mRNA_P-littoralis_Contig776.48.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.48.1
Unique NamemRNA_P-littoralis_Contig776.48.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:124493..124950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.9367268-CDS-P-littoralis_Contig776:124492..1245741680791598.9367268-CDS-P-littoralis_Contig776:124492..124574Pylaiella littoralis U1_48CDSP-littoralis_Contig776 124493..124574 +
1680791598.9508204-CDS-P-littoralis_Contig776:124844..1249481680791598.9508204-CDS-P-littoralis_Contig776:124844..124948Pylaiella littoralis U1_48CDSP-littoralis_Contig776 124845..124948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.48.1prot_P-littoralis_Contig776.48.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 124493..124948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.48.1

>prot_P-littoralis_Contig776.48.1 ID=prot_P-littoralis_Contig776.48.1|Name=mRNA_P-littoralis_Contig776.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
AVINSCHFVFRGCFLGFPKIFINDKWADVNIMEAAAGEMDDRNGWSLRDS
SGWRGDFGVRCG
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mRNA from alignment at P-littoralis_Contig776:124493..124950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.48.1 ID=mRNA_P-littoralis_Contig776.48.1|Name=mRNA_P-littoralis_Contig776.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=458bp|location=Sequence derived from alignment at P-littoralis_Contig776:124493..124950+ (Pylaiella littoralis U1_48)
GCCGTCATCAACAGCTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTT
CCCAAAGATATTCATCAACGACAAGTGGGCAGGTATGTATGGGGAGGAAG
CCGTAAGGATTGACATTATGCAACACACGTGCAAACACAGCGCCGGTGTC
GTCCGTTTTGTTGAAGATGGAGCATGTCGGGAGCTCCTGATTTCAATTCG
GGGCATTTTCCTTTCTGTAATCCGGCGCTTTTGTTGCTGGCATGTTGTCC
CATAACTATGTTCAAAGGCGTCCCTGTGCATCCCTTTTTTTTTGCCCCTA
ACTAATGTCGTACGTTCATGCTTCGTAATTGTTTTCTGTATTTTGGCCAC
AGATGTCAACATCATGGAGGCCGCCGCCGGCGAGATGGATGATAGGAACG
GGTGGTCGTTACGGGACAGCAGTGGCTGGCGAGGGGATTTCGGTGTCCGT
TGCGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:124493..124950+

>mRNA_P-littoralis_Contig776.48.1 ID=mRNA_P-littoralis_Contig776.48.1|Name=mRNA_P-littoralis_Contig776.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig776:124493..124950+ (Pylaiella littoralis U1_48)
GCCGTCATCAACAGCTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTT
CCCAAAGATATTCATCAACGACAAGTGGGCAGATGTCAACATCATGGAGG
CCGCCGCCGGCGAGATGGATGATAGGAACGGGTGGTCGTTACGGGACAGC
AGTGGCTGGCGAGGGGATTTCGGTGTCCGTTGCGGA
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