mRNA_P-littoralis_Contig773.2.27 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig773.2.27 vs. uniprot
Match: D7FRV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV5_ECTSI) HSP 1 Score: 535 bits (1378), Expect = 9.940e-167 Identity = 366/595 (61.51%), Postives = 407/595 (68.40%), Query Frame = 1
Query: 1321 MCSPEGGRGGAGRGXXXXXXXXXXXXXXXXXXXXXLSEFWSCLDPKQRDSLLTINGRAVRDALDCELCRDLVSSATFALEEETKVEMQPSPPLPGTRPKGSLNSLVKSKPKPPKHRPKPTASGLRVVGDTAFMADWVGWPEIQRRWPCYVKYLAGVFALQPSEVLDRAVAEMANIDEPWHSVAREP-QGGCYCKGKMILQVVDMLTYPRPVRKFEVLIDQEMSVQGLRELMLMNVKLESLPKLVLLTRGKPIGIEKDMLTLAELGFKNRQQVVVSQVLGGPAVDDRGTEEKNRQFVGDLLFGGTSPNDAAAAAPKLNKATAG-----------------------GRQAASARGPTPAVTDGAPVGATASSSGGRTADPVDTVEGEEGALSPSS-----PLDAGAAGXXXXXXXXXXXXXGCDSGEAV--GKGGKRAAEDKD------QGAGEDGGDADGYGDDVRGRDDTEXXXXXXXXXXGRNGSSEPLASGRTTGGLMGLLETV-ASGQGVTPGRGPELLALSVLTLGPDGEMNGEPGAGRVPSLFANHGFQVLGQTLSRLARGQVAEAWKAELKAREHESRLLEELEAEEG 2991
MCSPE GRGG XXXXXXXXXXXXXXXXXXXXXLSEFWSCLDPKQRDSLLTING+AVRDALDC+LCRDLVSSATFALEEETKV+MQP PPKH PKPTASGLRV+GD AFMADWVGWPE+Q RWPCYVKYLAGVFALQ +EVLDRAV+ M+ I+EPW V EP GCYCKGK+IL+VVDMLTYPRPVRKFEVL++ +MS+ GLRE+ML+NVKLES KLVLLTRG+ IG EK+ TL ELGFKNRQQVVVSQVLGGP+ DD GTEEKNRQFVGDLLFGG++PN+A A APKLNKATAG G + +G P T G TASSS GR A P T +G EG L+ S P+D G D G A +G KRAA+D+ +GAG+ D XXXXXXXXXX +G PL + +M LE V A RGPELL LSVL GPDGE NGEPG GRVPSLFANHGFQVLGQTLSRLARG +A+AWKAELKARE+ES LL+ELEAE+G
Sbjct: 1 MCSPEPGRGGXXXXXXXXXXXXXXXXXXXXXXXXXLSEFWSCLDPKQRDSLLTINGKAVRDALDCDLCRDLVSSATFALEEETKVDMQPXXXXXXXXXXXXXXXXXXXXXXPPKHSPKPTASGLRVIGDKAFMADWVGWPEMQMRWPCYVKYLAGVFALQQTEVLDRAVSAMSEIEEPWRPVPPEPGDRGCYCKGKLILKVVDMLTYPRPVRKFEVLVEDQMSLLGLREIMLVNVKLESATKLVLLTRGRAIGPEKNNHTLQELGFKNRQQVVVSQVLGGPSTDDSGTEEKNRQFVGDLLFGGSTPNEATATAPKLNKATAGAXXXXXXXXXXXSSAVANGGTVDGNASPPPKGSAPGATSHD--GGTASSSAGRFAGP--TSKGMEGCLARDSASXXXPVD---------------HSPGADGGGAAEASRGRKRAADDRYDEVYHYEGAGDF---------DDXXXXXXXXXXXXXXXXXHSHGKEPPLMERADS--IMDTLEAVHAQETEAYAVRGPELLVLSVLKCGPDGETNGEPGTGRVPSLFANHGFQVLGQTLSRLARGNIAQAWKAELKAREYESSLLKELEAEQG 565
BLAST of mRNA_P-littoralis_Contig773.2.27 vs. uniprot
Match: A0A6H5JCE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE8_9PHAE) HSP 1 Score: 485 bits (1248), Expect = 5.590e-144 Identity = 607/1194 (50.84%), Postives = 688/1194 (57.62%), Query Frame = 1
Query: 1717 MADWVGWPEIQRRWPCYVKYLAGVFALQPSEVLDRAVAEMANIDEPWHSVAREP-QGGCYCKGKMILQVVDMLTYPRPVRKFEVLIDQEMSVQGLRELMLMNVKLESLPKLVLLTRGKPIGIEKDMLTLAELGFKNRQQVVVSQVLGGPAVDDRGTEEKNRQFVGDLLFGGTSPNDAAAAAPKLNKATAG-------GRQAASARGPTPAVTDG--APV------------GATASSSGGRTADPVDTVEGEEGAL-----SPSSPLD--AGAAGXXXXXXXXXXXXXGCDSGEAVGKGGKRAAEDKDQGAGEDGGDADGYGDDVRGRDDTEXXXXXXXXXXGRNGSSEPLASGRTTGGLMGLLETVASGQGVTPG-RGPELLALSVLTLGPDGEMNGEPGAGRVPSLFANHGFQVLGQTLSRLARGQVAEAWKAELKAREHESRLLEELEAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAKRELARQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQLEAQMSLLRLQGDA--QPKVGET-SESIKEASTPSQAALSTNHRASVGGSVGTGKKSKVKKQAXXXXXXXXXXXXGGVATAGTVPRAVPGSSXXXSSAGQIRRPIQQQHASHIAPQIISGGVIGSRVIAXXXXXXXXXXXXXXXXGGMLNXXXXXXXXXXXXXXXXSAASSAITDAISQFAGIGFSASPTSSPAXXXXXXXXXXXXXXXPPGPIAPPPGRTPSPTVPQHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPDCPAPVTSLAGLRQTASGAGEGGRDHRGLTVGATSAMAPADTVMVNAGVLP---AVVVAXXXXXXXXXXXXXAVAATFCAYCGGRLVAXXXXXXXXXXXXVIRSPEA-IGERVTSSPALPSAPGLALPNPQ----QQQAPLLSRAADAPAPPGHVGGGRGQQPQA-RGPPVGXXXXXXXXXXXXXXXXXSYLAGPDLLPIAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPFFQQFRSEANGXXXXXXXKGDRASGRRALSAGVSVAPGSGRPTRNSHDGGGQRQKGESXXXXXXXXXXXXXXVXXXXXXXXVAXASALEGILGGGMGSLSGGG---DGASDNTDVIHPW 5163
MADWVGWPE+Q RWPCYVKYLAGVFALQP+EVLDRAV+ M+ I+EPW + EP GCYCKGK+IL+VVDMLTYPRPVRKFEVL++ +MS+ GLRE+ML+NVKLES KLVLLTRG+ IG EK+ TL ELGFKN+QQVVVSQVLGGP+ +D GTEEKNRQFVGDLLFGG++PN+A A APKLNKATAG G +AAS+ + DG AP G TAS S GR A D +G EG L SP P+D GA G + +G KRAA+D+ A + G +D + D G D G+ EP R +M LE V + + RGPELL LSVL GPDGE NGEPG GRVPSLFANHGFQVLGQTLSRLAR +A+AWKAELKARE+ES LL+ELEAE+G XXXXXXXXXXXXXXXXXXXXXXXXXXXX +AKRELAR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQ+SLL LQ + QP E ++ + S P AA+ S G GKKS XXXXXX VAT P++ S G+IGSR+IA G + AS+ IT+ ISQFAGIGF+A+ SS A XXXXXXXXXXX GPIAPP GRT SP++ XXXXX XXXXXXXXXXXXXXX AP C AP+TSLA L+Q A G +TVG TSA+APADTVMVN G LP A XXXXXXXXXXXXX AA FC +CG RLV XXXXXXXXXX IRS +A +GE V +SP LP AP L LP+ Q+Q +LS A+ P PPG VGGGR Q+ + RGPP+ YL GPDLLP XXXXXXXXXXXXX LPFFQQFR EANG XXX R+ SAGV PG+GRP DG G XXXX V A A LEGILGGGMGSL + + N + IHPW
Sbjct: 1 MADWVGWPEMQMRWPCYVKYLAGVFALQPTEVLDRAVSAMSEIEEPWRPMPPEPGDRGCYCKGKLILKVVDMLTYPRPVRKFEVLVEDQMSLLGLREIMLVNVKLESATKLVLLTRGRAIGPEKNNHTLQELGFKNKQQVVVSQVLGGPSTNDSGTEEKNRQFVGDLLFGGSTPNEATATAPKLNKATAGAAGGATGGTEAASSAIANGGIVDGNAAPPLKGFSPGSTSRGGGTASRSVGRVAGATDASKGAEGCLERDSASPPPPVDNSPGADG---------------EGAAKASRGRKRAADDQYDEAYDYEGSSD-FDGDGSGHDXXYDDEGGDKHGHGK----EPPLMERVDS-IMDTLEAVHAQETEAYALRGPELLVLSVLKCGPDGETNGEPGTGRVPSLFANHGFQVLGQTLSRLARRNIAQAWKAELKAREYESSLLKELEAEQGGAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQDEENAKRELARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLSLLGLQDETKGQPNHDEDIRQAFQNKSHPPSAAVEQPT------SGGKGKKSXXXXXXXXXXXXKV------VAT----------------------------------PKLSSKGIIGSRLIAAEAAGGGSGSTINGNGG-----PPATQSDGSSCTMKHTYASAEITETISQFAGIGFAATSPSSLATPVQXXXXXXXXXXX--GPIAPPQGRTASPSLLHDPRSPQAIVHNDQRQYVHXXXXXGSVHPQXXXXXXXXXXXXXXXH---APTC-APITSLADLQQAARGPA--------MTVGVTSAVAPADTVMVNTGELPGAAAXXXXXXXXXXXXXXXXXXXAAKFCTFCGERLVPATXXXXXXXXXXXIRSAQAAVGESV-ASPPLPPAPALVLPHXXXXXXQEQQHILSHASVRP-PPGPVGGGREQRAEPPRGPPMSASGRSPSSP---------YLGGPDLLPAG---------------------------------XXXXXXXXXXXXXSLPFFQQFR-EANGDTGGXXXXXXXXG--RSRSAGVVAGPGTGRP---GLDGAGXXXXXXXXXXXGKGETAAEVEVAEADEG---ASALELEGILGGGMGSLXXXXXXXNNGTSNGEAIHPW 1055
BLAST of mRNA_P-littoralis_Contig773.2.27 vs. uniprot
Match: A0A835ZFQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ4_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.380e-26 Identity = 101/329 (30.70%), Postives = 144/329 (43.77%), Query Frame = 1
Query: 1426 LSEFWSCLDPKQRDSLLTINGRAVRDALDCELCRDLVSSATFALEEETKVEMQPSPPLPGTRPKGSLNSLVKSKPKPPKHRPKPTASGLRVVGDTAFMADWVGWPEIQRRWPCYVKYLA-GVFALQP--SEVLDRAVAEMANIDEPWHSVAREPQGGC------------------------------------------------------------YCKGKMILQVVDMLTYPRPVRKFEVLIDQEMSVQGLRELMLMNVKLESLPKLVLLTRGKPIGIEKDMLTLAELGFKNRQQVVVSQVLGGPAVDDRGTEEKNRQFVGDLLFG 2223
L +FW CL+ QR++LL+I ++ D + C CRDL++SA L+++ G P G H P S V DT +A G +K L GVF +P S+ L V +N + H A P GG YC+GK+ ++ VD LTYPRP RKF +L+D+ M + LRE+M L+S +LVLL RG+P+ EKD +TLA+L K+ + +S+ LG +V++ G +EKN+QFVGDLLFG
Sbjct: 21 LRQFWDCLERPQREALLSIGSDSLIDTVHCAGCRDLLASAIKNLDDDAW----------GKSPHG--------------HDAPPPPSARGYVKDTRALAKKSGGFVTLPATTMLLKLLEDGVFVSEPAASDDLSAGVGSKSNALDFVHYTAPPPAGGASGHFQVLQGAYLQRAISSIDTAVGASLQTSAAAAGNGVGQQLLLKAQQAPAVVPPPPSCPYCQGKLNVRFVDTLTYPRPARKFRLLLDRSMLLGALREMMAAEAGLDSAAQLVLLYRGRPVPREKDYMTLADLDVKSNGMIAISRTLGA-SVEEDGADEKNKQFVGDLLFG 324
BLAST of mRNA_P-littoralis_Contig773.2.27 vs. uniprot
Match: A0A4D9CSN0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSN0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.610e-14 Identity = 68/198 (34.34%), Postives = 94/198 (47.47%), Query Frame = 1
Query: 1765 YVKYLAGVFALQPSEVLDRAVA------------EMANIDEPWHSVAREPQGG--------------C-YCKGKMILQVVDMLTYPRPVRKFEVLIDQEMSVQGLRELMLMNVKLESLPKLVLLTRGKPI--------GIEKDMLTLAELGFKNRQQVVVSQVLGGPAV--DDRGTEEKNRQFVGDLLFGGTSPNDAA 2247
Y + G F L PS+ L+ + E A + P R P+ C +C K+ ++ VDMLTYPRPVRKF +L+ + M + LRE++ V LE L + R + + G E+D TL +G ++ QVVVS+VLGG D G KN+QFVGDLLFG T + A
Sbjct: 203 YTSFQNGSFDLLPSQALEALLLDEERGEEGGGEREKAGSESPLGRARRRPRSAGDGVGREGEKEDLPCPFCADKVFVRFVDMLTYPRPVRKFSMLLSKRMRIGSLREMLWREVGLEKEALLEIRIRNRRLTAGQGDAGGGEED--TLEAVGIRDGVQVVVSKVLGGDGEEGDRAGVNAKNKQFVGDLLFGQTGKGEGA 398
BLAST of mRNA_P-littoralis_Contig773.2.27 vs. uniprot
Match: A0A7S2RBA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBA8_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 8.140e-6 Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 1759 PCYVKYLAGVFALQPSEVLD-------RAVAEMANIDE-PWHSVAREPQGGCYCKGKMILQVVDMLTYPRPVRKFEVLIDQEMSVQGLRELMLMNVKL-ESLPKLVLLTRGKPIG 2076
PC V+Y A F L + + R ++ N++ + ++ YC+ K+ L+ VDMLTYPRP+R+F +LI+ +M + LR+L+ + V + +S +LV+L RGKP+
Sbjct: 150 PC-VEYRASTFTLVNFDNIQASLQSGCRMFPDLRNLEPVETYKAGKDLMVCSYCRDKLRLRFVDMLTYPRPIRQFWMLINGDMRLGSLRDLLAIEVNMSDSAEELVMLLRGKPLS 263 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig773.2.27 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig773.2.27 >prot_P-littoralis_Contig773.2.27 ID=prot_P-littoralis_Contig773.2.27|Name=mRNA_P-littoralis_Contig773.2.27|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1282bp MCSPEGGRGGAGRGGKGGGRRNRGGGGGSSSGGGGLSEFWSCLDPKQRDSback to top mRNA from alignment at P-littoralis_Contig773:16446..44347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig773.2.27 ID=mRNA_P-littoralis_Contig773.2.27|Name=mRNA_P-littoralis_Contig773.2.27|organism=Pylaiella littoralis U1_48|type=mRNA|length=27902bp|location=Sequence derived from alignment at P-littoralis_Contig773:16446..44347+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig773:16446..44347+ >mRNA_P-littoralis_Contig773.2.27 ID=mRNA_P-littoralis_Contig773.2.27|Name=mRNA_P-littoralis_Contig773.2.27|organism=Pylaiella littoralis U1_48|type=CDS|length=3846bp|location=Sequence derived from alignment at P-littoralis_Contig773:16446..44347+ (Pylaiella littoralis U1_48)back to top |