mRNA_P-littoralis_Contig775.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig775.3.1
Unique NamemRNA_P-littoralis_Contig775.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig775.3.1 vs. uniprot
Match: A0A6H5KH47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH47_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 6.830e-46
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:  313 METRLWTFNDIKDATRRHEDYRNSDNPIRHYFYGVALEMSGQTESATEKYLAFRLEAQRRFGGLESAAAQYVQEGEALSRSGDAKSSDHYANMARILRGPEPGGS-TSRPCVVM 651
            ME RLWTF+DIKDA+RRHE+YR+SDNPIRHYFYGVAL+MSGQ E ATEKY AFR EAQR FG +ESAAA Y   GE L+  GD +SSDHYANMARILRG  PG +  S+ CV+M
Sbjct:    1 MEARLWTFDDIKDASRRHEEYRHSDNPIRHYFYGVALDMSGQEEGATEKYDAFRAEAQRLFGDVESAAAHYA--GEGLALRGDERSSDHYANMARILRGSVPGAAGRSKTCVLM 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig775.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH47_9PHAE6.830e-4671.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig775contigP-littoralis_Contig775:8360..9320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size961
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.5133774-UTR-P-littoralis_Contig775:8359..86711680791597.5133774-UTR-P-littoralis_Contig775:8359..8671Pylaiella littoralis U1_48UTRP-littoralis_Contig775 8360..8671 -
1680791597.538832-UTR-P-littoralis_Contig775:9193..93201680791597.538832-UTR-P-littoralis_Contig775:9193..9320Pylaiella littoralis U1_48UTRP-littoralis_Contig775 9194..9320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.5260658-CDS-P-littoralis_Contig775:8671..91931680791597.5260658-CDS-P-littoralis_Contig775:8671..9193Pylaiella littoralis U1_48CDSP-littoralis_Contig775 8672..9193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig775.3.1prot_P-littoralis_Contig775.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig775 8672..9193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig775.3.1

>prot_P-littoralis_Contig775.3.1 ID=prot_P-littoralis_Contig775.3.1|Name=mRNA_P-littoralis_Contig775.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MLESQLVLTCSRCRVLIDELEICHSGHADLSTCRACVAGETTSGKEPAQQ
IGVDERKGRGIAWKPAFGPSTISRTRLGDTKTTATQTIPFVITSTAWLWR
CRARPRAQPKNTSRSGWRRSEGLEALKAQRRNTYRKGKRSVVAATRRAQI
TMRIWHGFCEVPSREVVLPGRAS*
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mRNA from alignment at P-littoralis_Contig775:8360..9320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig775.3.1 ID=mRNA_P-littoralis_Contig775.3.1|Name=mRNA_P-littoralis_Contig775.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=961bp|location=Sequence derived from alignment at P-littoralis_Contig775:8360..9320- (Pylaiella littoralis U1_48)
GTCGGTTTCAAAGATCACTAAGCAGCACACCAGAGAGAGAAAGACCTTTG
GTGCCCGCAGTTTTCCTGTATCGATATGATAGCACCGTAAGCCTTACGTG
AAATGAGTACGAGAGGACCCACACCGCATGTTGGAATCACAGCTTGTACT
TACTTGTAGCCGTTGCCGAGTTTTGATTGATGAGCTGGAGATTTGTCACT
CTGGACACGCCGACCTCTCGACCTGCCGCGCTTGCGTAGCAGGAGAAACG
ACCAGCGGCAAAGAACCAGCGCAGCAGATAGGTGTTGACGAGAGGAAGGG
CCGGGGAATAGCATGGAAACCCGCCTTTGGACCTTCAACGATATCAAGGA
CGCGACTAGGAGACACGAAGACTACCGCAACTCAGACAATCCCATTCGTC
ATTACTTCTACGGCGTGGCTTTGGAGATGTCGGGCCAGACCGAGAGCGCA
ACCGAAAAATACCTCGCGTTCCGGCTGGAGGCGCAGCGAAGGTTTGGAGG
CCTTGAAAGCGCAGCGGCGCAATACGTACAGGAAGGGGAAGCGCTCAGTC
GTAGCGGCGACGCGAAGAGCTCAGATCACTATGCGAATATGGCACGGATT
TTGCGAGGTCCCGAGCCGGGAGGTAGTACTTCCAGGCCGTGCGTCGTAAT
GTAGTGTAAAGCAGTCTACTGAACTTCCGTGTGGAGGATCGCGAGTTGTA
GAGCGGGTTGCTGTAGGATAACTGACTGAGAGCTCCGCGTGGGTTGTGAC
TGTATGGGTACAGTAGTGAAATCATGCCATGGCAGTGTGCTCGTGCAAGA
ATATGTGTGCTGCTGCCGTGGGAATTATTGTGGGTGTTCCCGTTTCAAGC
CGTGAACTGTTTACGGTGTGTGTGTTGTGTGTGTGTGTGTTGTCATACCT
TTCATTGGACGCCCCTCTACACCTTTCGGGTAGGTAGACGCTCCAACCGG
GGTCACACAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig775:8360..9320-

>mRNA_P-littoralis_Contig775.3.1 ID=mRNA_P-littoralis_Contig775.3.1|Name=mRNA_P-littoralis_Contig775.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig775:8360..9320- (Pylaiella littoralis U1_48)
ATGTTGGAATCACAGCTTGTACTTACTTGTAGCCGTTGCCGAGTTTTGAT
TGATGAGCTGGAGATTTGTCACTCTGGACACGCCGACCTCTCGACCTGCC
GCGCTTGCGTAGCAGGAGAAACGACCAGCGGCAAAGAACCAGCGCAGCAG
ATAGGTGTTGACGAGAGGAAGGGCCGGGGAATAGCATGGAAACCCGCCTT
TGGACCTTCAACGATATCAAGGACGCGACTAGGAGACACGAAGACTACCG
CAACTCAGACAATCCCATTCGTCATTACTTCTACGGCGTGGCTTTGGAGA
TGTCGGGCCAGACCGAGAGCGCAACCGAAAAATACCTCGCGTTCCGGCTG
GAGGCGCAGCGAAGGTTTGGAGGCCTTGAAAGCGCAGCGGCGCAATACGT
ACAGGAAGGGGAAGCGCTCAGTCGTAGCGGCGACGCGAAGAGCTCAGATC
ACTATGCGAATATGGCACGGATTTTGCGAGGTCCCGAGCCGGGAGGTAGT
ACTTCCAGGCCGTGCGTCGTAA
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