mRNA_P-littoralis_Contig776.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.51.1
Unique NamemRNA_P-littoralis_Contig776.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig776.51.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 8.580e-28
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 2 
Query:    2 DHLLQDNSAASTRLGHVIYHLCKNQLHPKGTVIVSTPAPFYAHASKVAGYLQQPGVGLVVEDSGIIVEYGSRGGGLTAQHKKKYIPGGV 268
            DHLLQ+N +A   +  ++YH+CK  LHP+GTV+VS P P Y H   +  +LQQPG+G+VVED G++VEYGSRGGGLTA+ KKK+I G +
Sbjct:  151 DHLLQENPSAQVHMKGLLYHVCKELLHPEGTVLVSLPVPIYKHQRCIVEHLQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGAL 239
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BLAST of mRNA_P-littoralis_Contig776.51.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.280e-27
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 2 
Query:    2 DHLLQDNSAASTRLGHVIYHLCKNQLHPKGTVIVSTPAPFYAHASKVAGYLQQPGVGLVVEDSGIIVEYGSRGGGLTAQHKKKYIPGGV 268
            DHLLQ+N +A   +  ++YH+CK  LHP+GTV+VS P P Y H   +  +LQQPG+G+VVED G++VEYGSRGGGLTA+ KKK+I G +
Sbjct:  652 DHLLQENPSAQVHMKGLLYHVCKELLHPEGTVLVSLPVPIYKHHRCIVEHLQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGAL 740
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ29_ECTSI8.580e-2857.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE1.280e-2757.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:129502..130042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size272
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.9817874-CDS-P-littoralis_Contig776:129503..1296271680791598.9817874-CDS-P-littoralis_Contig776:129503..129627Pylaiella littoralis U1_48CDSP-littoralis_Contig776 129504..129627 -
1680791598.9939692-CDS-P-littoralis_Contig776:129896..1300421680791598.9939692-CDS-P-littoralis_Contig776:129896..130042Pylaiella littoralis U1_48CDSP-littoralis_Contig776 129897..130042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.51.1prot_P-littoralis_Contig776.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 129504..130042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.51.1

>prot_P-littoralis_Contig776.51.1 ID=prot_P-littoralis_Contig776.51.1|Name=mRNA_P-littoralis_Contig776.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
RPSTSGQLSCLYPPGPRHLPPLQESTSPQRNRHRFYASPVLRACIQSSRL
STAAWGRSRGRRLGDHCGVRFSGRGAHCAAQEEVHPRWGR
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mRNA from alignment at P-littoralis_Contig776:129502..130042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.51.1 ID=mRNA_P-littoralis_Contig776.51.1|Name=mRNA_P-littoralis_Contig776.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=541bp|location=Sequence derived from alignment at P-littoralis_Contig776:129502..130042- (Pylaiella littoralis U1_48)
AGACCATCTACTTCAGGACAACTCAGCTGCCTCTACCCGCCTGGGCCACG
TCATCTACCACCTTTGCAAGAATCAACTTCACCCCAAAGGAACCGTCATC
GTTTCTACGCCAGCCCCGTTCTACGCGCATGCATCCAAAGTAGCCGGTGC
GTGCGCCGCCTGGTTATCCGCCTCTTCCTCCATGGATGGTGCATGTGTAG
TCATCCACATAATTGGTGTGTTACAACACGGGCGCGTGCCTAACGTTGGT
GTGGTGGAAACAGCCAAAATAATACGAAACTTAACGCCTTGCTTGCTTGT
ACTTCGAGGTTTTCATGCGCCCAGCGTATATGAACTCTGCTTCCATGCCT
TGTATCCCGTCCTCTTACATGTTGCTTTGCCTCCATGCCTCGTACAATTC
TCTTGTGACGTGCAGGCTATCTACAGCAGCCTGGGGTAGGTCTCGTGGTC
GAAGACTCGGGGATCATTGTGGAGTACGGTTCTCGGGGAGGGGGGCTCAC
TGCGCAGCACAAGAAGAAGTACATCCCCGGTGGGGTCGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:129502..130042-

>mRNA_P-littoralis_Contig776.51.1 ID=mRNA_P-littoralis_Contig776.51.1|Name=mRNA_P-littoralis_Contig776.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig776:129502..130042- (Pylaiella littoralis U1_48)
AGACCATCTACTTCAGGACAACTCAGCTGCCTCTACCCGCCTGGGCCACG
TCATCTACCACCTTTGCAAGAATCAACTTCACCCCAAAGGAACCGTCATC
GTTTCTACGCCAGCCCCGTTCTACGCGCATGCATCCAAAGTAGCCGGCTA
TCTACAGCAGCCTGGGGTAGGTCTCGTGGTCGAAGACTCGGGGATCATTG
TGGAGTACGGTTCTCGGGGAGGGGGGCTCACTGCGCAGCACAAGAAGAAG
TACATCCCCGGTGGGGTCGA
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