mRNA_P-littoralis_Contig773.19.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5KPR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR3_9PHAE) HSP 1 Score: 322 bits (826), Expect = 1.510e-108 Identity = 155/185 (83.78%), Postives = 169/185 (91.35%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMEL VDSDFA+KATDRRSVSGA+VM AGAC+MYL R QKSVTLSSTEAEY+A+ +GMKEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARG
Sbjct: 21 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMIAGACVMYLCRMQKSVTLSSTEAEYMAMFDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 205
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 332 bits (850), Expect = 1.620e-107 Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARG
Sbjct: 355 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 539
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE) HSP 1 Score: 319 bits (818), Expect = 2.210e-106 Identity = 159/200 (79.50%), Postives = 171/200 (85.50%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAE-------------YVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGSS 561
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAE YVA+++GMKEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFI ERVARG S
Sbjct: 100 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTRGNGITFQRGTEGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEXXXXXXXXXXXXEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIHERVARGGS 299
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 332 bits (850), Expect = 4.480e-105 Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARG
Sbjct: 579 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 763
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE) HSP 1 Score: 321 bits (823), Expect = 1.290e-103 Identity = 156/185 (84.32%), Postives = 169/185 (91.35%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ GITFQRG GG+HMEL VDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GM EAIFLRYLW IF LDVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARG
Sbjct: 342 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGCGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 526
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE) HSP 1 Score: 311 bits (798), Expect = 1.060e-102 Identity = 145/185 (78.38%), Postives = 170/185 (91.89%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYS+APK VHW+AALH++MY+R T+ +GITFQRG GG +E++VDSD+ASKATDRRSVSG VVM AG+C+ + SRTQKSVTLSSTEAEY A+A+GMKEAIFLRYLW+FIFPD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RG
Sbjct: 125 FRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHIVMYIRCTSAYGITFQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRG 309
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 332 bits (850), Expect = 1.560e-100 Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARG
Sbjct: 1655 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARG 1839
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE) HSP 1 Score: 326 bits (835), Expect = 1.760e-100 Identity = 157/185 (84.86%), Postives = 171/185 (92.43%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKS TLSSTEAEYVA+++GMKEAIFLRYLW FIFP DVGCT V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG
Sbjct: 883 FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSGTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARG 1067
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE) HSP 1 Score: 317 bits (812), Expect = 6.910e-98 Identity = 152/185 (82.16%), Postives = 169/185 (91.35%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FR LVGH+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLM+VR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++GMKEAIFLR+LW F+FP DVGCT V EDNVGA +LAS A+TPNSKHIDI+HHFIRERVARG
Sbjct: 771 FRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARG 955
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Match: A0A6H5JB00_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB00_9PHAE) HSP 1 Score: 300 bits (769), Expect = 2.300e-95 Identity = 146/185 (78.92%), Postives = 163/185 (88.11%), Query Frame = 1
Query: 1 FRSLVGHMMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLSRTQKSVTLSSTEAEYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 555
FRSLV H+MWLANQTRPDILNAVRAVARYSHAPK +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+ +++ STEAEYVA+++GMKEAIFLRYLW FIFP DVGCTLV EDNVGA +LASNPATTPNSKH+DI+HHFIRERVARG
Sbjct: 381 FRSLVRHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACV------RRASPCLSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTLVWEDNVGAFHLASNPATTPNSKHVDIRHHFIRERVARG 559 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig773.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig773.19.1 >prot_P-littoralis_Contig773.19.1 ID=prot_P-littoralis_Contig773.19.1|Name=mRNA_P-littoralis_Contig773.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp MMWLANQTRPDILNAVRAVARYSHAPKLVHWRAALHVLMYVRGTTDFGITback to top mRNA from alignment at P-littoralis_Contig773:108782..109597- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig773.19.1 ID=mRNA_P-littoralis_Contig773.19.1|Name=mRNA_P-littoralis_Contig773.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig773:108782..109597- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig773:108782..109597- >mRNA_P-littoralis_Contig773.19.1 ID=mRNA_P-littoralis_Contig773.19.1|Name=mRNA_P-littoralis_Contig773.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig773:108782..109597- (Pylaiella littoralis U1_48)back to top |