mRNA_P-littoralis_Contig776.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.27.1
Unique NamemRNA_P-littoralis_Contig776.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig776.27.1 vs. uniprot
Match: A0A6H5KNQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.980e-6
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   82 PTWKFNRGTLTSTPSIATLNAFYTAGHEGNLVGAATSKDHPRKIVFAKAVGQAV 243
            P WKF RGTL  TPS+A LN  Y AGH+         KD+ R+++ A+  GQ V
Sbjct:   49 PGWKFVRGTLVGTPSVAVLNTIYNAGHD-------EEKDYMRRVIQAECEGQIV 95
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BLAST of mRNA_P-littoralis_Contig776.27.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 6.250e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   82 PTWKFNRGTLTSTPSIATLNAFYTAGHEGNLVGAATSKDHPRKIVFAKAVGQ 237
            P WKF+RGTL STPSIA LN  Y AGH+ +       K+H ++ + ++  GQ
Sbjct:   39 PGWKFSRGTLISTPSIAVLNTIYKAGHDDD-------KEHMQREIHSQYGGQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNQ6_9PHAE5.980e-646.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE6.250e-546.15Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:46818..47948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.3877-CDS-P-littoralis_Contig776:46817..469071680791599.3877-CDS-P-littoralis_Contig776:46817..46907Pylaiella littoralis U1_48CDSP-littoralis_Contig776 46818..46907 -
1680791599.3977582-CDS-P-littoralis_Contig776:47780..479481680791599.3977582-CDS-P-littoralis_Contig776:47780..47948Pylaiella littoralis U1_48CDSP-littoralis_Contig776 47781..47948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.27.1prot_P-littoralis_Contig776.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 46818..47948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.27.1

>prot_P-littoralis_Contig776.27.1 ID=prot_P-littoralis_Contig776.27.1|Name=mRNA_P-littoralis_Contig776.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
AVEREQQAIEKERQKAIKKKDEPYPRRPTWKFNRGTLTSTPSIATLNAFY
TAGHEGNLVGAATSKDHPRKIVFAKAVGQAVRAKYE
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mRNA from alignment at P-littoralis_Contig776:46818..47948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.27.1 ID=mRNA_P-littoralis_Contig776.27.1|Name=mRNA_P-littoralis_Contig776.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-littoralis_Contig776:46818..47948- (Pylaiella littoralis U1_48)
GCCGTTGAGCGGGAGCAACAAGCCATCGAGAAGGAGCGGCAGAAAGCCAT
CAAGAAGAAGGACGAGCCCTATCCTCGGCGGCCTACGTGGAAGTTCAACC
GTGGCACTCTCACGTCGACCCCGTCCATCGCCACGTTGAACGCCTTTTAC
ACGGCTGGGCACGAGGGGGTGAGCAACAGCCGCACTTTGAAAGTCTGCCT
GCCAAACCCACGGCGGTTTTTTTCTTTTTGCCGTCGGCATTGCTCACCTG
TTTATCGTAATTACAGACTAGAATCGATGTCGGCGAACTGAAGAACATGG
GTGGCCTTTCTTTGTGCATATATTTTGTTGTGCTTCCACTGGAAAAAGGC
AACATGCTTCGCGAGCTCCTTTCGCAGTGTTCTGGGGAGTTTCTCAACAT
GGATGGAACGTTTCGTGTAGCTGGGAGGGTTATGGATGCGGCTGAGTGCA
TTTTTTTCGTTTTGGGGGAGGACGCCAAAGTCCACGGCTACGCGGCCATC
ATGTCAGAGAGCAAGGAGCAACTGCTTCCCTTCCTCGCCAGGTGTTTTTC
GTTGCATAACTTGGTGCGTTGGTTGTTGAGCTTGCGCGGTATTTTTTTAA
AATTGTCCGCGCCGTGGGTGTTTTGCGGTGTGGAGCATCGACTTTGTTTC
GTATGAATTGCTGTTGTACTAGCGCGAAACGTAAAGTCGTGTGTGTCTTT
GTGTCGCTCTTTGTAATGTTTCCACCACGCGAACCCTGAGGTATGCAGAG
AGGCGGAGGAGGTACGGCATACTAGCTGCTCTTCGGTGGTTGTACGATGA
TCTGTGCTGCAAGGGGGGGGACCCGAGTAAAGATTACACGGTGGACATTT
TTGATGGCGTGCAGAGAATGGCCCTTGGAGATGCGTTTCACATGACACAG
GTGGACATGGGTTACGTGTTCGAGAGCCTTAGCTTTGTACTTCCAAATAC
ACCATTTGCACGAAAAATTTGTCGGTGTACCACCTGCTTCTGAAAGCCCT
ATTTAATTGAACGTCGATCAATGTTGCCACGTCCGTCGCAGAACCTCGTG
GGTGCGGCGACTTCGAAGGACCACCCGCGAAAGATCGTTTTTGCGAAAGC
GGTAGGCCAGGCCGTTCGAGCCAAATACGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:46818..47948-

>mRNA_P-littoralis_Contig776.27.1 ID=mRNA_P-littoralis_Contig776.27.1|Name=mRNA_P-littoralis_Contig776.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig776:46818..47948- (Pylaiella littoralis U1_48)
GCCGTTGAGCGGGAGCAACAAGCCATCGAGAAGGAGCGGCAGAAAGCCAT
CAAGAAGAAGGACGAGCCCTATCCTCGGCGGCCTACGTGGAAGTTCAACC
GTGGCACTCTCACGTCGACCCCGTCCATCGCCACGTTGAACGCCTTTTAC
ACGGCTGGGCACGAGGGGAACCTCGTGGGTGCGGCGACTTCGAAGGACCA
CCCGCGAAAGATCGTTTTTGCGAAAGCGGTAGGCCAGGCCGTTCGAGCCA
AATACGAG
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