIP+ G P+++D+   AL+SLN   +  DLQ+VRLV VAD  LL++MC     + V+  EA LY++VA  CPAY A  E      +  HE++SYL+R   R+ L+  FND   G  AP  L++
Sbjct:  339 ECALNLGRKVEAFLVASEHHGAVTTRVEEAWEGAWRKGLFTDDGSASEITYISHGSLPDGIPETTTPNRILADVNTRTNNLREGGSVDGATPDERALLGAAQAIAEQMGWVIKVNSDDDLPYLCARNKTSYQTTHNDIPVSGNPVVYDSHGQALDSLNIEDHSTDLQFVRLVRVADNGLLKKMCPKN--QIVKHSEAALYLRVAESCPAYYACCEQGKDKSSAHHEISSYLQRTDNRETLIGAFNDGVPGYHAPVRLVV 595
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BLAST of mRNA_P-littoralis_Contig776.50.1 vs. uniprot
Match: A0A6H5K1L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.060e-21
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 1 
Query:  286 ACKNIASTLGWEIKENTQGLPSLHAAGGKSYDKKTCDIPLWGKPIIFDTRQDALNSLNPGSNEMDLQYVRLVLVADYQLLQRMCLPGGKEAVRSKEAGLYIKVAADCPAYRAIWELPSHNRTTSHEVASYLERNAARQALLDTF 717
            ACK +A    WE  E      +L A   + Y+    D+P+WG+ I+ D+ ++A  S+ P  +  +LQYVRL+ VAD QLL+RMC    +E+V S++AGLY++VA  CPA+ A+W+    N  T HEV +   R  +   L+  F
Sbjct:    5 ACK-VARDFQWEPPEELGVSVTLFALDAQRYNVGASDLPVWGEYIVSDSLEEAYASIKPDDDAENLQYVRLLHVADTQLLRRMCKEA-EESVVSEDAGLYLRVAKSCPAFYALWDESEDNAGT-HEVRNRCARTDSTSNLVAKF 145
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BLAST of mRNA_P-littoralis_Contig776.50.1 vs. uniprot
Match: A0A6H5K2Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.260e-19
Identity = 49/123 (39.84%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:  349 SLHAAGGKSYDKKTCDIPLWGKPIIFDTRQDALNSLNPGSNEMDLQYVRLVLVADYQLLQRMCLPGGKEAVRSKEAGLYIKVAADCPAYRAIWELPSHNRTTSHEVASYLERNAARQALLDTF 717
            +L A   + Y     D+P+WG+ I++D+R++A  S+ P  ++ +LQYVRL+ VAD QLL+RMC    +E+V S +AGLY++VA  CPA+ A+W+  S +   +HEV +   R  +   L+  F
Sbjct:  429 ALFALDAQRYKVGASDLPVWGEYIVYDSREEAYASIQPDDDDQNLQYVRLLHVADTQLLRRMCKEA-EESVVSDDAGLYLRVAKSCPAFYALWD-ESEDNVGTHEVRNRCARTDSTSNLVAKF 549
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JK41_9PHAE1.060e-5342.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI9.860e-5040.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1L5_9PHAE1.060e-2138.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2Z9_9PHAE2.260e-1939.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:126827..128790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size772
Hectar predicted targeting categoryother localisation
Exons3
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.5255444-CDS-P-littoralis_Contig776:126826..1272701680791599.5255444-CDS-P-littoralis_Contig776:126826..127270Pylaiella littoralis U1_48CDSP-littoralis_Contig776 126827..127270 -
1680791599.542102-CDS-P-littoralis_Contig776:127874..1280781680791599.542102-CDS-P-littoralis_Contig776:127874..128078Pylaiella littoralis U1_48CDSP-littoralis_Contig776 127875..128078 -
1680791599.5537038-CDS-P-littoralis_Contig776:128667..1287901680791599.5537038-CDS-P-littoralis_Contig776:128667..128790Pylaiella littoralis U1_48CDSP-littoralis_Contig776 128668..128790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.50.1prot_P-littoralis_Contig776.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 126827..128790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.50.1

>prot_P-littoralis_Contig776.50.1 ID=prot_P-littoralis_Contig776.50.1|Name=mRNA_P-littoralis_Contig776.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=257bp
ENALFYGRKFEGFVANPDKVDEVAGRVENAFDQAWRMGKFNRNRSSDSVS
VVCHGTLPAGIPADTTPQRINSQIRSIMDETGETGRTPTEAVLLTACKNI
ASTLGWEIKENTQGLPSLHAAGGKSYDKKTCDIPLWGKPIIFDTRQDALN
SLNPGSNEMDLQYVRLVLVADYQLLQRMCLPGGKEAVRSKEAGLYIKVAA
DCPAYRAIWELPSHNRTTSHEVASYLERNAARQALLDTFNDAAGGKAAPA
CLLLREG
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mRNA from alignment at P-littoralis_Contig776:126827..128790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.50.1 ID=mRNA_P-littoralis_Contig776.50.1|Name=mRNA_P-littoralis_Contig776.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1964bp|location=Sequence derived from alignment at P-littoralis_Contig776:126827..128790- (Pylaiella littoralis U1_48)
GAGAATGCCCTGTTCTACGGCCGAAAGTTTGAGGGCTTCGTCGCCAACCC
TGACAAAGTCGATGAGGTCGCAGGGCGTGTGGAGAACGCCTTCGACCAGG
CCTGGAGGATGGGGAAATTTAACGTAAGATAACGCCACTCAGATACAGCA
CCGAAATTTCCTCGGGGTTTATGTGCGCTTAGAGCCTAATATTTCTGCCA
TTATTATCGCTGTCTCCAATACACAAGGTTTTGGCTTCGCGTGTCTCCGT
TTTGTGTTTACCTGTTGTATTGTGCTTATGAGACCCTGATGGGTATCGTG
CGTGCCCGACGCGTTCATGTGGCCCATTCTTTGTGGTGAATTATTCTTTA
TTTTTCGGACCTCCGCTACCTTCTCCCACTGACGTGACGTATTTTGCGCC
GTGTTTTGTTTCACATACGTATGCCCCCGCTGCCTTGTGAACGCGGGTGT
TATTTGTTATTGACCGCGTATTTCCTAAGGTCAAACAACGTCTTCGACAA
AAACTTTTACCTTCAGTCAAACACTGCCGCCACATTGTCTAAGACTTGCA
ACCCGACGAAGGGCCGGCGGAGGGTATCGGGGGGGGGGGCGCGGTGGGAG
GCCGGGGGCGGAATATTTTCTCTGTTCAAATCGTACAGGAGTGATGGTAC
GACGGATGCATGTAAACTGGCTCATGAACTTATTCTACCGCCGGCTTTCC
GTACCTTCACAGCGCAACCGGTCCAGTGACTCCGTATCTGTCGTCTGCCA
CGGTACGCTGCCGGCGGGCATCCCGGCCGACACGACTCCACAACGGATTA
ATAGCCAAATTCGCTCCATCATGGATGAGACTGGCGAGACCGGGAGAACT
CCTACTGAGGCAGTACTCCTTACAGCTTGCAAGAACATTGCCTCTACCCT
CGGGTGGGAGATCAAGGTGTGAATATATAAACGCGCGTAAAAAAGGGCAA
GCCACCAATTGTACGTTTCAGCTTTGCTGTGTTGCCTGCTGTAAGCGTAC
GGTGAGCGTACGGAAACACCTCCTTATTTGGTCCGTTACGGGTTTCGATC
GCACCCGTAAACGATGATATTGGTCCACTCCCTACCTTCTCCGTTCGCTG
CCCCAAGTTAACGTATTCTTATTTCCGTCAATCCCACTAAATTTATTTAT
TTGTCAACCTGCTCAAATTCGGAGATTTGTTTGTCTTTAACCCTTAATCC
TCCCTCTTCGAATAAGTGTGCCACCATCCTCACAAACAAGCCCTCCCGAG
TCATGTAATGCTCCTATTAATGTACGACGTTCTGCGGCTTATTAGCAAAC
GATACTGCTTTTTCGCACCCCAAATGCGTTACTCCGGTACGCATCACGGA
GATTTTGTCCCAAAACAGGATTGTGTCCCAAAACAGGTTTGTGGCATCCT
CCAGCTCCAACCCTCCGCGGGCTGGCTTTAGTCCATCAGTGTTCCTACGA
CGGGGAACTCATCTTGCCTCTCCTTTCTGTTGTTGTTGGATTGTTTGCTG
TTGCCACCACCAAATCACAGGAGAACACCCAAGGTCTTCCGTCCCTTCAC
GCGGCTGGGGGCAAGTCGTACGACAAAAAAACGTGCGACATCCCTCTCTG
GGGCAAGCCTATCATCTTCGACACCCGCCAAGACGCGCTCAATTCCCTCA
ACCCCGGCTCCAACGAAATGGATCTGCAGTACGTGCGGCTCGTTCTCGTG
GCGGACTACCAACTTCTTCAGCGCATGTGCCTCCCTGGCGGCAAGGAAGC
AGTGCGGTCGAAGGAGGCGGGGCTTTACATAAAGGTGGCTGCAGACTGCC
CGGCGTACCGCGCCATATGGGAGCTTCCTTCTCACAACCGCACGACGTCG
CATGAAGTCGCAAGCTACCTCGAGAGGAATGCGGCACGCCAGGCATTGCT
CGACACTTTCAACGACGCTGCCGGGGGAAAGGCGGCTCCCGCCTGCCTCC
TTCTTCGCGAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:126827..128790-

>mRNA_P-littoralis_Contig776.50.1 ID=mRNA_P-littoralis_Contig776.50.1|Name=mRNA_P-littoralis_Contig776.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig776:126827..128790- (Pylaiella littoralis U1_48)
GAGAATGCCCTGTTCTACGGCCGAAAGTTTGAGGGCTTCGTCGCCAACCC
TGACAAAGTCGATGAGGTCGCAGGGCGTGTGGAGAACGCCTTCGACCAGG
CCTGGAGGATGGGGAAATTTAACCGCAACCGGTCCAGTGACTCCGTATCT
GTCGTCTGCCACGGTACGCTGCCGGCGGGCATCCCGGCCGACACGACTCC
ACAACGGATTAATAGCCAAATTCGCTCCATCATGGATGAGACTGGCGAGA
CCGGGAGAACTCCTACTGAGGCAGTACTCCTTACAGCTTGCAAGAACATT
GCCTCTACCCTCGGGTGGGAGATCAAGGAGAACACCCAAGGTCTTCCGTC
CCTTCACGCGGCTGGGGGCAAGTCGTACGACAAAAAAACGTGCGACATCC
CTCTCTGGGGCAAGCCTATCATCTTCGACACCCGCCAAGACGCGCTCAAT
TCCCTCAACCCCGGCTCCAACGAAATGGATCTGCAGTACGTGCGGCTCGT
TCTCGTGGCGGACTACCAACTTCTTCAGCGCATGTGCCTCCCTGGCGGCA
AGGAAGCAGTGCGGTCGAAGGAGGCGGGGCTTTACATAAAGGTGGCTGCA
GACTGCCCGGCGTACCGCGCCATATGGGAGCTTCCTTCTCACAACCGCAC
GACGTCGCATGAAGTCGCAAGCTACCTCGAGAGGAATGCGGCACGCCAGG
CATTGCTCGACACTTTCAACGACGCTGCCGGGGGAAAGGCGGCTCCCGCC
TGCCTCCTTCTTCGCGAGGGT
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