mRNA_P-littoralis_Contig775.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig775.12.1
Unique NamemRNA_P-littoralis_Contig775.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig775.12.1 vs. uniprot
Match: D7FX78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX78_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 4.450e-7
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  718 LGINMMEFCKKFNEDTKNVVQNTPMPC 798
            LGINMMEFCKKFNE+TK++VQNTPMPC
Sbjct:   29 LGINMMEFCKKFNEETKHIVQNTPMPC 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig775.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX78_ECTSI4.450e-788.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig775contigP-littoralis_Contig775:50672..51557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size800
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.3948226-CDS-P-littoralis_Contig775:50671..510661680791597.3948226-CDS-P-littoralis_Contig775:50671..51066Pylaiella littoralis U1_48CDSP-littoralis_Contig775 50672..51066 -
1680791597.4079578-CDS-P-littoralis_Contig775:51153..512711680791597.4079578-CDS-P-littoralis_Contig775:51153..51271Pylaiella littoralis U1_48CDSP-littoralis_Contig775 51154..51271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.422459-UTR-P-littoralis_Contig775:51271..515571680791597.422459-UTR-P-littoralis_Contig775:51271..51557Pylaiella littoralis U1_48UTRP-littoralis_Contig775 51272..51557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig775.12.1prot_P-littoralis_Contig775.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig775 50672..51271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig775.12.1

>prot_P-littoralis_Contig775.12.1 ID=prot_P-littoralis_Contig775.12.1|Name=mRNA_P-littoralis_Contig775.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
MNGYNGHTGYYSVHDSHAAFVWLHRPYGSERRYDTQNHNFTCTCSTAGRR
QGQQPCPPNSNYRTEANAQQCSPSRHAVLVYNRCRCSSSRSSTLQAAALT
PATMSDAYPGVASKNKRPPAGSHRQKKHHSTAGAATQIGHAQLTQGMGVF
CTTFLVSSLNFLQNSIMLMPR
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mRNA from alignment at P-littoralis_Contig775:50672..51557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig775.12.1 ID=mRNA_P-littoralis_Contig775.12.1|Name=mRNA_P-littoralis_Contig775.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=886bp|location=Sequence derived from alignment at P-littoralis_Contig775:50672..51557- (Pylaiella littoralis U1_48)
TGCTGCCCCCCAATATTACTGTTTGCTGATGCTCAGCTGCGATTTGATCA
TATCGTGACGGGCCTGTGAGCAAGTGACAAAATCACGAAGTAGGGACCGG
CGTTGGCTGTTCGATACTCGTGTCGGACGTGTTGCTCTCGCGGTGAGCGC
GGTTCGTATTGTGTGCGCTCCCGCCCGTATCTTGGGGCACCCAAAAAGGA
ACTTGAGGTCATTTCTGTGTTCCGTGGATGATATGCTTGTCCACGTTCGT
CCCTCTAGTGTTCGTTAGTCTCAGTTCAGACAGCGTATGAATGGTTACAA
TGGTCACACGGGATATTACTCCGTACATGATTCTCACGCGGCCTTTGTGT
GGCTGCATCGTCCCTATGGATCCGAGAGAAGATATGATACGCAAAATCAC
AATTGTAGAAAGAGAGTCGCCGTGCATTTCACTACTGGACATGCGTAACA
ATAGGTAACCTTCAACAAATGGTTGAATAGCAGAATAGGAGTCACATGTA
CTTGTAGCACCGCAGGACGGCGACAAGGACAACAACCCTGCCCACCGAAC
TCGAACTATCGAACGGAAGCAAATGCTCAGCAATGTTCGCCGTCACGACA
TGCAGTCTTGGTCTACAACAGGTGCAGGTGCAGCAGCAGCAGGAGCAGCA
CCCTACAAGCGGCAGCACTAACACCAGCAACAATGTCTGATGCGTACCCA
GGAGTAGCGAGCAAGAACAAACGCCCACCCGCAGGTAGCCACCGACAGAA
AAAACACCACAGTACCGCCGGAGCGGCAACGCAAATAGGCCACGCTCAAC
TCACACAAGGCATGGGCGTGTTCTGCACCACGTTTTTGGTATCCTCGTTA
AACTTTTTGCAGAACTCCATCATGTTGATGCCCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig775:50672..51557-

>mRNA_P-littoralis_Contig775.12.1 ID=mRNA_P-littoralis_Contig775.12.1|Name=mRNA_P-littoralis_Contig775.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig775:50672..51557- (Pylaiella littoralis U1_48)
ATGAATGGTTACAATGGTCACACGGGATATTACTCCGTACATGATTCTCA
CGCGGCCTTTGTGTGGCTGCATCGTCCCTATGGATCCGAGAGAAGATATG
ATACGCAAAATCACAATTTCACATGTACTTGTAGCACCGCAGGACGGCGA
CAAGGACAACAACCCTGCCCACCGAACTCGAACTATCGAACGGAAGCAAA
TGCTCAGCAATGTTCGCCGTCACGACATGCAGTCTTGGTCTACAACAGGT
GCAGGTGCAGCAGCAGCAGGAGCAGCACCCTACAAGCGGCAGCACTAACA
CCAGCAACAATGTCTGATGCGTACCCAGGAGTAGCGAGCAAGAACAAACG
CCCACCCGCAGGTAGCCACCGACAGAAAAAACACCACAGTACCGCCGGAG
CGGCAACGCAAATAGGCCACGCTCAACTCACACAAGGCATGGGCGTGTTC
TGCACCACGTTTTTGGTATCCTCGTTAAACTTTTTGCAGAACTCCATCAT
GTTGATGCCCAGA
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