mRNA_P-littoralis_Contig776.24.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig776.24.1 vs. uniprot
Match: Q8QNN2_ESV1K (EsV-1-29 n=2 Tax=root TaxID=1 RepID=Q8QNN2_ESV1K) HSP 1 Score: 710 bits (1833), Expect = 4.450e-248 Identity = 367/547 (67.09%), Postives = 428/547 (78.24%), Query Frame = 2
Query: 50 NDRSRCFKRSGKFVNFGIGDTR-FTT*AISF*RTVWFST*SRRHRER*I*EILP*AVMAISTRTST*SGL*AASTKGFRRTASANLAQVIKTCSGKNYASSYLRGISYTNKFDADCLIHLNGKGMKDVCRIMGRDISELHVRAADLLNETYRGHRSNGDSVTPVSAIRANDMPAFKMMYRKKIVKSQKIGAKECLITTQVSDA*ERFQTSLIYLRENFAQETKMSIGNDADSDEQLIGEQLDACNTSMNNGVSYICGMPRVRKTSSLCQIIENSEGTLILTPTXXXXXXXXXXXXSHVAREVVQQRANKNMIPESTFSVEVLAFGILHIHTWHSDADQSHFSLSERSSTMMKKFQDSDGNIRVETLIIEKTSMADIFQTSAILAELCKFPSFKRVVFCGDHNQLESIAKGSVLKDVMKSTNVPGTVLQVNHRSKSALSENLRRIITSSLAFIKEDETFEIKEYGVEDCLVETDHFNRRRVIVRDPIIRLFLEHMESGIPCHAFAHTNVEVKQLDAGIKLALFGEDSVLFPPGCKVRVKYYEILSTVV 1687
+D+++C+KRSGKFVNFG+GD R + + TV+F S R + + L + NL+ VIK CSG + ASS LRGI YTNKF A+CLIHLNG GMKDVCRIMG D S LHVRAADLLNE+YRGHRSNGDSV PVS IRANDMPAFKMMYR+KIV Q+IG+KE LIT +V DA E F+ SL +L+ NF E+K+ IGND D+DEQLI EQL+ACN +MNNGVSYICGMP V KTSSLC++I+NS+GT+ILTP SHVAREVV QRA KN+IPESTFSVEVLAFGI H+HTWH DAD S F+ S+RS MMKKFQ SDGNI+VETLIIE+TSMADIFQTSA+LA CKFPSFKRVVFCGDHNQLESI+KGSVL+DVM S++VPGT+LQVNHRSKS LS+NL RIITSSLAF++ED+TFEI+E+G++DC VETD FNRRRVI+RDPIIRLFLEH+E GIPCH FAHTN+EVKQL++GIKLALFG+DSVLFP GCKVRVK E++S V
Sbjct: 20 DDKTQCYKRSGKFVNFGVGDNRVYDVGEVFLKNTVFFGIISETARVITLGSPSSSGDSEFDKNIALVWALSRVDHAFSKNCTPENLSGVIKACSGNSCASSCLRGIKYTNKFGAECLIHLNGNGMKDVCRIMGHDASGLHVRAADLLNESYRGHRSNGDSVIPVSGIRANDMPAFKMMYREKIVMPQRIGSKEFLITKEVFDAEELFKASLNHLKTNFVMESKIEIGNDPDADEQLIEEQLNACNIAMNNGVSYICGMPGVGKTSSLCKVIQNSDGTVILTP-------------SHVAREVVHQRAKKNLIPESTFSVEVLAFGIRHVHTWHPDADTSEFNPSDRSCQMMKKFQQSDGNIQVETLIIEETSMADIFQTSAVLAAFCKFPSFKRVVFCGDHNQLESISKGSVLRDVMVSSSVPGTILQVNHRSKSGLSQNLPRIITSSLAFMEEDDTFEIREHGIDDCHVETDKFNRRRVIIRDPIIRLFLEHVERGIPCHVFAHTNIEVKQLNSGIKLALFGDDSVLFPVGCKVRVKDCEVISPAV 553
BLAST of mRNA_P-littoralis_Contig776.24.1 vs. uniprot
Match: A0A6H5KKN2_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN2_9PHAE) HSP 1 Score: 587 bits (1512), Expect = 2.480e-189 Identity = 326/558 (58.42%), Postives = 388/558 (69.53%), Query Frame = 2
Query: 50 NDRSRCFKRSGKFVNFGIGDTR-FTT*AISF*RTVWFST*SRRHRER*I*EILP*AVMAISTRTST*SG-----------L*AASTKGFRRTASANLAQVIKTCSGKNYASSYLRGISYTNKFDADCLIHLNGKGMKDVCRIMGRDISELHVRAADLLNETYRGHRSNGDSVTPVSAIRANDMPAFKMMYRKKIVKSQKIGAKECLITTQVSDA*ERFQTSLIYLRENFAQETKMSIGNDADSDEQLIGEQLDACNTSMNNGVSYICGMPRVRKTSSLCQIIENSEGTLILTPTXXXXXXXXXXXXSHVAREVVQQRANKNMIPESTFSVEVLAFGILHIHTWHSDADQSHFSLSERSSTMMKKFQDSDGNIRVETLIIEKTSMADIFQTSAILAELCKFPSFKRVVFCGDHNQLESIAKGSVLKDVMKSTNVPGTVLQVNHRSKSALSENLRRIITSSLAFIKEDETFEIKEYGVEDCLVETDHFNRRRVIVRDPIIRLFLEHMESGIPCHAFAHTNVEVKQLDAGIKLALFGEDSVLFPPGCKVRVKYYEILSTVV 1687
+D+++ +K +GKFVNFGIG+ R F + V F + R V+ + + + T G L + NLA V K CSG AS+ LRGI Y NKF A C IHLNGKGMK+VCRIMG + SELHVRAADLLNETY GHR+NGDS MMYR+KIVKSQK+G+KE LIT +V +A E F+ S+ +L E F+ + + IGND DSDEQL+ QL ACNT+MNNG SYICGMP V KTSSLC+IIENS+GT ILTP SHVAREVV QRA KN+IPESTFSVEVLAF I HIHTWH D+ S F+ SERS+ MMKKFQD++GNI+VETLIIE+TSMADIFQT VVFCGD NQLESI+KG VLKDVM+S VPGTVL++NHRS S LS NL RIITSSLAF++ED+TFEI+EYG+++C VETD F RRRVIV DPIIRLFLEH+E+GI CH FAHTN+EVK+L++GIKLALFGEDSVL+P GCKVRVK E+++ V
Sbjct: 937 DDKTQGYKTNGKFVNFGIGENRVFDVGDVFLKSNVTFGIITETPR-----------VITLGSPSCTGDGDFDRNVGLIWALSRVDHVFSKNCTPDNLAGVFKACSGSGCASACLRGIKYINKFGAPCWIHLNGKGMKEVCRIMGHEASELHVRAADLLNETYGGHRANGDS----------------MMYREKIVKSQKVGSKEFLITKEVFEAEELFKASVKHLVEGFSVDARFDIGNDPDSDEQLVEGQLTACNTAMNNGASYICGMPGVGKTSSLCKIIENSKGTAILTP-------------SHVAREVVHQRAKKNLIPESTFSVEVLAFAIRHIHTWHPDSVASDFNPSERSAQMMKKFQDAEGNIQVETLIIEETSMADIFQT---------------VVFCGDPNQLESISKGCVLKDVMESPGVPGTVLKINHRSSSGLSNNLGRIITSSLAFMEEDDTFEIREYGMDECHVETDRFGRRRVIVHDPIIRLFLEHVENGISCHVFAHTNIEVKKLNSGIKLALFGEDSVLYPIGCKVRVKDCEVITPPV 1439
BLAST of mRNA_P-littoralis_Contig776.24.1 vs. uniprot
Match: A0A6H5JNJ7_9PHAE (UvrD_C_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ7_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 6.980e-129 Identity = 211/465 (45.38%), Postives = 315/465 (67.74%), Query Frame = 2
Query: 302 LAQVIKTCSGKNYASSYLRGISYTNKFDADCLIHLNGKGMKDVCRIMGRDISELHVRAADLLNETYRGHRSNGDSVTPVSAIRANDMPAFKMMYRKKIVKSQKIGAKECLITTQVSDA*ERFQTSLIYLRENFAQETKMSIGNDAD-----SDEQLIGEQLDACNTSMNNGVSYICGMPRVRKTSSLCQIIENSEGTLILTPTXXXXXXXXXXXXSHVAREVVQQRANKNMIPESTFSVEVLAFGILHIHTWHSDADQS-HFSLSERSSTMMKKFQDSDGNIRVETLIIEKTSMADIFQTSAILAELCKFPSFKRVVFCGDHNQLESIAKGSVLKDVMKSTNVPGTVLQVNHRSKSALSENLRRIITSSLAFIKEDETFEIKEYGVEDCLVETDHFNRRRVIVRDPIIRLFLEHMESGIPCHAFAHTNVEVKQLDAGIKLALFGEDSVLFPPGCKVRVKYYEILS 1678
+++++K G+ S LRGISY N++ +H++G+ + ++CRIMG++ +L+ RAAD+LN YRGHRS GDSV VS+I +D+P + ++ R+KI+++Q + +E LIT +V DA E ++L L + F ++++ NDA S E LI EQL+AC +MNN V Y+CG P KTS LC+I++ S+GT++LTP SHV+REVV QRA +N + +TFSVEVLA+ + H+ W D + + +S+RS M+KF+ D + +E L+IE+ SMAD+FQ S ++ + C+ PS K VVFCGDH QL+S++KG VL+DVM+ +PG +L+VNHRS SALSENLR I+ SSL I+ED++FE+ + +E C VETD F R RV+ PI+ +FL++M++G+P H F + NVEV +++ +K A+FG DSV+FP CKVRVK +++S
Sbjct: 105 MSKILKRLGGR-CDSECLRGISYRNQYVDPVDVHVDGRALCEICRIMGQEPRDLYKRAADILNAKYRGHRSTGDSVIKVSSIPQDDLPVYMILVREKILRAQDLDGQEYLITKEVDDAEETLVSTLHELSQRF-DSPEITVTNDAQDSGASSREVLIQEQLEACTIAMNNPVCYLCGFPGTGKTSVLCRILKESKGTVVLTP-------------SHVSREVVCQRAIQNGVDLNTFSVEVLAYAVRHVGEWLPDYENNGEHPISQRSIDFMEKFKGEDQCLHIEILVIEEASMADVFQASRVIEQFCRIPSLKMVVFCGDHRQLQSVSKGRVLEDVMECGTIPGKILEVNHRSGSALSENLRHILKSSLINIEEDDSFEVVDSRIERCEVETDSFGRDRVMALQPIVDIFLKNMDAGLPTHVFGYMNVEVNKINEALKTAIFGHDSVMFPNHCKVRVKDPDLIS 554
BLAST of mRNA_P-littoralis_Contig776.24.1 vs. uniprot
Match: A0A835ZCI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 8.630e-13 Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query: 1130 RVETLIIEKTSMADIFQTSAIL-AELCKFPSFKRVVFCGDHNQLESIAKGSVLKDVMKSTNVPGTVLQVNHRSKSALSENLRRIITSSLAFIKEDETFEIKEYGVEDCLVETDHFNRRRVIVRDPIIRLFLEHMESGIPCHAFAHTNVEVKQLDAGIKLAL 1609
+V TL+ E+ M D+ S I+ A + FP R++FCGD QL+S+ +GSVL+D++ + VP T L N+RS AL+ N I+ I D+TF E ED T+ + + I++ F++ SG H A+ N EV ++ I AL
Sbjct: 401 KVTTLVFEEAGMHDLGSVSRIIHAAVALFPRLCRIIFCGDPKQLQSVERGSVLRDLINA-GVPHTELTKNYRSGEALARNFSAIVYQRPQDITFDDTFVKVEVQQEDMQYVTNGKKEPKQLPLAKIVQEFIKDSASGEEPHIVAYMNCEVDAINNSIAQAL 560 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig776.24.1 >prot_P-littoralis_Contig776.24.1 ID=prot_P-littoralis_Contig776.24.1|Name=mRNA_P-littoralis_Contig776.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=363bp MSIGNDADSDEQLIGEQLDACNTSMNNGVSYICGMPRVRKTSSLCQIIENback to top mRNA from alignment at P-littoralis_Contig776:36155..38205- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig776.24.1 ID=mRNA_P-littoralis_Contig776.24.1|Name=mRNA_P-littoralis_Contig776.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2051bp|location=Sequence derived from alignment at P-littoralis_Contig776:36155..38205- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig776:36155..38205- >mRNA_P-littoralis_Contig776.24.1 ID=mRNA_P-littoralis_Contig776.24.1|Name=mRNA_P-littoralis_Contig776.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig776:36155..38205- (Pylaiella littoralis U1_48)back to top |