mRNA_P-littoralis_Contig772.17.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig772.17.3
Unique NamemRNA_P-littoralis_Contig772.17.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: D7FN66_ECTSI (Cysteine-rich PDZ-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN66_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 5.870e-52
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDDISDQRRTAK 766
            +WKDGARNTTGGDSGGRRVGHENMLLKHG+AKRRNNRFTPLTRVCRICK+KVNQ+HHYCQECAFSKGICGMCGRKTDDI++QRRTAK
Sbjct:   18 KWKDGARNTTGGDSGGRRVGHENMLLKHGAAKRRNNRFTPLTRVCRICKTKVNQDHHYCQECAFSKGICGMCGRKTDDITNQRRTAK 104
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: A0A1V9Z2F1_9STRA (Cysteine-rich PDZ-binding protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z2F1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.750e-22
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDD 739
            +WKDGARNTTGG  GGR++   + L K        +RFTP++R CRICKSKV+Q  HYCQ+C++ KGIC MCGRK  D
Sbjct:   18 KWKDGARNTTGGKDGGRKIAQNSALGKK-------HRFTPMSRACRICKSKVSQNAHYCQDCSYKKGICAMCGRKIAD 88
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: F0WBV1_9STRA (Cysteine-rich PDZ-binding protein n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBV1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.310e-21
Identity = 55/126 (43.65%), Postives = 74/126 (58.73%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDDISDQRRTAK*----------APV*RREGYKLESVKQVAAPK*DGVKIL 853
            +WKDGARN TGG  GGR VG   ++ K    KR +NRF+P+ R CRIC+SK+ Q  HYC +CA+ KGIC MCGRK  DIS    ++K           + V    G K+ +V+ + +P    + IL
Sbjct:   18 KWKDGARNVTGGKDGGRAVGTNKLVEK----KRISNRFSPMERRCRICRSKIGQNAHYCNQCAYQKGICSMCGRKMLDISQYNMSSKYLSTLLILDPDSGVSMTAGTKVATVETIQSPNESHLPIL 139
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: K3X4G6_GLOUD (Cysteine-rich PDZ-binding protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G6_GLOUD)

HSP 1 Score: 97.8 bits (242), Expect = 4.270e-21
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDDISD 748
            +W DGARNTTGG  GGR+VG   +L      K+R  RFTP+ R CRICK K  Q  HYC +CA+ KGIC MCGRK  D  +
Sbjct:   18 KWTDGARNTTGGKDGGRKVGGNRLL------KKRAERFTPMERKCRICKCKAGQHCHYCNQCAYKKGICAMCGRKVLDTKE 92
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: A0A8K1FKJ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKJ9_PYTOL)

HSP 1 Score: 97.4 bits (241), Expect = 6.390e-21
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDD 739
            +WKDGARNTTGG  GGR VG  + L +    ++R+NRF PL R C+ICK KV Q  +YC +CA+ KGIC MCGRK  D
Sbjct:   18 KWKDGARNTTGGKDGGRAVGSASRLSEK---RQRSNRFAPLERSCKICKGKVAQRAYYCNQCAYKKGICAMCGRKVVD 92
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: F0Y286_AURAN (Cysteine-rich PDZ-binding protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y286_AURAN)

HSP 1 Score: 96.3 bits (238), Expect = 1.400e-20
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDDI 742
            +WKDGARN TGGD GGR   + N LL+    + R  RFT   R C+ICKSKV Q+ HYCQECA   GIC  CG+K DD+
Sbjct:   18 KWKDGARNVTGGDDGGRATTYRNSLLQ---VRGRTQRFTAGVRGCKICKSKVAQDAHYCQECAHHHGICARCGKKVDDL 93
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: A0A024UK59_9STRA (Cysteine-rich PDZ-binding protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UK59_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.440e-20
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRK 730
            +WKDGARNT GG  GGR++    +L K        +RFTP++R CRICK+KV Q+ HYCQ C++ KGIC MCGRK
Sbjct:   18 RWKDGARNTAGGKDGGRKIAGNALLGKK-------HRFTPMSRSCRICKTKVAQDAHYCQNCSYQKGICAMCGRK 85
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: A0A836CAK2_9STRA (Cysteine-rich PDZ-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.470e-19
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 2 
Query:  536 GGDSGGRRVGHENMLLKHGSAK--RRNNRFTPLTR--VCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDDISDQRRTAK 766
            GG SGGR  G +NMLLKH +++  ++ NRF P+ R   CRICKSKV ++ HYCQ+CA+ KGIC MCG+K  D S+ + +AK
Sbjct:   41 GGSSGGRPAGPQNMLLKHKASQLGKKANRFNPIERQRTCRICKSKVTEDKHYCQQCAYQKGICAMCGKKMMDTSEYKMSAK 121
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: A0A3F2RG60_9STRA (Cysteine-rich PDZ-binding protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG60_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-18
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRK 730
            +WKDGARN TGG  GGR VG++  L K    K R+ RF+P+ R CR+CKS    + +YC +CA+ KGIC MCG+K
Sbjct:   18 KWKDGARNVTGGKDGGRAVGNDRSLTK----KSRSTRFSPVVRKCRLCKSSTAPKAYYCNQCAYKKGICSMCGKK 88
[Close]
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Match: A0A1W0A2U0_9STRA (Cysteine-rich PDZ-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2U0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.540e-18
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 2 
Query:  506 QWKDGARNTTGGDSGGRRVGHENMLLKHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKTDDISDQRRTAK*APV*RREGYKLESVKQ 817
            +WKDGARNT  G   GR++ H + L K        +RFTP+ R CRICKSKV+Q  HYCQ+C++ KGIC MCGRK  +            +   E + L S  Q
Sbjct:   18 KWKDGARNTKIGKDSGRKINHNSALGKK-------HRFTPMNRACRICKSKVSQNAHYCQDCSYKKGICAMCGRKIANTKQMSEDGSNLHLGHSEHFILNSTHQ 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig772.17.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN66_ECTSI5.870e-5293.10Cysteine-rich PDZ-binding protein n=2 Tax=Ectocarp... [more]
A0A1V9Z2F1_9STRA1.750e-2257.69Cysteine-rich PDZ-binding protein n=3 Tax=Saproleg... [more]
F0WBV1_9STRA2.310e-2143.65Cysteine-rich PDZ-binding protein n=3 Tax=Albugo l... [more]
K3X4G6_GLOUD4.270e-2155.56Cysteine-rich PDZ-binding protein n=1 Tax=Globispo... [more]
A0A8K1FKJ9_PYTOL6.390e-2157.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0Y286_AURAN1.400e-2056.96Cysteine-rich PDZ-binding protein (Fragment) n=1 T... [more]
A0A024UK59_9STRA5.440e-2056.00Cysteine-rich PDZ-binding protein n=2 Tax=Aphanomy... [more]
A0A836CAK2_9STRA1.470e-1954.32Cysteine-rich PDZ-binding protein n=1 Tax=Tribonem... [more]
A0A3F2RG60_9STRA1.370e-1853.33Cysteine-rich PDZ-binding protein n=2 Tax=Phytopht... [more]
A0A1W0A2U0_9STRA5.540e-1844.23Cysteine-rich PDZ-binding protein n=1 Tax=Thrausto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig772contigP-littoralis_Contig772:98532..100497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN66
Preferred nameCRIPT
PFAMsCript
Model size1462
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001650,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0014069,GO:0015631,GO:0016043,GO:0019904,GO:0030165,GO:0030425,GO:0031122,GO:0031974,GO:0031981,GO:0032279,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035372,GO:0036477,GO:0042995,GO:0043005,GO:0043025,GO:0043197,GO:0043198,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044297,GO:0044309,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045184,GO:0045202,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0060341,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071840,GO:0072698,GO:0097110,GO:0097435,GO:0097447,GO:0097458,GO:0098794,GO:0098984,GO:0099175,GO:0099572,GO:0120025,GO:0120038,GO:1901626,GO:1902897,GO:1903827,GO:1905475,GO:1905874
Exons3
Evalue8.7e-58
EggNOG OGsKOG3476@1|root,KOG3476@2759|Eukaryota
Ec32 ortholog descriptionPDZ-binding protein, CRIPT
Ec32 orthologEc-06_008570.1
Descriptionregulation of postsynaptic density protein 95 clustering
Cds size336
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791594.8197935-UTR-P-littoralis_Contig772:98531..989641680791594.8197935-UTR-P-littoralis_Contig772:98531..98964Pylaiella littoralis U1_48UTRP-littoralis_Contig772 98532..98964 +
1680791594.8728456-UTR-P-littoralis_Contig772:99804..1004971680791594.8728456-UTR-P-littoralis_Contig772:99804..100497Pylaiella littoralis U1_48UTRP-littoralis_Contig772 99805..100497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791594.8349786-CDS-P-littoralis_Contig772:98964..991461680791594.8349786-CDS-P-littoralis_Contig772:98964..99146Pylaiella littoralis U1_48CDSP-littoralis_Contig772 98965..99146 +
1680791594.8469036-CDS-P-littoralis_Contig772:99520..996091680791594.8469036-CDS-P-littoralis_Contig772:99520..99609Pylaiella littoralis U1_48CDSP-littoralis_Contig772 99521..99609 +
1680791594.8597584-CDS-P-littoralis_Contig772:99739..998041680791594.8597584-CDS-P-littoralis_Contig772:99739..99804Pylaiella littoralis U1_48CDSP-littoralis_Contig772 99740..99804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig772.17.3prot_P-littoralis_Contig772.17.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig772 98965..99804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig772.17.3

>prot_P-littoralis_Contig772.17.3 ID=prot_P-littoralis_Contig772.17.3|Name=mRNA_P-littoralis_Contig772.17.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MPVYSRANFTVSNISGVIYLVGHVQWKDGARNTTGGDSGGRRVGHENMLL
KHGSAKRRNNRFTPLTRVCRICKSKVNQEHHYCQECAFSKGICGMCGRKT
DDISDQRRTAK*
back to top

mRNA from alignment at P-littoralis_Contig772:98532..100497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig772.17.3 ID=mRNA_P-littoralis_Contig772.17.3|Name=mRNA_P-littoralis_Contig772.17.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1966bp|location=Sequence derived from alignment at P-littoralis_Contig772:98532..100497+ (Pylaiella littoralis U1_48)
TGGACATCAGTCAGCTTTGGCGAAATGAGGCAAGTTGGACGGACAGAACA
GAGATGGGCGCAACCAAACACCCAGGACGGAGAAGAATACTGTATGTACC
TTGTACAATGCCGCTGGACCATAATATTGACACTGTTTATTAAAGACCGA
CCGTGTTTGGGAAGTACTCGCTTAACGGATACAACACTCGTACCTACAGC
GTGTGACTCTGCATCCCTATGTAGCGCAGGCGACTCTGTTGCCGGTTCTG
GCGTGATTTTTAGCAGTCTACAGGTTTCGAATCCTTTGTTTAATTGTGTT
TGCTAAGTCAACCTGGTACATTTATGCCACCGAAACAGTATGTCTTCGAA
TAACCCAGCGGACTTCTTGCGCATAGGTTTTCCAATACCATAGCTTTCAA
AGCATCGAGAACGAACTTCATCTCGCGCGGTCCATGCCCGTTTACTCTCG
AGCTAACTTCACTGTGTCCAACATTTCCGGTGTAATATACCTCGTTGGTC
ATGTCCAGTGGAAAGATGGCGCTCGCAACACAACCGGGGGTGACAGTGGA
GGCCGGCGGGTAGGTCATGAGAATATGCTGCTCAAACATGGATCAGCAAA
GCGTCGCAATAACAGGTACCATTTATTGCATTGTTCGTGTATAAAAAAGT
GTTCAAGATGATTATCTTGGGGTGCTAGTAACTTTTGCTTACGTTGTGAA
GGGCATGCTTTTCCACGTATCATACCTGTACTTGGTGGAAATATCTGGAG
CCTAATGGTAGACCGCGACCCAATCTGTTGTCCCCCTAGTACCGAAGATT
GGACGGCCTGACTACTCGGTTGCATGACCGTGGTTTTGAGTGAGTGTCCT
CGAATGGCAGTGACTAAGCCTTTCGCAGCGGTGACGCTGGTGTTGAATCA
ATGCGGCCATTTATTTTGCAAGTTTCTTCTGCATGAGTGGTTCTTCAGCC
ATAAGTTTCCTTTGCCTAATGATGTGGTGTGCATTCCAGGTTTACACCTT
TAACACGTGTGTGCCGGATTTGCAAGTCCAAGGTAAACCAAGAGCACCAC
TACTGCCAAGAATGTGCCTTCTCGAAAGGTGCGTTTAGATCTACACTGGA
TGATCACACTTACGATGTACCAGTGCTGACTTGCTCTTTCGTTTTCAAGC
TTTTCCGAATCGCTACAACCACAGAGCTCTTCACGTTCTTGATGTCATGT
TTCATCAGGCATATGCGGGATGTGCGGACGAAAGACGGACGATATCAGCG
ATCAGCGACGCACGGCGAAATAGGCTCCCGTATAACGGCGAGAAGGTTAT
AAGTTGGAGTCGGTGAAGCAGGTCGCCGCCCCAAAATAGGACGGTGTGAA
AATATTGCTGTACGAATTGTAATTTATGTTTTGGGAGGTGCAAGGGCACC
CACTGCGTCCCCACCCAGGGCGGCGGGTTGAATGTTTCGGAGATAATATT
TCTGTTTGAGCTCGCATCACAGAGTCTCGTTCAGTAACGGCGAGACTGAG
GATAGGTACGGGGGCAGAGCTGACGGAAGCAAGATAGGGTCTTAAATGCA
CGCATCACACCACGAGGTGAATGATGGCGCGAAAAAACATCATGACGAAA
AATGGGAGCCAAGAGGCCAAGAGGAAGGGGACAAGACATGTAAAAAAATG
TGATGTGAGATATGTATGGTCATCGGATAAGTCGATAAATGGGGGGTTGT
AAAGTCATCAAAAGTGTTACCTGGTGGAGTTGAACGATTTCAGCACAAAT
CATGTTGGCCGTATTCCAGCCCATCACCAACCCTCCTTGCTGCCCTTCGT
TTTGAAGATTGAGCGAGTTCACAAATGGCAGCGGATGTGAACTCTTGGGC
GGCGAGACTACGCGCGTTCCCTGTTTTCGCCACTTTTAATGTATAAAAAG
GAACCTATTTTCTCAACAACAAAAACGAGCAGGCTTTTCGACCTTCGCCT
CCTGTGTGAGGCGCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig772:98532..100497+

>mRNA_P-littoralis_Contig772.17.3 ID=mRNA_P-littoralis_Contig772.17.3|Name=mRNA_P-littoralis_Contig772.17.3|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig772:98532..100497+ (Pylaiella littoralis U1_48)
ATGCCCGTTTACTCTCGAGCTAACTTCACTGTGTCCAACATTTCCGGTGT
AATATACCTCGTTGGTCATGTCCAGTGGAAAGATGGCGCTCGCAACACAA
CCGGGGGTGACAGTGGAGGCCGGCGGGTAGGTCATGAGAATATGCTGCTC
AAACATGGATCAGCAAAGCGTCGCAATAACAGGTTTACACCTTTAACACG
TGTGTGCCGGATTTGCAAGTCCAAGGTAAACCAAGAGCACCACTACTGCC
AAGAATGTGCCTTCTCGAAAGGCATATGCGGGATGTGCGGACGAAAGACG
GACGATATCAGCGATCAGCGACGCACGGCGAAATAG
back to top