mRNA_P-littoralis_Contig771.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig771.5.1
Unique NamemRNA_P-littoralis_Contig771.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig771.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig771contigP-littoralis_Contig771:42192..43311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.402856-CDS-P-littoralis_Contig771:42191..422701680791593.402856-CDS-P-littoralis_Contig771:42191..42270Pylaiella littoralis U1_48CDSP-littoralis_Contig771 42192..42270 -
1680791593.4137661-CDS-P-littoralis_Contig771:42673..427961680791593.4137661-CDS-P-littoralis_Contig771:42673..42796Pylaiella littoralis U1_48CDSP-littoralis_Contig771 42674..42796 -
1680791593.430207-CDS-P-littoralis_Contig771:43216..433111680791593.430207-CDS-P-littoralis_Contig771:43216..43311Pylaiella littoralis U1_48CDSP-littoralis_Contig771 43217..43311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig771.5.1prot_P-littoralis_Contig771.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig771 42192..43311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig771.5.1

>prot_P-littoralis_Contig771.5.1 ID=prot_P-littoralis_Contig771.5.1|Name=mRNA_P-littoralis_Contig771.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MPFSLPPALPSRSQQYCRRVHGLFIWGNCRISGGCNRQGEGEGTSSPCCF
CCADGELTRQQHSSGGSFSPRCRCGCFAAEHAPHHPTQDPSPCCEPLRH
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mRNA from alignment at P-littoralis_Contig771:42192..43311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig771.5.1 ID=mRNA_P-littoralis_Contig771.5.1|Name=mRNA_P-littoralis_Contig771.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1120bp|location=Sequence derived from alignment at P-littoralis_Contig771:42192..43311- (Pylaiella littoralis U1_48)
ATGCCTTTCAGCTTGCCACCTGCTTTGCCTTCCCGAAGTCAACAATACTG
TCGGCGTGTGCACGGGCTGTTCATCTGGGGCAACTGCCGCATCAGGTAAG
CGAAGACATAGTACTCAGTCTTGTGGATGGGGATTTTCCGAACATAGGAC
GCGGTCTCTCGGCATCGATCCAGGTAATATACTCGTAGTCGCCTGTGTCC
TGAAACACGAGTTTGAAAATAAAAAACGTCGACCTACATTCGCGGGTCCC
TGCAATACACACAGCATGCAGTACTTCAGGCTAGGATACAAGCGCGTGCT
TTATCACACAAGCTTAGGGTTCGTGTAAGCGGTGTAGCCCTCACCACTCG
CATTGACCCGCGCACTGGGAAACCCACGTACTCCGGTGATTTCTGCTTTG
ACTTCTCTTTACTTTTCGCGCCCCAATTGGTTGGTGTTTGGTGTTCAAAA
ATGTCGATTTATGCCATGCATCCCTCTGACGAAACTCTACACGTCACATG
CGTATCTTTTCACAGCGGTGGATGTAACCGGCAAGGGGAAGGGGAAGGGA
CCAGCTCTCCCTGCTGCTTTTGTTGCGCAGACGGCGAACTCACCCGCCAA
CAGCACTCCTCAGGCGGCAGCTTCAGCCCTAGGTGCAGGTAATATACTCA
TATACTTAGTACTTGTATTAAAATGGAACTTGATTTTTCAAAAGTCGAGA
AAATTTCAACGTCTCTTCGGTTGTTGACCGTATGATAGTTTTTTTTGCTT
TTGTCACATGTGCTTTTAAGCACTTCGTAAATTATACTCAGAGTATTTGC
GTAGAACTTGAGGTTAGGGTCAAAGAGGTCACCTCCGTTGGAATACGGCG
GTGAAACCGCAAGGAAGTTGTTGTTTACTCTCGAAAACCGAAATCGCCCT
GTATTCCTGTGACAAACCTTCACAGTGAGTTTGACTCTTTTGTAGCCTTC
TGTGTATCCTTCTGTGTTCGGGTCTTATTTTCGCTTTGACCACAGCAGTA
GAAACATTCTTTCCGCCCCCCGCTCCTCAACCGTCGTCCAGGTGCGGCTG
TTTCGCAGCCGAACACGCTCCCCACCACCCCACTCAAGACCCCAGCCCCT
GTTGTGAACCCCTACGCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig771:42192..43311-

>mRNA_P-littoralis_Contig771.5.1 ID=mRNA_P-littoralis_Contig771.5.1|Name=mRNA_P-littoralis_Contig771.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig771:42192..43311- (Pylaiella littoralis U1_48)
ATGCCTTTCAGCTTGCCACCTGCTTTGCCTTCCCGAAGTCAACAATACTG
TCGGCGTGTGCACGGGCTGTTCATCTGGGGCAACTGCCGCATCAGCGGTG
GATGTAACCGGCAAGGGGAAGGGGAAGGGACCAGCTCTCCCTGCTGCTTT
TGTTGCGCAGACGGCGAACTCACCCGCCAACAGCACTCCTCAGGCGGCAG
CTTCAGCCCTAGGTGCAGGTGCGGCTGTTTCGCAGCCGAACACGCTCCCC
ACCACCCCACTCAAGACCCCAGCCCCTGTTGTGAACCCCTACGCCAC
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