mRNA_P-littoralis_Contig771.13.17 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig771.13.17 vs. uniprot
Match: A0A6H5JJJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ8_9PHAE) HSP 1 Score: 317 bits (812), Expect = 3.880e-84 Identity = 469/1407 (33.33%), Postives = 603/1407 (42.86%), Query Frame = 1
Query: 1420 VGDLGPASMRGSFSASGVPDELVAEKGQVLLVQETVCAMYDCPNGTDSVIVSDAIDEATTSTAESQAMLLSLSSSEGRRG------RRRLADFVDVQFEVPA------QATDGNVTGSKQAATLFNSVADPTARVAAADTLGITTADIGFGDLVYYEGAEFEIVNEFDSVDDDEEASVWATVLVAFILLVAMCLCSCCVLCVVTRGDREAGYLGKLGPTFGRATPPRKLVWRG---GKGSAIEGEDSTRVHKSRMTANRSMQPSARGTIVHSTS--ADSVKGGFNSAVSGV--------SDGTASLEKPFTYTNPMLKSEGSKKTGSPNEYGDDLAQHYERGYSAESS-TSDPPHTQTSNPLFSNPFSISAGGSSFASAARSGQ-------------------------------------------SRGGXXX-AGTDSQASWNSATTSDDMEPGSPSSSYNGGETEGGAGSSVYDSVSSAGHQHGSRRVGTMSTLSETSSRMPYGLSPVAEKMGEKGESSDM---SSNTTGGGGSVHHARGSGSYSGRDSTPTAAIAPRGRGEGSTEFD---------DEDAEAMLRAPSPGSVKRPLQPLLAQYSQSPVSL-------SSASAFGSRSGS----FASPKE-------------------RHSVRAEPQET---TSARLDVRFDFFCFTCRGSEGQAGRQCTERGGERKEGRGGAQALPNEGGCSLCGVRGARHARVIERSKLVEFRPPPSHSPFPPRPRPRPCFSCYPLSPNEIKAPGGVAQGTGNFTVPPLRHVRGTSERTAAGISEADFRGSGGSKSF-----VSVSEEGSMGGSSPGAALARNKP--PMAGVGT-SRAGSGLSHVSDSASEAXXXXXXXXXXXXXXXTGRSATVEPS-----------------AAIDEDRDVFQSLRQDRAVPTTTXXXXXXXXXXXXXGASKSLRFT-------------------------------------------------------------------SRGRAGRQAAAARRGSGTSGTSAFRDGGSDTHAPVVLTPATSSIESSTPASATAGTRAADDAASAVPPPPAYRSLDYSSADTNASSAVGAAAATSALAAQECRNTAIEAGTXXXXXXXARGEIKSEAQLLAAGXXXXAKATKGRPVPDDVRRKAIQAGAAXXXXXXXQAEFGGHFGSGGPYSSGGS--DVKSVLKTSSLFRSSS-RPLSVSFVDANSSDEYDDLNPHAGGGGGAGGMRALRQHLADPSQPSGSYRNQDSADSSGFSNESLSPSDTSSFDGMSSYGAP---SQASFATGTSMAXXXXXXXXXXXXXXXSSTGTATTAASXXXXXXXXXXXXXXX-------SQHSAYSFRRVSSESSLSDSDIERP 4980
VG LGPAS++GS SASGVPD LV EKG+ L+QE VCA+ +C +G +SVIV +A S ++++L SS G++G RRRLA+ DVQFEVP ++ +TGSKQAA LFN AD ++ A LGI AD+ FGDL Y+EG EF ++FD +D E AS WATVLVAFIL+ AM LCSCC C+VT+ E G G+ + S IE E RV KS MTA+ SM PS +++ STS A +V +S + S+ +++ + F YTNPM K E KK PNEYGDDLAQHYE S +S+ PH +T NPLFS+ + GGSS S A + + S G A + S AS S T+ + + SSS++ + G G + G ++ G +S SETSSRMP+GLSPVAE+ +GES + SS+TTGG +V+ AR G P + P GRG S D AE++ R PSPGSV RPLQPLLAQ QSP+S S++ A SRS S FASPK R + E + TS D + + R ++ + G G A+ + SL GV + V S L H+ + R Y S +E+K P G R S R A+G+S+A + SF VS S GA A P P G G ++ +G +D+A+ +SA V PS + +DE D F XXXXXXXXXXXXX +R RA + A R S S S S +PV + P+TS +S ++ G S +AA+ECR+ AIEAGT A GE+ +EAQL+AAG AKATKGR VPDDVRRKAIQAGA XXXXXXX G +S+G S ++KS LK FRS++ +P SVSF A S + + LRQHLADPS+PSGSYR +S DSS S ESLSPS F G S+ G SQASF T + + SS TATT ++ XXXXXXXX SQ S+YSFR SS S S+SD + P
Sbjct: 84 VGGLGPASVKGSISASGVPDALVEEKGEEALIQEAVCALVECVDGLESVIVGEA------SVRRARSLLTFSSSRNGKKGFRIGPRRRRLAELEDVQFEVPTPTSVPVESEAEPLTGSKQAADLFNKAADESSLTGVASALGIDVADLSFGDLAYFEGDEFTFSSDFDQAED-EGASTWATVLVAFILVTAMLLCSCCA-CLVTKHATEKGMAGRXXXXXXXXXXXXXXXXXAVMQERLSTIEEEQGLRVGKSEMTASHSMGPSPHHSLIRSTSQEAGAVTRSSSSGRPKIVHRTHSIGSETNSAVSEKFVYTNPMHKHE--KKLSPPNEYGDDLAQHYEGELGDMSDISSELPHDKTDNPLFSSDSNRDGGGSSPTSVAEAARXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXHLAESGAIVEVDSHGASMSDAASTSLASSQSNTSESPLIDQAYSSSFDSDVDQRGGGEVAAEGSPLVGGRNSRGSGGVLSIASETSSRMPFGLSPVAERTDSRGESPGLTTNSSSTTGGVSTVYLARAG--ADGPRGVPWSYGGPDGRGSYSMASDAAXXXXXXXXXXAESVFRPPSPGSVSRPLQPLLAQ--QSPMSCVSGFTSKSNSFAMSSRSSSMASSFASPKAGXXXXXXXAAASRLPPVGLRKGISNESLKAIKITSGGGDAEREAVXXXXXXXXXKVARSLSQEDPRTEAGSEGTAAMGEDELGSL-GVEKIPKSSVSSLSPLAR-----QHNEWRAR---------YGSSQSELKFPEGGXXXX-------XRGSLAASSRMASGMSDARLTSASTLSSFNGESIVSAMPSADARAQSSGATRASPDPASPAGGGGVFGQSDTGSDASADAAAGHGDASGSKGLASALDRRVKSAAVAPSPKRSRSGRAGTGATKSESTVDEGGDEFYDATSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTRAPQMTAGTRMSSSLS-LSRSSSEASSLPSPVFV-PSTS-FQSHHAFTSGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXGVLDGTRGLDQASIVAAEECRDRAIEAGTAAAGAAVASGEVTTEAQLMAAGAVAAAKATKGRAVPDDVRRKAIQAGAXXXXXXXXADVGPTGGGVSNRWSTGTSAVELKSALKKEPSFRSTAEKPRSVSF--AYDSXXXXXXXXXXXXXXXSNRIGGLRQHLADPSRPSGSYRRMES-DSSSLSGESLSPS----FRGSSATGGGDNVSQASFDTNITFSAVSM-----------SSYATATTTSTAYGGGRVXXXXXXXXXXXXXAYSQRSSYSFRHDSS-GSCSESDTDWP 1432
BLAST of mRNA_P-littoralis_Contig771.13.17 vs. uniprot
Match: D8LSN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN4_ECTSI) HSP 1 Score: 274 bits (700), Expect = 1.620e-70 Identity = 418/1259 (33.20%), Postives = 533/1259 (42.34%), Query Frame = 1
Query: 1651 RRGRRRLADFVDVQFEVPA------QATDGNVTGSKQAATLFNSVADPTARVAAADTLGITTADIGFGDLVYYEGAEFEIVNEFDSVDDDEEASVWATVLVAFILLVAMCLCSCCVLCVVTRGDREAGYLGKLGPTFGRATPP---RKLVWRGGKGSAIEGEDSTRVHKSRMTANRSMQPSARGTIVHSTSADSV------KGGFNSAVSGV----SDGTASLEKPFTYTNPMLKSEGSKKTGSPNEYGDDLAQHYERGYSAESS-TSDPPHTQTSNPLFSNPFS----------------------------------ISAGGSSFASAARSGQSRGGXXX-AGTDSQASWNSATTSDDMEPGSPSSSYNGGETEGGAGSSVYDSVSSAGHQHGSRRVGTMSTLSETSSRMPYGLSPVAEKMGEKGESSDM---SSNTTGGGGSVHHARGSG--------SYSGRDSTPTAAIAPRGRGEGSTEFDDEDAEAMLRAPSPGSVKRPLQPLLAQYSQSPVSLSSASAFGSRSGSFASPKERHSVR---AEPQETTSARLDVRF------------DFFCFTCRGSEGQAGRQCT---------------ERGGERKEGRGGAQALPNEGGCSLCGVRGARHARVIERSKLVEFRPPPSHSPFPPRPRPRPCFSCYPLSPNEIK-APGGVAQGTGNFTVPPLRHVRGTSE-RTAAGISEADFRGSGGSKSFVSVSEEGSMGGSSPGAALARNKPPMAGVGTSRAG---SGLSHVSDSASEAXXXXXXXXXXXXXXXTGRSATVEPS-----------------AAIDEDRDVFQSLRQDRAVPTTTXXXXXXXXXXXXXGASKSLRFTSRGRAGRQAAAARRGSGTSGTSAFRDGGSDTHAPVVLTPATSSIESSTPASATAGTRAADDAASAVPPPPAYRSLDYSSADTNASSAVGAAAATSALAAQECRNTAIEAGTXXXXXXXARGEIKSEAQLLAAGXXXXAKATKGRPVPDDVRRKAIQAGAAXXXXXXXQAEFGGHFGSGGP---YSSGGS--DVKSVLKTSSLFRSSS-RPLSVSFVDANSSDEYDDLNPHAGGGGGAGGMRALRQHLADPSQPSGSYRNQDSADSSGFSNESLSPSDTSSFDGMSSYG---APSQASFATGTSMAXXXXXXXXXXXXXXXSSTGTATTAASXXXXXXXXXXXXXXXSQHSA-YSFRRVSSESSLSDSDIERPLTARQQPAAIQRPLSWTSTAE 5043
RR RRRLA+F DVQFEVP ++ +TGSKQAA LFN AD T+ A LGI AD+ FGDL Y+EG EF ++FD +D E AS WATVLVAFIL+ AM LCSCC C+V + E G G+ RK + S IE E V KS MTA+ SM PS +V STS ++ G +V S+ ++++ + F YTNPM K E KK PNEYGDDLA+HYE S +S+ PH +T NPLFS+ + +G + + A S G A + S AS S T+ + + SSS++ G G + S G ++ G +S SETSSRMP+GLSPVAE+ +GES + SS+TTGG +V+ AR SYSG D + ++A G+ +D+DAE++ R PSPGSV RPLQPLLAQ QSP+S S F S+S SFA S+ A P+ A R G A R+ + R E A E G+ + V S L H+ + R Y S +E+K A G R GTS+ R + + + F G +S VS S GA A P A G S G +G +D+A+ +SA V PS + +DED D F A T XXXXXXXXX VL DD R LD +S +AA+ECR+ AIEAGT A GE+ +EAQL+AAG AKATKGR VPDDVRRKAIQAGA XXXXXXX G G GG +S+G S ++KS LK S FRS++ +P SVSF + GG LRQHLADPS+PSGSYR Q+S DSS S ESLSPS + G S+ G + SQASF T ++ + +T T T+ A SQ S+ YSFR +S S S+SD + P +RQ+ A PLS T AE
Sbjct: 401 RRRRRRLAEFEDVQFEVPTPTAGAVESEAAPLTGSKQAADLFNKAADQTSLTGVASALGIDVADLNFGDLAYFEGGEFTFSSDFDQAED-EGASTWATVLVAFILVTAMLLCSCCS-CLVAKHATEKGMDGRXXXXXXXXXXXXXXRKSAVMQERLSTIEEEQGLHVGKSEMTASHSMGPSPHHALVRSTSQEAAAVTRPSSSGKPKSVHRTHSIGSETSSAVSEKFVYTNPMHKHE--KKLSPPNEYGDDLAKHYEGEVGDMSDISSELPH-KTDNPLFSSNSNRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGHLTESDATVEVDSYGASMSDAASTSLASSQSNTSESPLIDQAYSSSFDSDVDHHGGGEVAAEGSSLVGGRNPRGSGGVLSVTSETSSRMPFGLSPVAERTDSRGESPGLTTNSSSTTGGASTVYLARAGADGPRGVPWSYSGPDGGGSYSMASADAA-GAAGAEDDDAESVFRPPSPGSVSRPLQPLLAQ--QSPMSC--VSGFTSKSNSFAMSSRSSSMASSFASPKAGGGAAAASRLPPVGLRKGISNESLKAIKIASGGGDAEREAVXXXXXXXXXXVARSLSQEDRRTEASSEGTAATGEDELGSLGMEKIPRSSVSSLSPLAR-----QHNEWRAR---------YGSSQSELKFAEGXXXXXXXXXXAASSRMASGTSDARLTSASTLSSFNG----ESIVSAMPSEDARARSSGATRASPDPASAAGGGSVFGQSDNGSDASADAAAGHGDASISKGLASALDRRVKSAAVAPSPTHSRSGRAGTGATKSESTVDEDGDEFYD-----ATSTADGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVL----------------------DDT----------RGLDQASI----------------VAAEECRDRAIEAGTAAAGAAVASGEVTTEAQLMAAGAVAAAKATKGRAVPDDVRRKAIQAGAXXXXXXXXXDV--GPPGGGGVSNRWSTGTSAVELKSALKKESSFRSTAEKPRSVSFAYDSXXXXXXXXXXXXXXSSRMGG---LRQHLADPSRPSGSYRRQES-DSSSLSGESLSPS----YQGSSATGGGDSVSQASFDTDSTFSAVSVSSY---------ATATTTSTAYGGGRAGGGRGGDDAYSQRSSSYSFRNDTS-GSCSESDTDWP-PSRQRGAG---PLSATIVAE 1554
BLAST of mRNA_P-littoralis_Contig771.13.17 vs. uniprot
Match: A0A6H5JJT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT3_9PHAE) HSP 1 Score: 197 bits (500), Expect = 6.060e-52 Identity = 124/313 (39.62%), Postives = 165/313 (52.72%), Query Frame = 1
Query: 139 TLAAVVDAAEAAFRRRGSVTLRVEACGLSPRSVMGQRVSVFFTTSMGGIGDARAAQLKEGGAAAEAAGGDVQHMFGVLPSYPARAGRVWGGEK------------RPLASARRRLRGGSEAEGWMNGQQXXXXXXXXXXXXXXXXXXRMVAVELEHWGSAS----------------APMAGTGERRRLQVEDCSSDCLRSEDDPCENWPDCEFGGIGCNAQNDPLCRYCG-SAPYEECTEDSPSADMGPTPSPTELPDREECSSVCLEVGTSFPCYDDPTCLGGDNLVGCNAYEDFFCRFCGF-QDYLDCPD 987
T++ ++ E A RRR S+T R+EACG+ P SVMG+ SV F GG+ AA A A GG ++HMFGVLP+Y AGR G A+ RR LR G+ + + ++ V+ +A+ A RR+LQ+EDCS+DCL SE + C+N CE GGIGCNAQ+DPLC++C APY EC E+ P+ P+P+PT PD ECSS CLE FPC+DDP+C N +GCNA DF+CRFCGF ++++DCPD
Sbjct: 10 TVSIRIEDTEEAHRRRDSITFRLEACGVGPSSVMGRGASV-FVIEPGGVSSGAAAP-----APAPGRGGTLRHMFGVLPTYL--AGRRLSGRGPEQLWWQLQSLGAAAAATRRGLRSGAVGDQGVGSRRAEAAERALEPAASAALSYTDGGVDASATAAAAEANADELGDIASLAAVAASRAAARRRKLQLEDCSADCLTSETERCQNNEMCETGGIGCNAQDDPLCQFCDLGAPYVECDEERPTEAPAPSPAPTLDPDYVECSSRCLE-SEDFPCFDDPSCPRDGNGIGCNATGDFYCRFCGFLEEFVDCPD 313
BLAST of mRNA_P-littoralis_Contig771.13.17 vs. uniprot
Match: X6N068_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N068_RETFI) HSP 1 Score: 66.2 bits (160), Expect = 4.800e-7 Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 1
Query: 688 CEFGGIGCNAQNDPLCRYCGSAPYEECTEDSPSADMGPTPSPTELPDREECSSVCLEVGTSFPCYDDPTCLGGDNLVGCNAYEDFFCRFCGFQDYLD--CPD 987
C+ G +GCNA ++ CRYCGS Y T P E+ S+ C G CY D TC D ++GCNA + CR+CG Y++ CP+
Sbjct: 33 CKDGMLGCNANSNLTCRYCGSGSYVNIT----------------CP--EKLSNCCKSAGGQVSCYVDKTCK--DGMLGCNANSNLTCRYCGSGSYVNITCPE 114 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig771.13.17 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig771.13.17 >prot_P-littoralis_Contig771.13.17 ID=prot_P-littoralis_Contig771.13.17|Name=mRNA_P-littoralis_Contig771.13.17|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1757bp GGVRARWWRGVWQRVRGGRGTGAGPAGARADNAGSVIKGGITAAVDTLAAback to top mRNA from alignment at P-littoralis_Contig771:84976..104057- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig771.13.17 ID=mRNA_P-littoralis_Contig771.13.17|Name=mRNA_P-littoralis_Contig771.13.17|organism=Pylaiella littoralis U1_48|type=mRNA|length=19082bp|location=Sequence derived from alignment at P-littoralis_Contig771:84976..104057- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig771:84976..104057- >mRNA_P-littoralis_Contig771.13.17 ID=mRNA_P-littoralis_Contig771.13.17|Name=mRNA_P-littoralis_Contig771.13.17|organism=Pylaiella littoralis U1_48|type=CDS|length=5271bp|location=Sequence derived from alignment at P-littoralis_Contig771:84976..104057- (Pylaiella littoralis U1_48)back to top |