mRNA_P-littoralis_Contig774.41.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig774.41.2
Unique NamemRNA_P-littoralis_Contig774.41.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 1.230e-127
Identity = 220/281 (78.29%), Postives = 230/281 (81.85%), Query Frame = 1 
Query:    1 IAMEDEWYSGGDTAVPAAAGGXXXXXXXXXAAKSGHYGDSFTPPTSQVGGNAGQQARNIHAYRGSGASMGGYVGHGAAPAGGLQGXXXXXXXXXXXS----IIEEDDEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            + MEDEWYSG DT        XXXXXXXXX  ++  YGDSFTPP+SQ G  AGQQA     Y   GASMGG              XXXXXXXXX        I ED+EDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFG+FGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAA+GIV DL+G +GHVLG VAVAWCTISATRLFEEYL+MRRQRYLVAYPVGLLYACFVLITVY
Sbjct:   71 LTMEDEWYSGADTTDGTGXXXXXXXXXXXXQQRT-PYGDSFTPPSSQGGIMAGQQA-----YGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 5.320e-127
Identity = 220/279 (78.85%), Postives = 227/279 (81.36%), Query Frame = 1 
Query:    7 MEDEWYSGGDTAVPAAAGGXXXXXXXXXAAKSGHYGDSFTPPTSQVGGNAGQQARNIHAYRGSGASMGGYVGHGAAPAGGLQGXXXXXXXXXXX----SIIEEDDEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            MEDEWYSG DT        XXXXXXXXX      YGDSFTPP+SQ G  AGQQA     Y   GASMGG              XXXXXXXXX        I ED+EDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFG+FGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAA+GIV DL+G +GHVLG VAVAWCTISATRLFEEYL+MRRQRYLVAYPVGLLYACFVLITVY
Sbjct:   75 MEDEWYSGADT-TDGTGXXXXXXXXXXXXXXXTTYGDSFTPPSSQGGIMAGQQA-----YGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGVGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 252 bits (644), Expect = 5.580e-81
Identity = 131/239 (54.81%), Postives = 162/239 (67.78%), Query Frame = 1 
Query:  115 DSFTPPTSQVGGNAGQQARNIHAYRGSGASMGGYVGHGAAPAGGLQGXXXXXXXXXXXSIIEEDDEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            DSFTPP S  G            Y G+G+       + + P G   G                    ++NEPPLLEELGINFEHIW+KT AV++PT++I+  YLD+TDLAGPLVF L FG CLLL GK HFGYIYGFG FGC A ++VLNL+G++PID W+TTSVLGYCLLPV+ L+A+GI  DL G VG  L   AVAW   +AT+LFE+YLDMR QR+L+AYP+GLLY CFVL+ ++
Sbjct:    6 DSFTPPPSGGG------------YSGAGS-------YASDPIGLTHGYGIGQPVGAVGGXXXXXXXQFDNEPPLLEELGINFEHIWAKTRAVLVPTRRIESAYLDETDLAGPLVFALVFGTCLLLAGKLHFGYIYGFGAFGCGALSLVLNLMGDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 227 bits (578), Expect = 1.220e-71
Identity = 104/173 (60.12%), Postives = 133/173 (76.88%), Query Frame = 1 
Query:  313 DYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            D+ NEPPLLEELGINF+HIW KTLAV++P K++    + D D+AGPL FCL  G CLLLTGK HFGYIYGFGL GC+   ++LNL+ ++ ID+++T S+LGYCLLP++ LAA  IV +L+G +G     V + WCT++ATR  E  LDMR QRYLVAYP+ LLY+CF LITV+
Sbjct:    7 DFSNEPPLLEELGINFDHIWQKTLAVLVPVKELKQEIMVDADMAGPLFFCLLLGFCLLLTGKVHFGYIYGFGLIGCLGMYIILNLMSDRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A8K1CDX0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDX0_PYTOL)

HSP 1 Score: 224 bits (570), Expect = 8.120e-70
Identity = 108/179 (60.34%), Postives = 139/179 (77.65%), Query Frame = 1 
Query:  304 DDEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQ--GAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            DDE+YENEPPLLEELGINF+HIW KT +V+LPTK+I+ + LDD DLAGPLV+C  FG+CLLL  K HFGYIYGFG+  C+   +++NL+  ++ ID+++  SVLGYCLLP+IGLAA+ I   +Q  G  G  L  VA+ W T +A+R FE+ L M  Q+YL+AYPVGL+YACFVLITV+
Sbjct:   44 DDEEYENEPPLLEELGINFDHIWLKTQSVLLPTKQINEHILDDADLAGPLVYCFVFGMCLLLAAKVHFGYIYGFGVLSCVFMYLLMNLLSPDRAIDIYRVCSVLGYCLLPIIGLAAINIFVSVQKLGLAGFALATVAILWSTHTASRFFEKALYMSEQKYLIAYPVGLVYACFVLITVF 222
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: W7U1N9_9STRA (Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N9_9STRA)

HSP 1 Score: 220 bits (560), Expect = 7.310e-68
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 1 
Query:  307 DEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            +EDY  EPPLL ELGINF+HIW KT  V++P   +D + +DD DLAGPL F L FG+ LL+TGK HFGYIYGFG+ GCIA  +VLNL+  K ID+W+  S+LGY LLPVIGLA LGI   L+G VG  L  + +AW T ++TRLFE+ L+M +QRYLVAYPV L+YA FVLITV+
Sbjct:   80 EEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A7S2TR42_9EUKA (Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA)

HSP 1 Score: 216 bits (549), Expect = 3.540e-67
Identity = 107/175 (61.14%), Postives = 130/175 (74.29%), Query Frame = 1 
Query:  313 DYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGE--KPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            DY+NEPPLLEELGINF+HI  KTLAV++PTK  D   + D D+AGPLVFCL  G CL+L  K HFGYIYGFGL GC+    +LNL+ +  K ID+++T S+LGYCLLP++GLAAL  V  L+G +G  L    V WCTI+ATR  E  L MR QRYLVAYP+ LLY+CF LITV+
Sbjct:   10 DYDNEPPLLEELGINFDHIMQKTLAVLIPTKTPDHEIMIDADMAGPLVFCLLLGFCLMLRLKMHFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: K3WQV6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQV6_GLOUD)

HSP 1 Score: 218 bits (555), Expect = 3.670e-67
Identity = 107/184 (58.15%), Postives = 139/184 (75.54%), Query Frame = 1 
Query:  289 SIIEEDDEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQ--GAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            S  + DDEDY NEPPLLEELGINFEHIW KT +V+LP K+I+ + LDD DLAGPLVFC  FG+CLLL  K HFGYIYGFG+  C+   +++NL+  E+ ID+++  SVLGYCLLP+IGLAA+ IV  ++  G VG  L  + + W T +A+R FE+ L M  Q+YL+AYP+ L+Y+CFVLITV+
Sbjct:   67 SYADPDDEDYSNEPPLLEELGINFEHIWLKTQSVLLPMKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVISCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSVKDLGLVGFGLASLCILWSTHTASRFFEKALYMTEQKYLIAYPIVLVYSCFVLITVF 250
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A1V9YZW9_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZW9_9STRA)

HSP 1 Score: 220 bits (560), Expect = 7.110e-67
Identity = 108/178 (60.67%), Postives = 140/178 (78.65%), Query Frame = 1 
Query:  307 DEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGE-KPIDLWKTTSVLGYCLLPVIGLAALGIVQDLQGA--VGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            +EDY+NEPPLLEELG+NF HIW+KTL+V+LPTK+I+ N LDDTDLAGPLVFC  FG CLLL+GK HFGYIYGFGLFG      ++NL+   + ID+++  SVLGYCLLP+I LAA+ IV  ++G   VG +L +++V W T +ATR FE+ L M  QR+L+AYP  ++Y+CFVLITV+
Sbjct:  152 EEDYDNEPPLLEELGVNFNHIWTKTLSVLLPTKQINENILDDTDLAGPLVFCFIFGTCLLLSGKIHFGYIYGFGLFGWAFMWAIMNLLSPTRTIDVYRVCSVLGYCLLPIILLAAINIVISIKGLNYVGFLLAMLSVIWSTHTATRFFEKALHMSDQRFLIAYPTAMVYSCFVLITVF 329
[Close]
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Match: A0A2D4BQN0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQN0_PYTIN)

HSP 1 Score: 216 bits (551), Expect = 1.670e-66
Identity = 106/183 (57.92%), Postives = 140/183 (76.50%), Query Frame = 1 
Query:  295 IEEDDEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAALGI---VQDLQGAVGHVLGLVAVAWCTISATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 831
            ++ DDEDY NEPPLLEELGINFEHIW+KT +V+LPTK+I+ + LDD DLAGPLV+C  FG CLLL  K HFGYIYGFG+  C+   +++ L+  E+ ID+++  SVLGYCLLP+I LAA+ I   V+DL G +G  +  + + W T +A+R FE+ L M  Q+YL+AYPVGL+Y+CFVLITV+
Sbjct:   73 VDPDDEDYXNEPPLLEELGINFEHIWTKTQSVLLPTKQINEHILDDADLAGPLVYCFVFGFCLLLAAKVHFGYIYGFGVLSCLFMYLLMXLLSPERSIDIYRVCSVLGYCLLPIIALAAVNIFISVKDL-GLIGFAMASLCILWSTHTASRFFEKALYMSEQKYLIAYPVGLVYSCFVLITVF 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig774.41.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ4_ECTSI1.230e-12778.29Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JG11_9PHAE5.320e-12778.85Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z6H4_9STRA5.580e-8154.81Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S0DM30_9EUKA1.220e-7160.12Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]
A0A8K1CDX0_PYTOL8.120e-7060.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7U1N9_9STRA7.310e-6861.71Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S2TR42_9EUKA3.540e-6761.14Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641... [more]
K3WQV6_GLOUD3.670e-6758.15Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9YZW9_9STRA7.110e-6760.67Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A2D4BQN0_PYTIN1.670e-6657.92Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig774contigP-littoralis_Contig774:114704..122173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRQ4
Preferred nameYIPF4
PFAMsYip1
Model size834
Max annot lvl2759|Eukaryota
KEGG koko:K20363
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons5
Evalue7.54e-128
EggNOG OGsCOG5080@1|root,KOG3103@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_003430.1
Descriptionvesicle-mediated transport
Cds size828
COG categoryU
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig774.41.2prot_P-littoralis_Contig774.41.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig774 114710..122173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.3002105-UTR-P-littoralis_Contig774:114703..1147091680791597.3002105-UTR-P-littoralis_Contig774:114703..114709Pylaiella littoralis U1_48UTRP-littoralis_Contig774 114704..114709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.3141642-CDS-P-littoralis_Contig774:114709..1148831680791597.3141642-CDS-P-littoralis_Contig774:114709..114883Pylaiella littoralis U1_48CDSP-littoralis_Contig774 114710..114883 +
1680791597.3272588-CDS-P-littoralis_Contig774:119395..1196411680791597.3272588-CDS-P-littoralis_Contig774:119395..119641Pylaiella littoralis U1_48CDSP-littoralis_Contig774 119396..119641 +
1680791597.3371084-CDS-P-littoralis_Contig774:120402..1204741680791597.3371084-CDS-P-littoralis_Contig774:120402..120474Pylaiella littoralis U1_48CDSP-littoralis_Contig774 120403..120474 +
1680791597.3514583-CDS-P-littoralis_Contig774:121188..1212951680791597.3514583-CDS-P-littoralis_Contig774:121188..121295Pylaiella littoralis U1_48CDSP-littoralis_Contig774 121189..121295 +
1680791597.362464-CDS-P-littoralis_Contig774:121944..1221731680791597.362464-CDS-P-littoralis_Contig774:121944..122173Pylaiella littoralis U1_48CDSP-littoralis_Contig774 121945..122173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig774.41.2

>prot_P-littoralis_Contig774.41.2 ID=prot_P-littoralis_Contig774.41.2|Name=mRNA_P-littoralis_Contig774.41.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp
MEDEWYSGGDTAVPAAAGGAIPGNNGGGAAKSGHYGDSFTPPTSQVGGNA
GQQARNIHAYRGSGASMGGYVGHGAAPAGGLQGGGGMGGGGAVGSIIEED
DEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLV
FCLCFGLCLLLTGKPHFGYIYGFGLFGCIATAMVLNLIGEKPIDLWKTTS
VLGYCLLPVIGLAALGIVQDLQGAVGHVLGLVAVAWCTISATRLFEEYLD
MRRQRYLVAYPVGLLYACFVLITVY*
back to top

mRNA from alignment at P-littoralis_Contig774:114704..122173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig774.41.2 ID=mRNA_P-littoralis_Contig774.41.2|Name=mRNA_P-littoralis_Contig774.41.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7470bp|location=Sequence derived from alignment at P-littoralis_Contig774:114704..122173+ (Pylaiella littoralis U1_48)
ATTGCGATGGAGGATGAATGGTATTCAGGAGGTGACACCGCCGTTCCGGC
GGCCGCTGGCGGAGCGATTCCCGGGAACAACGGCGGCGGCGCGGCAAAGA
GCGGTCATTACGGAGATTCGTTCACCCCCCCGACCTCCCAAGTCGGAGGA
AACGCGGGCCAGCAGGCGAGAAATATTCATGTATTTACTTCGTACGTATC
CAATCCTGCTGTGCGCAGGCGTTTACATTTTGACTCGTTCTCCCTTCCGA
GGTTTTGTTTTGTTCTGAAACGGGTTTGATCTTGCTCTGCTGCTTTATGA
TACCAGGTACAAAACATGTACTCCGTACTTCGTATCGTATCATACCGGTC
GCCCCGGTGGACTAGTGGTCCCCTCGTTAACCACCACTAGACGCAGAGGA
ACGGGGGTTCGATCCCCGGTGAATGTGTTCCTTTCCTACTCTGAAAGCGG
CGATGCTGTTAGTTATAGCAGATTCGGCTTCGCCAACGAGGGTAGGGATC
ACGGATCCCTGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAA
GGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCG
ATGGGCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGA
GAATATGGGATGACAACACATAGCATGTCATACGTTCTTGTATGATGTGA
TACTTCGAAGTACTCCGTACTTCGTATGATAGACTTCGAATCATACAGCA
GTAAAAGCATCTGTCGGCGGTCCATATCTACAGCGGCACAGCTTCGTATC
ATAGCGTGTGTATACTGCTGTGTATCAGCCGCAGCCGCAGAGAGAGCGAG
AGAGCGAGAGAGCGAAAGAGCCGTGAATATCGGCGGCGGGAGCTCCGGGC
GGGCGTGACAGGTTCCACGCACCACAACACGCACGCTGCGGTCTCACATG
TGTGTGGTGATGTTGTGTGGGCCATATCATTGAGCAGTTGGTACCGCGGT
GGGTGGCCGATTCCACGAGAGAATGGGTGAGAACACAAAGCCGCTGTCCG
TCTGTGTGGGTGTTGTCATACCATCTATTCTGGGCACCAGTCTACACCTT
TCGGTACGAAGTGGGTGCATCAGCTGGGGTCACACAGAAGGAAGGTCAAG
CGCTAGCTTTTTCACTTTTTATTTTGTTTTATTCCCCAAACCTTCCTCTT
GCGGTACATGCCTTTGGTTTTAAATGTGAGTCGGGTACAGCAATCTCCTT
TTGTTTACTCACGAGTAATTCGCTTTCCATTGTAAAGTCGCAACAGACGC
TCCCAGAGAGAATCGGACCTACTACCTTACAACTAGTACGTCGGTTAACG
AGGGAACCTGTGGAAAATGATTTTCATTCTTTCATACATGTGACATGATA
TAATTAATGCGAAAGTATCCGTACGTCCACGTATTTTTTTTTCATTTTTT
TACGAAAGACATCAATACAGTATGTTCGTTCGCCTCTCTCTAGACGGCAG
TAGTATTTACACTCTGTCAGCGGATCTTCCTTCCTGGGGCATTTGACGGC
CTCTGACGGCCTCTGATCGGTCAACCTCATGTGTGCCTGAAGCACACCGC
GTTCTGTCCTTCGGACCACCAGCGTTCTACGACCGCGGCGCAGCCGTGGT
TGTGCTCGCTACGGCCCTCCTCGGTCGGTCGTGAGGGTTAGGGGTTAAGG
TTGGGGTGGGTTGGGTTGGGTTGCGTTGGGGTAGGTGGGTGTGTATGTCA
TGGTTTTGTGCTGAACTGAAGTTCGAAGCTTCTTTCAGACCTAAAGATCC
TCCAACAGAGCGTAAACGAACACAGAGTAATATAATATACATCTACCTGT
GTTTCAACAACTCAGATAACATACCGTTGCAGCTCCCCTGAGGATATCAG
GCTCAACAAGACAATTCGGGAGTCATCTTGTGAGACTGTTTGCTGGACCT
GGCCTTCCTGGGGTTGTCACAGGGGACATCCCATGAGATCCACCCGCCGA
GGTTCCACCCGCGAACCCCCGTCCGGGACGAGATGAGTCAGCCTTGCCAC
CTACGGGAGGTATGTACGTTCCAGGCCCATCGTTCATCCTCCCGCTGTGA
GGAGATTGGACAAAGGCGGAAGGCTCAAATCTGTATCACGTCGAACGGCA
TAGTGGTCTATACTGGACGCATCAACAGCTCCTGGTCTGTCGTGGACCGA
GTGGGGCTCGTCATTTCTCAGGCCGTTTCGACCCAGATTGGCATCGACTG
CGTGAGAGACTGTTGCCCCTGATCTGCAGCTCCTTCAGACACTGACTCAG
ACGCGATCCCACCTGCTGCTGTATCTCGATCTCTCCGATAGACACATTGC
CGCCCGTTGGTCGACGTTGATGTAGTCTCGTCCGTATTTGTCAGTATTGG
TGCCCTGCCTGGTGTCCACGTCGATCACACACTCATCGATGGCCACTATG
TCGCCTTCGTCCAATCTCCTCAGAGCTTGAGGATGAACGACGGGCCTGGA
ATGTACATACCTCCCGTATGATGACAAGGCTAACTCATCTCGTCCAAGAC
GGGAGTTCGTGGGTGGAGCCTCGGCGGGTGGATCTCATGGGATCATAAAT
GTTTTTAGAGATCCCATGAGATCCACCCGCCGAGGCTCCACCCGCGAATC
CCCGTCCGGGACGAGATGAGTTAGCCTTGTCATCATACGGGAGGTATGTA
CATTGCAGGCCCATCGTCCATGGTCCCGCTCTGAGGAGATTGGACGAAGG
CGGAAGGCTCAAATCTGTATCACGTCGAACGGCATACTGTAGTGGTCTGT
ACTGGACGCATCAACAGCTCCTGGTCTGTCATAGACCGAGTGGGGCTCGT
CATCTCTCAGGCCGTTTCGACCCAGATTGGCATCGACTGCGTGAGAGACT
GTTGCCCCTGATCTGCAGCTCCTTCAGACACTGACTCAGACGCGATCCCA
CCAGCTGCTGTATCTCGATCTCTCCGATAGACACATTGCCGCCCGTTGGT
CGACGTTGATGTAGTCTCGTCCGTATTTGTCAGTATTGGTGCCCTGCCTG
GTGTCCACGTCGATCACACACTCATCGATGGCCACTATGTCGCCTTCGTC
CAATCTCCTCAGAGCTTGAGGATGAACGACGGGCCTGGAATGTACATACC
TCCCGTATGATGACAAGGCTAACTCATCTCGTCCAAGACGGGAGTTCGTG
GGTGGAGCCTCGGCGGGTGGATCTCATGGGATCATAAATGTTTTGAGAGA
TCCCATGAGATCCACCCGCCGAGGCTCCACCCGCGAACTCCCGTCTTGGA
CGAGATGAGTTAGCCTTGTCATCATACGGGAGGTATGTACATTGCAGGCC
CATCGTCCATGGTCCCGCTCTGAGGAGATTGGACGAAGGTGGAAGCTCCA
GGAGACGCGATGTAGCCCTTCACAGTCCCCGAGCTCCTTATGGAGTTGAC
CAGGACTTTGTTTATCCTTATCATCGTAATGAGCAGAGTCTTGACACACG
ATACATTATGTAGTGAGTATGTACGGTGTATGTGTTTGCTGTCATTTTGT
CTTTACTCGTACGAATTGATTTTTAAATTGACCCGTATGCATGTTCGGAT
TTTCTGATGCTGCTGCTGCGGCCCGACTCATCTTCGTTGCCTTTGTTCAT
TCAACCCTGCCATTGCCATGGCCATGGATGGATCGATCATCCCCTTTTCT
GGCCTTTACACTACCCACAAACTGCTGCATGTACAGTATTGCCATTTCTG
CTGCCAGAGTGCTGCGCATCCTCGGGCGGCACGGCACGCCCACAACGCTT
TTGCTTTTCCACGAGACGCCGACCCGACAGTCTCAAGATCCCACCCGAGT
GATACAACGCTAAATCGTATCGCACGACGAAGTCATGCTCTTCGAGGATC
ATTGTATGATCCTACCGTCAGAGTGTGGCTGGCTCTTAACAGCCGTTTTT
ACAGGCAACCTACGAAATGAAAGACGTGAAGCCCCTTCATGCATGAGAAT
GGTGCATAGGTGAAATCATTGCCCAAGAACACCTCTGTGCAGAATTTTGT
TTCACAACAAAGGCACCGACAGGCATTTTTCTTCAGGGAAACTTTCCATT
GAGCCCCCCCCCCCCCCCCCCCACATCTTGGGCATTGTGCAGTTCGGTCT
GTCGTTCATGTGAAGACGGCTGTTTATGGGCACAGCAGTCAGCACGTTCG
TTGTTTTTTCATGATTTCCTCCGCTCACACGGCGGCAAACCTTCTCCCAT
AGCGAATCACAATCACTTCACCATCAGCCGGAATGGCTGCTGTTTCCTGG
GCAAAGCCTTATCGTACGCATGTATACTTCGAACGACAATACAACACTGC
GGTTGATTTGCTGGTGCTACAACTCCACGGCCCTCTCGTATGCACGCCGT
CTGGTGCATGAAGCACCGTCAGGCCACTTCGTACCGATAAGGCATCCCGG
CTCTGCCGCACTCATCCCTGTTTGACAACCCTGTGTGCGTCCCGTCTGCA
GCACGCCCCCCCCCCCTCGTCCTCCCCCTCCCCCTCCCCCCCCCCCGCAC
ACAAGAAGCACTCCTTTTTTCCTCTGACAGGTGTGGCCAAATGTCTAAAT
TGTGACTCAGGCAAGCAACAACAATGAGTAAGTACCCCCCATCTCCGCCC
TCCCAAAACCGTACCTTTTTTTTGCTGCGATTTTACTGTCAGGCTTACAG
AGGTTCCGGTGCAAGCATGGGCGGCTACGTTGGGCACGGAGCGGCACCAG
CAGGAGGCTTGCAAGGGGGGGGGGGTATGGGAGGGGGCGGGGCAGTTGGT
TCAATAATCGAAGAGGACGACGAGGACTATGAGAACGAGCCACCCTTGCT
GGAAGAGTTGGGCATCAACTTTGAGCATATCTGGTCGAAGACGCTCGCCG
TCATCTTGCCGACGAAAAAAATCGACATTAATTACTTGGTGAGTCGGGTA
TGTTTTTGGCCTGTTCTGTGTTAGATGGAGTCAAAGGTTGTTTTCATCGA
GAGTCTGGTTGGTGGCATCTTCCTTGTAGTAGAGTGATCTCCCCGGCAGC
GTGCTGTTTGATTTCGGCGGACTTTTCCGTGCACTGCTGTTGAGCATGAT
TCAGTGCTTTAGCGTACACATCCACGGGTACGGCGGATGGAACAAAATAC
GAGGGTAGTCGGCAGAAAGAGCGCACTCTTTCATTTTCGTGCGATAGCGA
CTAGAGCAAGAAGAAAGTGGAGGTCAAAGAGGACGTACACATCATATCAT
GCGGCGGTGCGTTGACGGGTGAAGAGCGGTATGGTGCGCCATGTATACTG
ACTGCTGTACGAAGTGCGGGTAGGTAAATACAGCAGTGTTGCCGGGGTTT
GTGGCAGAATAGGGAGCACTGAGCACTACCAGGTACATACCGAAGCGCTC
TCGTTCGCGGCACTTTCATTCGCCGCGCTAGCAATGCGAGGGTGTACCGT
AGGGTGCAGCTGGCATCAATGTTCTTTTCCGCGCGAGGCTTTTTGCCCTA
CTCGTACCAGCGAGATCGTGTCTTGGTGTATCATACCAAAGCAGCGGATT
TTGGGCAAAGGTGGCTGAGGGTTTCTGCTGCTGCGCGCCGTTGAGAACAA
GCCTGATGAACTGACGCCGCCTACTTTCGCTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGTATTTTCATGGGGCCTGTTCCCCTATCCACCAGG
ATGACACCGACCTTGCTGGCCCGCTTGTATTCTGTCTTTGCTTCGGGCTG
TGCCTTCTATTGACTGGAAAGGTGAGTTGCTTTTTGCGTCTATCACAAGA
AGAAAAGCGTTTTTTTTTTTGTCTAACCAATGCTATTCTTGGGATGGACA
CGTGGCCAACGTAAGCGGATAGAAGAGTGTAGTAGAGGAGCACACGTGGG
CAAGATGGGTGCGATCCTATGTATAGAGCGGACTCGCATGTTGGCACTCG
GGTTAAAAGGTGTACTGCCGGGAAATATTTTGAGGTGGCAATGGCTGCTG
TACCACTACTGTCCCGGAAACCCGGGATGAGTTTTGTGAATGAACGAACT
ACTTTATAGGACTTTTTATGACGCAGCTCAGAAACGAAAGACGATCGCTG
TGATCGGTGATGAACGGTGGCCGTGAGAGGCCAGAGGAAAGGTAGGGGGC
AACATGCGCAACGGGTTTTGGTGTTGGGATACGGCAAAAAAAAATCGCGC
GAAAGGAGCCTATAATAAAAAGTTGTACGAAACTCCCCGCAGACGAAAGT
AGGCACGGCGTTGCTCCGGCTCGAAAGACATGCATGCGCACTCGTTGGTC
AAAAGACCGAGGCAAAGCCACAAATGGGAACCTCCCGCCCCCCCCCCCCC
CCTCACTTGCTGCACTTTCGGGATGACGTCACACTCGGAGACAGCCGCTA
ACGTTCCGCTCCGCCTGGTTTGCCCCCTCCCCTCTCTCCTCTGCTCGTCT
TTGGCGTCAATTCATGCCATACCGATGATTCACAGCCGCACTTCGGGTAC
ATCTACGGATTTGGGTTGTTCGGGTGCATTGCGACGGCCATGGTGCTCAA
CCTCATCGGAGAAAAGCCTATCGATCTCTGGAAAACCACAAGGTGTGTTG
TGAGTGTATCCCTAACCCCCGCCAACCCCCCTTCGACCCATCTGCTGCCC
CCCCCCCGCCCCCCGACGTTGTTAATAAATTTAATTATAGCGCGAAGCAC
TCCGTGTCTATTTGGAACTTTTCGACGTTTTTGTTTTCACCAAAATCCGA
GTCGGGTCGGACTTAGAAATATCTTGGTCCGCAGCAGTCGGCTCGCCCTT
GAGGGATGGGTACATTGTAGTTGTCGGTGTGCTTGTCAATTGTGACCGTT
GTCAAAGAATTAGAGGTTGTTGGTGCTACGGTCAGGAAGCATTGTCAAAA
TGTCAACGATGGGAGTCCATGACTCGTTGAAATATTTCCCTCGTCGGCCG
GTGATGTCATTCAGGACGGTGGCACCAGTAGTAGATGGCCGTGTTAACCG
GCCGGCCATCTGTCAACCGGTGATTTTTTACCAACAAGTGATGTAAAGGA
TGGAATGTTGTGAAGAAAAAAATCATGGGAATTTCGTGGCAGATGGAAAA
GCTCCTACCGTAGTAATCGACAGTGCAGTGGCATCATCAACCAGGAATTA
TCCACCAACCGACGTGGATTAGCTTCGCAACTCCATCCAGCTATTCCCCC
CCCCCCCCCCCCATCGACGTCTCCACCCTGCCAAACCCCAGTGTTCTGGG
GTATTGCTTGTTGCCGGTGATAGGCTTAGCGGCGTTGGGGATCGTGCAGG
ACCTGCAAGGGGCGGTGGGGCACGTGTTGGGTCTTGTGGCGGTGGCATGG
TGCACGATATCGGCGACGCGTCTGTTCGAGGAGTACCTGGACATGCGAAG
ACAACGGTATCTGGTGGCCTACCCCGTGGGACTGCTGTATGCGTGTTTTG
TCCTCATCACGGTGTACTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig774:114704..122173+

>mRNA_P-littoralis_Contig774.41.2 ID=mRNA_P-littoralis_Contig774.41.2|Name=mRNA_P-littoralis_Contig774.41.2|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig774:114704..122173+ (Pylaiella littoralis U1_48)
ATGGAGGATGAATGGTATTCAGGAGGTGACACCGCCGTTCCGGCGGCCGC
TGGCGGAGCGATTCCCGGGAACAACGGCGGCGGCGCGGCAAAGAGCGGTC
ATTACGGAGATTCGTTCACCCCCCCGACCTCCCAAGTCGGAGGAAACGCG
GGCCAGCAGGCGAGAAATATTCATGCTTACAGAGGTTCCGGTGCAAGCAT
GGGCGGCTACGTTGGGCACGGAGCGGCACCAGCAGGAGGCTTGCAAGGGG
GGGGGGGTATGGGAGGGGGCGGGGCAGTTGGTTCAATAATCGAAGAGGAC
GACGAGGACTATGAGAACGAGCCACCCTTGCTGGAAGAGTTGGGCATCAA
CTTTGAGCATATCTGGTCGAAGACGCTCGCCGTCATCTTGCCGACGAAAA
AAATCGACATTAATTACTTGGATGACACCGACCTTGCTGGCCCGCTTGTA
TTCTGTCTTTGCTTCGGGCTGTGCCTTCTATTGACTGGAAAGCCGCACTT
CGGGTACATCTACGGATTTGGGTTGTTCGGGTGCATTGCGACGGCCATGG
TGCTCAACCTCATCGGAGAAAAGCCTATCGATCTCTGGAAAACCACAAGT
GTTCTGGGGTATTGCTTGTTGCCGGTGATAGGCTTAGCGGCGTTGGGGAT
CGTGCAGGACCTGCAAGGGGCGGTGGGGCACGTGTTGGGTCTTGTGGCGG
TGGCATGGTGCACGATATCGGCGACGCGTCTGTTCGAGGAGTACCTGGAC
ATGCGAAGACAACGGTATCTGGTGGCCTACCCCGTGGGACTGCTGTATGC
GTGTTTTGTCCTCATCACGGTGTACTGA
back to top