mRNA_P-littoralis_Contig776.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.45.1
Unique NamemRNA_P-littoralis_Contig776.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:120504..121293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size209
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.8640194-CDS-P-littoralis_Contig776:120503..1206191680791598.8640194-CDS-P-littoralis_Contig776:120503..120619Pylaiella littoralis U1_48CDSP-littoralis_Contig776 120504..120619 -
1680791598.8878026-CDS-P-littoralis_Contig776:121201..1212771680791598.8878026-CDS-P-littoralis_Contig776:121201..121277Pylaiella littoralis U1_48CDSP-littoralis_Contig776 121202..121277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.902488-UTR-P-littoralis_Contig776:121277..1212931680791598.902488-UTR-P-littoralis_Contig776:121277..121293Pylaiella littoralis U1_48UTRP-littoralis_Contig776 121278..121293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.45.1prot_P-littoralis_Contig776.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 120504..121277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.45.1

>prot_P-littoralis_Contig776.45.1 ID=prot_P-littoralis_Contig776.45.1|Name=mRNA_P-littoralis_Contig776.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
MEERGGSALGESSSSRMANRMTGLSSGNTSLISPAGTGATTAVHPGAGGG
STGATPYTEAGGDT
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mRNA from alignment at P-littoralis_Contig776:120504..121293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.45.1 ID=mRNA_P-littoralis_Contig776.45.1|Name=mRNA_P-littoralis_Contig776.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=790bp|location=Sequence derived from alignment at P-littoralis_Contig776:120504..121293- (Pylaiella littoralis U1_48)
AGGCCAGCGCAGGGCCATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGT
CATCGTCATCCAGGATGGCCAATAGAATGACAGGGCTTAGCAGTGAGTGT
TTTGCGGTCATGTTCGAGATTACTGCTGTTGTCATGTTGCACTTATATAC
CCCTTTTGCTCTCTTTTCGTGTACAGCAGTATCACCTATATGTTGGAGGA
CATGAGCACCACCACTGCAAAGCAAACCACAGCAACAACCATTCATATCG
TCGGTTACACAGGGCGAAGTCCGAGGCCGGTCGGCAAGAATAATGTATAT
CATATGCTCCCTGTAATTACCCGAAGGTGTAGTTTTATCGTGAACTTCGG
GACCTAACAGGTGCAGGACGTGACTGCGGTATAGGTCGTATACGATGCGA
AAGTGCCCCGAACGACATATTGATAAGTCGAAGCGTAACTCGAGGTGGCT
GGAGGTGGAGGGTTAGCATATTTTGGGGTACAGACATGACAACAGTTACA
TCCGTAGTACACGCAGGGATGTCCCGAATTGCTGGGTACGTGTGGAGCAC
TGCCTCGTCCTCCACTAACTGCCAAGTTCCCCCCTACACAGACTCGTCAA
GTTGGGTGACTTAGTTTCCTTCTCATGATGAATTGTCTCCGATTTTCCAC
TCCCGAATGCTGGCTTCGTCGAAGGTGGAAATACGAGTCTCATTTCCCCT
GCTGGGACTGGGGCCACTACTGCTGTACACCCTGGTGCTGGTGGCGGCAG
CACCGGGGCTACACCGTATACCGAAGCCGGTGGCGACACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:120504..121293-

>mRNA_P-littoralis_Contig776.45.1 ID=mRNA_P-littoralis_Contig776.45.1|Name=mRNA_P-littoralis_Contig776.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig776:120504..121293- (Pylaiella littoralis U1_48)
ATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGTCATCGTCATCCAGGAT
GGCCAATAGAATGACAGGGCTTAGCAGTGGAAATACGAGTCTCATTTCCC
CTGCTGGGACTGGGGCCACTACTGCTGTACACCCTGGTGCTGGTGGCGGC
AGCACCGGGGCTACACCGTATACCGAAGCCGGTGGCGACACC
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