mRNA_P-littoralis_Contig776.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.37.1
Unique NamemRNA_P-littoralis_Contig776.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig776.37.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.740e-22
Identity = 66/163 (40.49%), Postives = 97/163 (59.51%), Query Frame = 3 
Query:   21 LFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVS--CRQPARKGVSKQVGSDNMFSLQELSELFASKQSLAAFTAGRVAPMVRDTKVAAVAPLGYIHSVVPEPALELSHPRVAAFQNQVASTPG 503
            L+ R+ +VL+PNPF+RNGVS++L +     + S+  LR+E HDP G AM  RGV  +KLF++F GVLSA++ S     P RK + K  G D +F++ E   LFA+  + A      + P V     +A+AP     + VP P +    P+VAA+QN+ A+ PG
Sbjct:  201 LYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPPRKHL-KVAGPDRLFTMAEARSLFANSGTGAP---SALPPPVLTQPFSALAP-----APVPAPPVA---PQVAAYQNRTATAPG 351
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BLAST of mRNA_P-littoralis_Contig776.37.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.910e-15
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:   21 LFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVSCRQPARKGVSKQVG 281
            L+ R+ +VL+PNPF+RNGVS++L +     + S+  LR+E HDP G AM  RGV  +KLF++F GVLSA++ S   P  +     +G
Sbjct:  190 LYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPRDADASLG 276
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BLAST of mRNA_P-littoralis_Contig776.37.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-10
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 3 
Query:   21 LFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVS 239
            L+ R+ +VL+P PF+RNGVS+ L       + S+  LR+E HD    AM  RGV  +K F++F GVLSA++ S
Sbjct:  373 LYDRVVEVLLPTPFDRNGVSAKLHGIAYETTSSLGPLRMEWHDLLEEAMARRGVTAEKFFRKFVGVLSARNAS 445
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J849_9PHAE1.740e-2240.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH2_9PHAE1.910e-1544.83RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KZY5_9PHAE3.100e-1045.21Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:73247..73749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.438663-CDS-P-littoralis_Contig776:73246..737381680791599.438663-CDS-P-littoralis_Contig776:73246..73738Pylaiella littoralis U1_48CDSP-littoralis_Contig776 73247..73738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.4521306-UTR-P-littoralis_Contig776:73738..737491680791599.4521306-UTR-P-littoralis_Contig776:73738..73749Pylaiella littoralis U1_48UTRP-littoralis_Contig776 73739..73749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.37.1prot_P-littoralis_Contig776.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 73247..73738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.37.1

>prot_P-littoralis_Contig776.37.1 ID=prot_P-littoralis_Contig776.37.1|Name=mRNA_P-littoralis_Contig776.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
MRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGV
AMVSRGVETQKLFKEFAGVLSAQSVSCRQPARKGVSKQVGSDNMFSLQEL
SELFASKQSLAAFTAGRVAPMVRDTKVAAVAPLGYIHSVVPEPALELSHP
RVAAFQNQVASTPG
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mRNA from alignment at P-littoralis_Contig776:73247..73749-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.37.1 ID=mRNA_P-littoralis_Contig776.37.1|Name=mRNA_P-littoralis_Contig776.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=503bp|location=Sequence derived from alignment at P-littoralis_Contig776:73247..73749- (Pylaiella littoralis U1_48)
CCGAGGCGGACATGCGCCACCTGTTCTCTCGTCTCACGGACGTGCTGATG
CCCAACCCTTTCGAACGCAACGGTGTGTCTAGCCTGCTACTGCAACACAC
TCAGCGTGTCTCTGAATCCATGCGTAAACTGCGTCTCGAATTGCACGATC
CAACGGGTGTAGCGATGGTGAGCAGGGGGGTAGAAACGCAAAAGCTCTTC
AAAGAGTTCGCGGGTGTCTTGTCTGCACAGAGTGTATCTTGCAGGCAGCC
CGCTCGGAAAGGCGTTAGCAAGCAGGTTGGTTCGGACAACATGTTCTCTC
TGCAGGAGCTTTCCGAGTTGTTTGCGTCGAAGCAGTCGTTAGCAGCGTTC
ACAGCTGGCCGCGTAGCACCCATGGTTAGAGACACCAAGGTCGCTGCCGT
GGCGCCTCTCGGCTACATTCACTCGGTTGTGCCCGAGCCTGCCCTCGAGC
TTTCCCACCCCCGTGTAGCCGCCTTTCAGAACCAGGTCGCCTCCACCCCG
GGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:73247..73749-

>mRNA_P-littoralis_Contig776.37.1 ID=mRNA_P-littoralis_Contig776.37.1|Name=mRNA_P-littoralis_Contig776.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig776:73247..73749- (Pylaiella littoralis U1_48)
ATGCGCCACCTGTTCTCTCGTCTCACGGACGTGCTGATGCCCAACCCTTT
CGAACGCAACGGTGTGTCTAGCCTGCTACTGCAACACACTCAGCGTGTCT
CTGAATCCATGCGTAAACTGCGTCTCGAATTGCACGATCCAACGGGTGTA
GCGATGGTGAGCAGGGGGGTAGAAACGCAAAAGCTCTTCAAAGAGTTCGC
GGGTGTCTTGTCTGCACAGAGTGTATCTTGCAGGCAGCCCGCTCGGAAAG
GCGTTAGCAAGCAGGTTGGTTCGGACAACATGTTCTCTCTGCAGGAGCTT
TCCGAGTTGTTTGCGTCGAAGCAGTCGTTAGCAGCGTTCACAGCTGGCCG
CGTAGCACCCATGGTTAGAGACACCAAGGTCGCTGCCGTGGCGCCTCTCG
GCTACATTCACTCGGTTGTGCCCGAGCCTGCCCTCGAGCTTTCCCACCCC
CGTGTAGCCGCCTTTCAGAACCAGGTCGCCTCCACCCCGGGA
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