mRNA_P-littoralis_Contig1196.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1196.9.1
Unique NamemRNA_P-littoralis_Contig1196.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Match: A0A6H5K7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.870e-32
Identity = 77/209 (36.84%), Postives = 115/209 (55.02%), Query Frame = 2 
Query:  953 KSEANFWGQRTNKLYWCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAPLGAAMDVARKGFRAE-LRPLQDLLSQQDKRASIASIPTKDFRAWGEALALWIFRFSALSHPPESFDEFPPPPVPEFAAVREFVKTGATWFHMFAGSARAGG 1576
            +S A+ W  R  +L W +RG+RG+++ N++ LQ  +G  V    +     R++SG+N+  F PVGN+  +SV D FDL C++++ +L +GL       +A   ARL P+  AM  AR   R + LR + D   +   R + A +P  DFR W  A+ LW+     L  PPESF+ F PPPVP F  +  F  +G+    MF G+   GG
Sbjct:  202 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSAD-NAAALARLLPMEQAMLSARGTLRMQALRHMGDFQGR-GSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRMF-GTVGGGG 405
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BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Match: A0A6H5K5G9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G9_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.190e-31
Identity = 70/194 (36.08%), Postives = 104/194 (53.61%), Query Frame = 2 
Query:  998 WCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAPLGAAMDVARKGFRAE-LRPLQDLLSQQDKRASIASIPTKDFRAWGEALALWIFRFSALSHPPESFDEFPPPPVPEFAAVREFVKTGATWFHMFAGSARAGG 1576
            W +RG+RG+++  ++ LQ  +G  V    +     R++SG+N+  F PVGN+  +SV D FDL C++++ +L +GL       +A   ARL P+  AM  AR   R + LR + D   +   R + A +P  DFR W  A+ LW+     L  PPESF+ F PPPVP F  +  F  +G+    MF      GG
Sbjct:    2 WALRGKRGIDVPKKETLQTMMGGTVTGTVKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSAD-NAAALARLLPMEQAMLSARGTLRMQALRHMGDFQGR-GSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRMFGTVGGGGG 193
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BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Match: A0A6H5K433_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K433_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.660e-31
Identity = 68/186 (36.56%), Postives = 102/186 (54.84%), Query Frame = 2 
Query:  998 WCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAPLGAAMDVARKGFRAE-LRPLQDLLSQQDKRASIASIPTKDFRAWGEALALWIFRFSALSHPPESFDEFPPPPVPEFAAVREFVKTGATWFHMF 1552
            W +RG+RG+++ N++ LQ  +G  V    +     R++SG+N+  F PVGN+  +SV D FDL C++++ +L +GL       +A   ARL P+  AM  AR   R + LR + D   +   R + A +P  DFR W  A+ LW+        PPESF+ F PPPVP F  +  F  +G+    MF
Sbjct:    2 WALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSAD-NAAALARLLPMEQAMLSARGTLRMQALRHMGDFQGR-GSRGTFADLPNDDFREWASAVMLWMLPMQNFPVPPESFERFGPPPVPRFDGINGFSMSGSIALRMF 185
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BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.890e-31
Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 2 
Query:  953 KSEANFWGQRTNKLYWCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAPLGAAMDVARKGFRAE-LRPLQDLLSQQDKRASIASIPTKDFRAWGEALALWIFRFSALSHPPESFDEFPPPPVPEFAAVREFVKTGATWFHMF 1552
            +S A+ W  R  +L W +RG+RG+++ N++ LQ  +G  V    +     R++SG+N+  F PVGN+  +SV D FDL C++++ +L +GL       +A   ARL P+  AM  AR   R + LR + D   +   R + A +P  DFR W  A+ LW+     L  PPESF+ F PPPVP F  +  F  +G+    MF
Sbjct: 1665 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSAD-NAAALARLLPMEQAMLSARGTLRMQALRHMGDFQGR-GSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRMF 1861
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BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Match: A0A6H5L5C2_9PHAE (C3H1-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.970e-31
Identity = 72/201 (35.82%), Postives = 110/201 (54.73%), Query Frame = 2 
Query:  953 KSEANFWGQRTNKLYWCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAPLGAAMDVARKGFRAE-LRPLQDLLSQQDKRASIASIPTKDFRAWGEALALWIFRFSALSHPPESFDEFPPPPVPEFAAVREFVKTGATWFHMF 1552
            +S A+ W  R  +L W +RG+RG+++ N++ LQ  +G  V    +     R++SG+N+  F PVGN+  +SV D FDL C++++ +L +GL       +A   ARL P+  AM  AR   R + LR + D   +   R + A +P  DFR W  A+ LW+     L  PPESF+ F PPPVP    +  F  +G+    +F
Sbjct:  202 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGKLSVPDHFDLTCAAIVNVLKFGLSATSAD-NAAALARLLPMEQAMLSARGTLRMQALRHMGDFQGR-GSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRLDGINGFSMSGSIALRIF 398
[Close]
BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Match: A0A6H5K9I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.500e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 2 
Query:  953 KSEANFWGQRTNKLYWCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAPLGAAMDVARKGFRAE-LRPLQDLLSQQDKRASIASIPTKDFRAWGEALALWIFRFSALSHPPESFDEF 1477
            +S A+ W  R  +L W +RG+RG+++ N++ LQ+ +G  V    R     R++SG+ +  F PVGN+  +SV D FDL C++++ +L +GL       +A   ARL P+  AM  AR   R + LR + D   +   R + A +P  DFR W  A+ LW+     L  PPESF+ F
Sbjct:  225 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQSMMGGTVTGTDRTLQQLRTMSGLIVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSAD-NAAALARLLPIEQAMLSARGTLRMQALRHMGDFQGR-GSRGTFADLPNDDFREWASAVMLWMLPMQNLPVPPESFERF 396
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1196.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K7F0_9PHAE2.870e-3236.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5G9_9PHAE1.190e-3136.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K433_9PHAE3.660e-3136.56C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JN35_9PHAE3.890e-3136.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5C2_9PHAE6.970e-3135.82C3H1-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5K9I5_9PHAE4.500e-2536.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1196contigP-littoralis_Contig1196:55115..56714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1602
Hectar predicted targeting categoryother localisation
Exons1
Cds size774
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.3569188-UTR-P-littoralis_Contig1196:55114..559401680789503.3569188-UTR-P-littoralis_Contig1196:55114..55940Pylaiella littoralis U1_48UTRP-littoralis_Contig1196 55115..55940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.3668509-CDS-P-littoralis_Contig1196:55940..567141680789503.3668509-CDS-P-littoralis_Contig1196:55940..56714Pylaiella littoralis U1_48CDSP-littoralis_Contig1196 55941..56714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1196.9.1prot_P-littoralis_Contig1196.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1196 55941..56714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1196.9.1

>prot_P-littoralis_Contig1196.9.1 ID=prot_P-littoralis_Contig1196.9.1|Name=mRNA_P-littoralis_Contig1196.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MAIHGGVGAMVGPVPGGVPFPGPVAGGGVVGHGGQQAVKDARKSEANFWG
QRTNKLYWCIRGRRGVEIGNEDDLQNALGSQVCVNARIFSVFRSLSGINI
TSFAPVGNAASISVEDQFDLACSSVMTLLTYGLRGDDIGADARCDARLAP
LGAAMDVARKGFRAELRPLQDLLSQQDKRASIASIPTKDFRAWGEALALW
IFRFSALSHPPESFDEFPPPPVPEFAAVREFVKTGATWFHMFAGSARAGG
RERRRGRH
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mRNA from alignment at P-littoralis_Contig1196:55115..56714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1196.9.1 ID=mRNA_P-littoralis_Contig1196.9.1|Name=mRNA_P-littoralis_Contig1196.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1600bp|location=Sequence derived from alignment at P-littoralis_Contig1196:55115..56714+ (Pylaiella littoralis U1_48)
CAGAATACAGCAGTAGGGCAGGTACGCCTCGAGGTGTACGAAGAAGGATG
TACCCTCTGCTCACTCGTTGCCCCTGACGCTCGTGAGCGAGAACAAGCGA
GCGTGTTGCAGCCAAGGGGTATCTGGTAGACCTGTCTTCTTTCTGTCTTC
CCTCGTGCGTTGGTCTGCTAGACCTGTCTGCTATTTCTTTCATCGGTCAG
CTTCGTGTCTTCTTGGCTCGGTCTTTGGGACTCAATTAATTCCGACAGAG
AGTGCGGTCTTTGGGACTCAATTAATTCCGACAGCAAGTGCAGCTGCGAG
ATGGACTCAGCGGATGACATCGAAGGTGGGATTGGGAAGGGCAAGGGCAG
GACCCAAGAGCCGCATACCTCTGTCGTAGAGGCCTCGGGGGGCGTTGGGG
AAGCCTCAGCGGTCGTGGCGCAGGCGGTGGCGGCTGCGGCCGCGGCCGCG
GCGGGGGTGCATCGGCGGGGGTTCGACGGCATCGCATTTTCTTGCCGACG
AAACTGCTGCCGAAGATTTGGCAACGACGCAACAGCAGCAAGATACCGAA
AACGACGCGTACGTGTCGCGCCTTAGTTCGTCAACCCCACCGCAGCAGCA
ACAGTTCCCGCGTGCTCGGGAGGAACGGGGCGTCCAGCAGTCGCTTACGG
CATCAGGTGGCGCGGCTGCCGGGCCTGGTCAGGAAGCGGCGACTGTCGCC
CACATTAACCAAGTCCTTCAGGATTTGCAGGGTGTGCTGGCTGCCGTTGG
GGCCGTGTCTAATCGCGTGGGGGCCGTGTCTGCTCGCGTAGCCGGGCTGG
AGTCTCGGGCCGCCAACTCCGCCCCCATGGCAATACATGGTGGAGTGGGC
GCTATGGTCGGTCCTGTGCCGGGTGGCGTGCCTTTCCCAGGTCCGGTGGC
AGGAGGCGGCGTCGTGGGTCACGGCGGTCAGCAAGCGGTCAAGGACGCAC
GCAAGTCCGAAGCCAATTTTTGGGGGCAGAGAACCAACAAGCTGTATTGG
TGCATTCGCGGACGGCGGGGAGTGGAGATCGGGAACGAAGACGACCTCCA
GAACGCGCTCGGCAGCCAAGTATGCGTCAACGCCCGCATATTTTCGGTGT
TTCGGTCGTTGTCCGGCATCAACATTACTTCCTTCGCGCCTGTGGGCAAC
GCCGCCTCCATTTCGGTCGAGGACCAGTTCGACCTTGCTTGCAGTTCAGT
GATGACACTGCTCACATATGGCCTCCGGGGTGACGACATCGGGGCCGACG
CTCGGTGTGACGCTCGACTGGCGCCGCTGGGGGCGGCCATGGACGTCGCG
CGGAAAGGTTTCCGGGCTGAACTTCGGCCGCTCCAGGACCTCCTGTCACA
ACAGGATAAACGCGCGTCGATCGCGTCGATTCCGACGAAAGATTTCCGGG
CGTGGGGGGAGGCCCTTGCGTTGTGGATTTTTCGTTTTTCCGCCCTTTCA
CACCCGCCCGAGTCGTTCGACGAATTcCCCCCACCGCCTGTGCCGGAGTT
TGCGGCAGTTCGAGAGTTCGTCAAAACTGGCGCTACCTGGTTCCACATGT
TCGCGGGCAGCGCACGTGCAGGGGGGAGGGAGCGACGCCGCGGGCGACAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1196:55115..56714+

>mRNA_P-littoralis_Contig1196.9.1 ID=mRNA_P-littoralis_Contig1196.9.1|Name=mRNA_P-littoralis_Contig1196.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig1196:55115..56714+ (Pylaiella littoralis U1_48)
ATGGCAATACATGGTGGAGTGGGCGCTATGGTCGGTCCTGTGCCGGGTGG
CGTGCCTTTCCCAGGTCCGGTGGCAGGAGGCGGCGTCGTGGGTCACGGCG
GTCAGCAAGCGGTCAAGGACGCACGCAAGTCCGAAGCCAATTTTTGGGGG
CAGAGAACCAACAAGCTGTATTGGTGCATTCGCGGACGGCGGGGAGTGGA
GATCGGGAACGAAGACGACCTCCAGAACGCGCTCGGCAGCCAAGTATGCG
TCAACGCCCGCATATTTTCGGTGTTTCGGTCGTTGTCCGGCATCAACATT
ACTTCCTTCGCGCCTGTGGGCAACGCCGCCTCCATTTCGGTCGAGGACCA
GTTCGACCTTGCTTGCAGTTCAGTGATGACACTGCTCACATATGGCCTCC
GGGGTGACGACATCGGGGCCGACGCTCGGTGTGACGCTCGACTGGCGCCG
CTGGGGGCGGCCATGGACGTCGCGCGGAAAGGTTTCCGGGCTGAACTTCG
GCCGCTCCAGGACCTCCTGTCACAACAGGATAAACGCGCGTCGATCGCGT
CGATTCCGACGAAAGATTTCCGGGCGTGGGGGGAGGCCCTTGCGTTGTGG
ATTTTTCGTTTTTCCGCCCTTTCACACCCGCCCGAGTCGTTCGACGAATT
cCCCCCACCGCCTGTGCCGGAGTTTGCGGCAGTTCGAGAGTTCGTCAAAA
CTGGCGCTACCTGGTTCCACATGTTCGCGGGCAGCGCACGTGCAGGGGGG
AGGGAGCGACGCCGCGGGCGACAT
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