mRNA_P-littoralis_Contig775.31.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JQ01_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ01_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.240e-21 Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = -1
Query: 317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
+G LLKV AIGS+ + F Q+ D+ M V LTDVSV E L+FNL ST VSL+QR++ D+ GVTL NGL FARE K++ A+A R+P+DPS I+ + A+PA
Sbjct: 303 DGRLLKVEAIGSINLIFFQEGDNGVPTTMYVKLTDVSVVESLSFNLFSTHAVSLRQRIIHDERGVTLRNGLLFAREEKASAAHAMRMPYDPSAIVVDSAALPA 405
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5J8D5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.260e-21 Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = -1
Query: 206 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPAVPERTENKSGFPPAAFGSVVPSELSAGVGDMTEILSV 619
+G LL+V AIGS+ ++F Q ++ M V LTDVSV E L+FNL ST VSLKQ+++ DK G TL+NGL FARE K++ AYA R+P+DPS I + A+PA ++ PA + PS+ + +L V
Sbjct: 320 DGRLLEVQAIGSINLSFFQVDENGEQTTMCVKLTDVSVVESLSFNLFSTHAVSLKQQILYDKRGATLQNGLLFAREDKASAAYAIRLPYDPSATIVDPAALPAFVTAPDSA----PAVGSTRSPSQKGGSAESLVSVLRV 455
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5L7B6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B6_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.400e-21 Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = -1
Query: 242 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPS-TIIQNAM-----------PAVPERTENKSG-----------FPPAAFGSVVPSELS 619
+G LL+V AIGS+ ++F Q+ ++ G M V LTD+SV E L+FNL S VSLKQ ++ D+ G TL+NGL FA+E K++ AY R+P+DPS T++ +A PAV ++ G FPPA SV+PS S
Sbjct: 276 DGRLLEVQAIGSINLSFFQEDENGGKTTMCVKLTDLSVVESLSFNLFSMHAVSLKQHILHDERGATLQNGLLFAKEEKASAAYVMRLPYDPSATVVDSAALPAFVTAPDSAPAVGSACFSQKGGSAESWVSLLCFPPAGDASVIPSSES 424
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JSL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL0_9PHAE) HSP 1 Score: 100 bits (249), Expect = 5.630e-21 Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = -1
Query: 206 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPAVPERTENKSGFPPAAFGSVVPSELSAGVGDMTEILSV 619
+G LL+V AIGS+ ++F Q+ ++ M V LTDVSV E L+FNL ST VSLKQ ++ DK G TL+NGL FARE K++ AYA R+P+DPS + A+PA ++ PA + PS+ + + +L +
Sbjct: 18 DGRLLEVQAIGSINLSFFQEDENGEQTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDKRGATLQNGLLFAREEKASAAYAIRLPYDPSATFVDPAALPAFVTAPDSA----PAVGSARFPSQKGSSAKSLVSMLRI 153
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JPK8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK8_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.480e-20 Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = -1
Query: 317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
+G LL+V AIGS+ ++F Q+ ++ M V LTDVSV E L+FNL ST VSLKQ ++ D+ G TL+NGL FARE K++ AYA R+P+DPS I + A+PA
Sbjct: 391 DGRLLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDERGATLQNGLLFAREEKASAAYAMRLPYDPSATIVDPAALPA 493
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5KR35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR35_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.130e-20 Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = -1
Query: 317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
+G LL+V AIGS+ ++F Q+ ++ G M V LTDVSV E L+FNL ST VSLKQ ++ D G TL+NGL ARE K++ AYA R+P+DPS I + A+PA
Sbjct: 1011 DGRLLEVQAIGSINLSFFQEDENGGKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDVRGATLQNGLLLAREEKASAAYAMRLPYDPSATIVDPAALPA 1113
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.910e-20 Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = -1
Query: 317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
+G LL+V AIGS+ + F Q+ ++ M V LTDVSV E L FNL ST VSLKQ ++SD G TL+NGL FARE K + AYA R+P+DPS I + A+PA
Sbjct: 495 DGRLLEVQAIGSINLTFFQEDENGEETTMCVKLTDVSVVESLRFNLFSTHAVSLKQPILSDDRGATLQNGLLFAREEKVSAAYAMRLPYDPSATIVDPAALPA 597
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JW32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW32_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 6.480e-20 Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = -1
Query: 317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
+G LL+V A G + ++ Q+ +D G M V LTDVSV E L+FNL ST VSLKQ ++ D+ G TL+NGL FARE K++ AYA R+P+DPS I + A+PA
Sbjct: 125 DGRLLEVQASGRINLSVFQEDEDGGKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPILYDERGATLQNGLLFAREEKASAAYAMRLPYDPSATIVDPAALPA 227
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JPG0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG0_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 8.360e-20 Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = -1
Query: 317 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA 619
+G LL+V AIGS+ ++F Q+ ++ M V LTDVSV E L+FNL ST SLKQ ++ D+ G TL+NGL FARE K++ AYA R+P+DPS I A+PA
Sbjct: 18 DGRLLQVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAFSLKQPILYDERGATLQNGLLFAREEKASAAYAMRLPYDPSATIVGPAALPA 120
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Match: A0A6H5JX58_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX58_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 8.590e-20 Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = -1
Query: 251 NGHLLKVTAIGSLMVNFEQQQDDRGMALMPVMLTDVSVAEGLAFNLVSTFVVSLKQRVVSDKHGVTLENGLRFAREGKSNVAYATRVPFDPSTIIQN--AMPA---VPE--------RTENKSGFPP-----------AAFGSVVPS 619
+G LL+V AIGS+ ++F Q+ ++ M V LTDVS+ E L+FNL ST VSLKQ ++ D+ G TL+NGL FARE K++ AYA R+ +DPS I + A+PA P+ R+ ++ G PP A SVVPS
Sbjct: 18 DGRLLEVQAIGSINLSFFQEDENGEQTTMCVKLTDVSLVESLSFNLFSTHAVSLKQPILDDERGATLQNGLLFAREEKASAAYAMRLSYDPSATIVDPAALPAFVTAPDSAPTVGSTRSPSQKGCPPKSSVSMLRIHPAGSASVVPS 164 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig775.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig775.31.1 >prot_P-littoralis_Contig775.31.1 ID=prot_P-littoralis_Contig775.31.1|Name=mRNA_P-littoralis_Contig775.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp MQCHMFRFLFSDRRQKILKGGISNAIIHHPFITKHTQYLSHVPNAGTQLGback to top mRNA from alignment at P-littoralis_Contig775:120376..121102- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig775.31.1 ID=mRNA_P-littoralis_Contig775.31.1|Name=mRNA_P-littoralis_Contig775.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=727bp|location=Sequence derived from alignment at P-littoralis_Contig775:120376..121102- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig775:120376..121102- >mRNA_P-littoralis_Contig775.31.1 ID=mRNA_P-littoralis_Contig775.31.1|Name=mRNA_P-littoralis_Contig775.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig775:120376..121102- (Pylaiella littoralis U1_48)back to top |