mRNA_P-littoralis_Contig776.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.43.1
Unique NamemRNA_P-littoralis_Contig776.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:118536..119620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size538
Hectar predicted targeting categoryother localisation
Exons3
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.807305-CDS-P-littoralis_Contig776:118535..1186591680791598.807305-CDS-P-littoralis_Contig776:118535..118659Pylaiella littoralis U1_48CDSP-littoralis_Contig776 118536..118659 -
1680791598.8193805-CDS-P-littoralis_Contig776:118919..1192741680791598.8193805-CDS-P-littoralis_Contig776:118919..119274Pylaiella littoralis U1_48CDSP-littoralis_Contig776 118920..119274 -
1680791598.8321452-CDS-P-littoralis_Contig776:119562..1196201680791598.8321452-CDS-P-littoralis_Contig776:119562..119620Pylaiella littoralis U1_48CDSP-littoralis_Contig776 119563..119620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.43.1prot_P-littoralis_Contig776.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 118536..119620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.43.1

>prot_P-littoralis_Contig776.43.1 ID=prot_P-littoralis_Contig776.43.1|Name=mRNA_P-littoralis_Contig776.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
YYQQATGSGSFSCGESYGQDTFCDFCYGRDRRDYSHIAARPCRRCVPHTI
NVHRSHNERPSSWCHQQPDRRQPQGDGAPHQQYPTASRQHYGQEASGDKR
LVVQASSRGCPRADSGRQSQAGALAILIAQVSYLFVFGSDKRANRERQSS
PLDLRSRKRKDEHNSPNTPADARRNRSKD
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mRNA from alignment at P-littoralis_Contig776:118536..119620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.43.1 ID=mRNA_P-littoralis_Contig776.43.1|Name=mRNA_P-littoralis_Contig776.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1085bp|location=Sequence derived from alignment at P-littoralis_Contig776:118536..119620- (Pylaiella littoralis U1_48)
TACTATCAACAAGCAACTGGAAGCGGCAGCTTCTCGTGCGGAGAAAGTTA
TGGACAAGGTGAATGTTTAAACCGCGTCTATTTTAATCGTGACGTCGCCT
CTTTCTGGCACGTGTGATGAAGAAAAGCAAGCATGCCTACCCATATTACC
AGATGGCCGGCAAGTATAGGAAGGAAGTCATCTTTTTTTTGAAACACGGT
TCGGTTTACTGCTCTAGTCGTACCATCAAGCGCCGGCGTGGGAGGGTTGT
TTCTGTGCTCCTCTGTCGACATATGCCATGTGCGACGAACCGCTAATTCT
AATCGGGACGTTTCCTCCCGTTGTGTGTCTTCTATCGTTTCGGAAGATAC
CTTCTGTGACTTCTGCTATGGGAGAGACCGGCGGGACTACAGCCACATCG
CAGCCCGACCTTGCCGGCGATGTGTCCCCCACACCATCAATGTCCATAGA
TCCCATAACGAACGGCCCTCTTCTTGGTGCCATCAACAGCCTGATCGTCG
GCAACCTCAAGGCGATGGTGCCCCTCATCAACAATACCCTACCGCAAGTC
GACAACATTATGGACAAGAAGCTAGCGGCGATAAAAGACTCGTTGTTCAA
GCGTCTTCGCGAGGATGTCCTCGAGCAGACTCGGGACGGCAGTCGCAAGC
CGGCGCGCTCGCCATCCTTATCGCCCAAGTCTCTTACCTTTTTGTTTTTG
GGTAAGGTTTTATCTGCGAATTTCATTTACGACGGCGTTGTAAATGTACT
TCGTACGTAATCACTGTCGACAAGGTTACTGTTCGTGATGTATTGCATAT
GCCTGCAAAGATAATAAATAAGTTGTGCAGGAGGGGTATTACGGTGCAGT
TTTTTCGTGTAACAATTGACGCGTGCACCCAGCCTGTGTTTCAGGCTTCG
AACTATATTTTATTGCTTGTTGATATCGCGTTCGGGCGTTCACCTGTGCG
TCATAAATAAGGTCCGACAAACGTGCAAACCGCGAACGCCAGTCGTCCCC
ACTCGACCTGAGGAGCCGCAAACGGAAGGACGAACACAACTCTCCGAACA
CGCCGGCCGACGCGAGGAGGAATCGCAGTAAAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:118536..119620-

>mRNA_P-littoralis_Contig776.43.1 ID=mRNA_P-littoralis_Contig776.43.1|Name=mRNA_P-littoralis_Contig776.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig776:118536..119620- (Pylaiella littoralis U1_48)
TACTATCAACAAGCAACTGGAAGCGGCAGCTTCTCGTGCGGAGAAAGTTA
TGGACAAGATACCTTCTGTGACTTCTGCTATGGGAGAGACCGGCGGGACT
ACAGCCACATCGCAGCCCGACCTTGCCGGCGATGTGTCCCCCACACCATC
AATGTCCATAGATCCCATAACGAACGGCCCTCTTCTTGGTGCCATCAACA
GCCTGATCGTCGGCAACCTCAAGGCGATGGTGCCCCTCATCAACAATACC
CTACCGCAAGTCGACAACATTATGGACAAGAAGCTAGCGGCGATAAAAGA
CTCGTTGTTCAAGCGTCTTCGCGAGGATGTCCTCGAGCAGACTCGGGACG
GCAGTCGCAAGCCGGCGCGCTCGCCATCCTTATCGCCCAAGTCTCTTACC
TTTTTGTTTTTGGGTCCGACAAACGTGCAAACCGCGAACGCCAGTCGTCC
CCACTCGACCTGAGGAGCCGCAAACGGAAGGACGAACACAACTCTCCGAA
CACGCCGGCCGACGCGAGGAGGAATCGCAGTAAAGAT
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