mRNA_P-littoralis_Contig776.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.22.1
Unique NamemRNA_P-littoralis_Contig776.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig776.22.1 vs. uniprot
Match: Q8QNN0_ESV1K (EsV-1-31 n=2 Tax=root TaxID=1 RepID=Q8QNN0_ESV1K)

HSP 1 Score: 92.4 bits (228), Expect = 7.270e-19
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:  448 TLLMKKARCFFISNLLKSILALNPSDRSKDVDGKTAMDFAM*DCVKRALLEYRKKHNWFRRRGLLFLRERNWDNVVDDMLVYRVGGVPEGIFRTIVAY 741
            TLLMKKARCF++  LL+ +LALNPS   KD +G+TA+DF + + VK  L+ Y +  NW RR+ L+ LRE+    V  +  V R  G+P GIFR+I+A+
Sbjct:  154 TLLMKKARCFYVFRLLRPLLALNPSVFLKDNEGRTALDFTVEEEVKAHLIRYGRDQNWRRRKTLILLREKTRVFVAKEDCVLRTVGLPTGIFRSILAF 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNN0_ESV1K7.270e-1948.98EsV-1-31 n=2 Tax=root TaxID=1 RepID=Q8QNN0_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:34625..35368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP68
PFAMsAnk,Ank_2,Ank_4
Model size744
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-07
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size399
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.0751963-UTR-P-littoralis_Contig776:34624..347951680791599.0751963-UTR-P-littoralis_Contig776:34624..34795Pylaiella littoralis U1_48UTRP-littoralis_Contig776 34625..34795 -
1680791599.0969045-UTR-P-littoralis_Contig776:35194..353681680791599.0969045-UTR-P-littoralis_Contig776:35194..35368Pylaiella littoralis U1_48UTRP-littoralis_Contig776 35195..35368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.0865107-CDS-P-littoralis_Contig776:34795..351941680791599.0865107-CDS-P-littoralis_Contig776:34795..35194Pylaiella littoralis U1_48CDSP-littoralis_Contig776 34796..35194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.22.1prot_P-littoralis_Contig776.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 34796..35194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.22.1

>prot_P-littoralis_Contig776.22.1 ID=prot_P-littoralis_Contig776.22.1|Name=mRNA_P-littoralis_Contig776.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MSPLHRAKNLGVTKALIQNGGLVNSADTYGNTPLHCVNYVEVVRLLLSEG
ANPNARNLKGETPVHLSAYASKVLALVKVGADVDEVDNKGQTLLMKKARC
FFISNLLKSILALNPSDRSKDVDGKTAMDFAM*
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mRNA from alignment at P-littoralis_Contig776:34625..35368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.22.1 ID=mRNA_P-littoralis_Contig776.22.1|Name=mRNA_P-littoralis_Contig776.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig776:34625..35368- (Pylaiella littoralis U1_48)
AGGCTTCACTGTATCCTGGATGTCAATCAAATTGTACGGCTGATAGAGAG
CTGCGCGGATGTCAATCTACAACACTGTGACGGCAGCACGGCTCTTCATA
TCGCCAGATCATCTGCCGTGGTCAGGGTTCTGATCGAACACGGTGCACTT
GTCAATATAAGAAACAACAGGGGGATGTCGCCTCTTCATCGCGCGAAGAA
CCTTGGTGTCACGAAGGCTTTGATCCAGAATGGCGGTCTCGTCAACAGCG
CTGACACCTACGGAAATACGCCTCTGCATTGCGTGAATTACGTGGAAGTC
GTGCGGTTGTTGCTCTCGGAAGGAGCCAATCCGAATGCGCGCAACTTGAA
GGGAGAAACACCAGTCCACCTGTCCGCGTACGCGTCGAAAGTTCTTGCAC
TGGTGAAAGTCGGCGCAGATGTTGATGAAGTGGACAACAAGGGTCAGACA
CTTTTGATGAAAAAGGCCAGGTGTTTTTTTATTTCGAATTTGCTCAAGAG
TATCCTCGCACTCAATCCGTCCGATCGCTCCAAGGATGTCGACGGCAAGA
CGGCGATGGATTTCGCAATGTAGGATTGTGTGAAGAGAGCGCTTTTGGAG
TACCGGAAGAAACACAACTGGTTTCGCAGGAGAGGGCTCCTATTTCTCAG
AGAACGTAACTGGGATAATGTTGTGGACGACATGCTAGTTTACAGAGTGG
GGGGTGTTCCCGAAGGGATTTTTAGAACGATAGTGGCGTACGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:34625..35368-

>mRNA_P-littoralis_Contig776.22.1 ID=mRNA_P-littoralis_Contig776.22.1|Name=mRNA_P-littoralis_Contig776.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig776:34625..35368- (Pylaiella littoralis U1_48)
ATGTCGCCTCTTCATCGCGCGAAGAACCTTGGTGTCACGAAGGCTTTGAT
CCAGAATGGCGGTCTCGTCAACAGCGCTGACACCTACGGAAATACGCCTC
TGCATTGCGTGAATTACGTGGAAGTCGTGCGGTTGTTGCTCTCGGAAGGA
GCCAATCCGAATGCGCGCAACTTGAAGGGAGAAACACCAGTCCACCTGTC
CGCGTACGCGTCGAAAGTTCTTGCACTGGTGAAAGTCGGCGCAGATGTTG
ATGAAGTGGACAACAAGGGTCAGACACTTTTGATGAAAAAGGCCAGGTGT
TTTTTTATTTCGAATTTGCTCAAGAGTATCCTCGCACTCAATCCGTCCGA
TCGCTCCAAGGATGTCGACGGCAAGACGGCGATGGATTTCGCAATGTAG
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