mRNA_P-littoralis_Contig776.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.23.1
Unique NamemRNA_P-littoralis_Contig776.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: Q8QNC4_ESV1K (EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K)

HSP 1 Score: 107 bits (266), Expect = 1.650e-25
Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = 2
Query:    5 KVPTRLSFRVENWSCPLQCQRCGFVKSDRFPCLNKVCFGTPLC*RHNREEYGVVAKQSTIPGAGKGLFATKSF--STMVRPLISIVSTSATREK*RHHTRSA*GRIAASTLRVREGWVRLRMLCSRAVEKYLTSRF----TILC----QAYRRLRGGGQ----IWLRARKHIDVGEDIF 499
            + PT LSFR  NWSCPL C +C   + D   C N+VCFG+P+C  HN  +YGV  K STIPGAGKGLFAT+     + + P     +T         H R   G  AA T +V+   +     CSR +     ++F    T+        + R R  G     +WL++ K I+ G++IF
Sbjct:    6 RAPTELSFRTANWSCPLTCGQCTHTRDDGLRCKNRVCFGSPVCWVHNARKYGVKIKDSTIPGAGKGLFATRKIPRDSWICPYSGEATTMNCI-----HQRYPEGETAAYTEQVQAN-LAYDCACSRGIGSLANAQFNSNGTVSALRRHNCFSRYRPVGDGVPGVWLKSTKVIEEGQEIF 178          
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: B5LWM5_9PHYC (Putative lysine methyltransferase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM5_9PHYC)

HSP 1 Score: 102 bits (254), Expect = 1.020e-23
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    5 KVPTRLSFRVENWSCPLQCQRCGFVKSDRFPCLNKVCFGTPLC*RHNREEYGVVAKQSTIPGAGKGLFATK 217
            + PT L F  +NWSCPL+C +C F + +   C N+VCFG PLC  HN +++GV  KQSTIPGAGKGLFAT+
Sbjct:    7 RAPTELRFETDNWSCPLKCNKCTFTRPNGLRCKNRVCFGFPLCWIHNSQKFGVKIKQSTIPGAGKGLFATR 77          
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: A0A6H5JFB7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.800e-21
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    5 KVPTRLSFRVENWSCPLQCQRCGFVKSDRFPCLNKVCFGTPLC*RHNREEYGVVAKQSTIPGAGKGLFAT 214
            + PT LSFR  +WSCPL+C +C   +++   C N+VCFG+P+C  HN  +YGV  K STIPGAGKGLFAT
Sbjct:    6 RSPTELSFRTADWSCPLKCGQCTHTRANGTRCRNRVCFGSPVCWLHNCIKYGVEIKDSTIPGAGKGLFAT 75          
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: A0A6H5JAG7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-17
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  217 IVQYDGETVDKHCIDKRYPGEMTASYAECV-GKNRC-IDSACSRGLGSLANAMFTSSGKVSHITFHNSLSSLQTATRRRPDMATRQ-KTHRCRGRHFHHYGND-YRLEHNHSTRHRQTVADTRPC 579
            I  Y GE   K CI KRYPG+MTA+YAE + G  +  IDSAC RG+ SLAN +F ++G VS ++ HN +S  +      P +  +  K  +     F+ YG+  Y L+HNHST+ R    DTRPC
Sbjct:   84 ICPYLGEKTSKDCIQKRYPGDMTAAYAEILPGPEQLHIDSACKRGVASLANGLFNANGSVSSLSRHNCVSRYRPVGDGVPGVWLKSTKPLKIGDEIFNWYGDGGYMLQHNHSTKRRTKAPDTRPC 208          
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: A0A6H5J8Q0_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.400e-17
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  217 IVQYDGETVDKHCIDKRYPGEMTASYAECV-GKNRC-IDSACSRGLGSLANAMFTSSGKVSHITFHNSLSSLQTATRRRPDMATRQ-KTHRCRGRHFHHYGND-YRLEHNHSTRHRQTVADTRPC 579
            I  Y GE   K CI KRYPG+MTA+YAE + G  +  IDSAC RG+ SL+N +F ++G VS ++ HN +S  +      P +  +  K  +     F+ YG+  Y L+HNHST+ R    DTRPC
Sbjct:   45 ICPYLGEKTSKDCIQKRYPGDMTAAYAEMLPGPEQLHIDSACKRGVASLSNGLFNANGSVSSLSRHNCVSRYRPVGDGVPGVWLKSTKPLKIGDEIFNWYGDGGYMLQHNHSTKRRTKAPDTRPC 169          
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: Q6XLV1_9PHYC (FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV1_9PHYC)

HSP 1 Score: 82.4 bits (202), Expect = 7.060e-16
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 2
Query:   11 PTRLSFRVEN------WSCPLQCQRCGFVKSDRFPCLNKVCFGTPLC*RHNREEYGVVAKQSTIPGAGKGLFATKSF 223
            P  +SF  E       WSCPL CQRC +V+ +   C  +VC G P C  H R  +GV  K STIP AGKGLFAT+ F
Sbjct:   14 PREMSFVFEKDEDDSTWSCPLLCQRCAYVRPNGEQCKKRVCVGHPFCWIHVRAAFGVTVKTSTIPNAGKGLFATRDF 90          
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.240e-8
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 2
Query:    2 TKVPTRLSFRVENWSCPLQCQRCGFVKSDRFPCLNKVCFGTPLC*RHNREEYGVVAKQSTIPGAGKGLFATKS 220
            ++  T   F+  +WS PL   RC         C  +V FG PL   HN+ +Y V  K STIPGAG+GLFAT+S
Sbjct:    3 SRTKTSWYFQTADWSLPLVSGRCQHETRKGTRCKKRVSFGYPLRSVHNKLKYEVQIKPSTIPGAGEGLFATRS 75          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q8QNC4_ESV1K1.650e-2536.87EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K[more]
B5LWM5_9PHYC1.020e-2357.75Putative lysine methyltransferase n=1 Tax=Feldmann... [more]
A0A6H5JFB7_9PHAE6.800e-2157.14SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JAG7_9PHAE1.200e-1744.00SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8Q0_9PHAE1.400e-1743.20SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q6XLV1_9PHYC7.060e-1649.35FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6H5K4T1_9PHAE1.240e-843.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:35565..36146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size584
Hectar predicted targeting categoryother localisation
Exons1
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.2401068-CDS-P-littoralis_Contig776:35564..361461680791599.2401068-CDS-P-littoralis_Contig776:35564..36146Pylaiella littoralis U1_48CDSP-littoralis_Contig776 35565..36146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.23.1prot_P-littoralis_Contig776.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 35565..36146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.23.1

>prot_P-littoralis_Contig776.23.1 ID=prot_P-littoralis_Contig776.23.1|Name=mRNA_P-littoralis_Contig776.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
NKSAYPVKLSCRKLVVPPPVSTMRLCEIRSFSVPKQSLFRDTPLLATQPR
RVRCGRETINYSGCGQRTVRNKIVQYDGETVDKHCIDKRYPGEMTASYAE
CVGKNRCIDSACSRGLGSLANAMFTSSGKVSHITFHNSLSSLQTATRRRP
DMATRQKTHRCRGRHFHHYGNDYRLEHNHSTRHRQTVADTRPC*
back to top

mRNA from alignment at P-littoralis_Contig776:35565..36146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.23.1 ID=mRNA_P-littoralis_Contig776.23.1|Name=mRNA_P-littoralis_Contig776.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig776:35565..36146+ (Pylaiella littoralis U1_48)
AACAAAAGTGCCTACCCGGTTAAGCTTTCGTGTCGAAAACTGGTCGTGCC CCCTCCAGTGTCAACGATGCGGCTTTGTGAAATCAGATCGTTTTCCGTGC CTAAACAAAGTCTGTTTCGGGACACCCCTTTGTTAGCGACACAACCGCGA AGAGTACGGTGTGGTCGCGAAACAATCAACTATTCCGGGTGCGGGCAAAG GACTGTTCGCAACAAAATCGTTCAGTACGATGGTGAGACCGTTGATAAGC ATTGTATCGACAAGCGCTACCCGGGAGAAATGACGGCATCATACGCGGAG TGCGTAGGGAAGAATCGCTGCATCGACTCTGCGTGTTCGAGAGGGTTGGG TTCGCTTGCGAATGCTATGTTCACGAGCAGTGGAAAAGTATCTCACATCA CGTTTCACAATTCTCTGTCAAGCTTACAGACGGCTACGCGGCGGCGGCCA GATATGGCTACGCGCCAGAAAACACATCGATGTAGGGGAAGACATTTTCA TCATTACGGTAACGACTACAGGTTGGAACACAACCACAGCACAAGACATC GCCAAACGGTGGCCGACACCCGCCCCTGTTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig776:35565..36146+

>mRNA_P-littoralis_Contig776.23.1 ID=mRNA_P-littoralis_Contig776.23.1|Name=mRNA_P-littoralis_Contig776.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig776:35565..36146+ (Pylaiella littoralis U1_48)
AACAAAAGTGCCTACCCGGTTAAGCTTTCGTGTCGAAAACTGGTCGTGCC
CCCTCCAGTGTCAACGATGCGGCTTTGTGAAATCAGATCGTTTTCCGTGC
CTAAACAAAGTCTGTTTCGGGACACCCCTTTGTTAGCGACACAACCGCGA
AGAGTACGGTGTGGTCGCGAAACAATCAACTATTCCGGGTGCGGGCAAAG
GACTGTTCGCAACAAAATCGTTCAGTACGATGGTGAGACCGTTGATAAGC
ATTGTATCGACAAGCGCTACCCGGGAGAAATGACGGCATCATACGCGGAG
TGCGTAGGGAAGAATCGCTGCATCGACTCTGCGTGTTCGAGAGGGTTGGG
TTCGCTTGCGAATGCTATGTTCACGAGCAGTGGAAAAGTATCTCACATCA
CGTTTCACAATTCTCTGTCAAGCTTACAGACGGCTACGCGGCGGCGGCCA
GATATGGCTACGCGCCAGAAAACACATCGATGTAGGGGAAGACATTTTCA
TCATTACGGTAACGACTACAGGTTGGAACACAACCACAGCACAAGACATC
GCCAAACGGTGGCCGACACCCGCCCCTGTTGA
back to top