mRNA_P-littoralis_Contig770.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig770.9.1
Unique NamemRNA_P-littoralis_Contig770.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig770.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig770contigP-littoralis_Contig770:89972..91891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categoryother localisation
Exons5
Cds size261
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig770.9.1prot_P-littoralis_Contig770.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig770 90310..91891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.1820285-UTR-P-littoralis_Contig770:89971..900771680791593.1820285-UTR-P-littoralis_Contig770:89971..90077Pylaiella littoralis U1_48UTRP-littoralis_Contig770 89972..90077 +
1680791593.1947722-UTR-P-littoralis_Contig770:90252..903091680791593.1947722-UTR-P-littoralis_Contig770:90252..90309Pylaiella littoralis U1_48UTRP-littoralis_Contig770 90253..90309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.2061152-CDS-P-littoralis_Contig770:90309..903121680791593.2061152-CDS-P-littoralis_Contig770:90309..90312Pylaiella littoralis U1_48CDSP-littoralis_Contig770 90310..90312 +
1680791593.2192125-CDS-P-littoralis_Contig770:91016..911091680791593.2192125-CDS-P-littoralis_Contig770:91016..91109Pylaiella littoralis U1_48CDSP-littoralis_Contig770 91017..91109 +
1680791593.2293262-CDS-P-littoralis_Contig770:91492..915821680791593.2293262-CDS-P-littoralis_Contig770:91492..91582Pylaiella littoralis U1_48CDSP-littoralis_Contig770 91493..91582 +
1680791593.2400312-CDS-P-littoralis_Contig770:91816..918911680791593.2400312-CDS-P-littoralis_Contig770:91816..91891Pylaiella littoralis U1_48CDSP-littoralis_Contig770 91817..91891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig770.9.1

>prot_P-littoralis_Contig770.9.1 ID=prot_P-littoralis_Contig770.9.1|Name=mRNA_P-littoralis_Contig770.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MDGANGAAAESEAVALALAKNTEEEEEQKADEASARMRALEEAVSAKARK
KANNKAKRAAKKAQKQQQQQQQQQEAARAEELAVIQR
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mRNA from alignment at P-littoralis_Contig770:89972..91891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig770.9.1 ID=mRNA_P-littoralis_Contig770.9.1|Name=mRNA_P-littoralis_Contig770.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1920bp|location=Sequence derived from alignment at P-littoralis_Contig770:89972..91891+ (Pylaiella littoralis U1_48)
GGGTCCCGACGCCAACGGGCGGGCGAGAGAGGGGTACATGTTCGACTTCC
CCTCATTCAACCACTTCGTTCCGCTTCTACCCTCGGCGGACGCCGCCGAC
CACCAGGCGAGATAATTACTCTTGTAGTGCTAAAACCCATCCAGCAGATG
AAAAAGTTCATGTTCTTGGGACACCGTTGTCGTCAATACCCAGATATCAG
CTCAGTTGTTCGATGTTAGACTGTGAAATCCGCATTCATATTTGATTGTA
TTTCGTACGCTCATTGTCTTTCATATTTCAGCGCCAGGAAGAAGAACTGG
AGGCGCTCGGGACGGCTCAGGTCACGTAACAGGCGTCCATGGTATGTATG
GTATTCTGGAAATTTGCATATAGAACGATACGAGATCGATGTATTACCGG
AGCAGGTACGCGTGTGCGTGTGGTGACGGTGTGTTTTTGGTGATCCCTAT
TGTGCCTCTCCATTGGGAAGTTGTCCAGCAGTATGACTGTTTTTGTGGCA
GCGTACTGTGTGTTTGAGGCGTTCAGTCTCCCCGTCGTGCTCTTTCATAT
GTACGTTGTAGGTGCCCTGTACGGGGCACCTACAAACGCAAAATATGTAT
ACGTTTCGATGGGCTAATCACGAATTGTATGGGACGTAATTCACGATGAA
TTATCCAGATTACTATTGAAAAATTTTGGAAACATGCTTGAAAAGACGAG
CATCGACACGACTACACGCAAAACCGTAGACCGTGGGGTTGAACTTGATC
GTCATCATTCCCACAACGAAAACAACTTCAAGTGCCGACATTTGTTTCGT
TTCCACACTCAATTCTTCCTGTTTGCGGGGCCACCTGACAGGCAAGTGCA
TTCAAGGTTCTTGGTTTGGTCTGGATGTCAGGTGTATACCGAACTTTTGT
CTACTACTACCTTGTGTCACACTCGCGAAGCAACTAAAGAATCAGTTTTT
TTCAATATTCTCATTGAAAAACATTTCCAACACATGTATTCCCCTTCGAA
TTTACCTGCGCCTTGTTTGCCTTCTTTTATGTTTTTATTTGTCAGGACGG
CGCAAACGGAGCGGCGGCGGAGAGTGAGGCAGTTGCGCTAGCCCTCGCGA
AGAATACCGAAGAGGAGGAGGAGCAGAAAGCTGATGAGGTTAGTGGTTTC
GTACGACATGTTATTGGTGAGCGCAACTTGTTCGCATCGCTTATTTACCC
CGTGAGAATGATTCAAGGATCGTTTTAGCGTCGCAGCAGAGACCCACAGC
AGAGACACACAGGCCGGAGAGAAGCGTGAGGCGTCAGCCCTTTCTCGAAA
CAGCCCTTTCTCAAAAAAGGAGCCCCATGTATCGACCATAACATACCCCA
GGAAGTCTCCACACACGGTGCTATGCAACAGTGAAAGACAAAAAATCTAC
AAATCCGCGCTCTTACGGACACAATGATGTGGAAGTGTAGAAGACTTGTC
GTTCCGGCACTCCGATTTTCCTAAATGCCTCCTGCGTTTATGCTCGGCTG
ACACTTGTTTTTGTAATTCAGGCGTCAGCCAGGATGCGCGCGTTGGAGGA
GGCGGTCAGTGCCAAAGCCCGCAAGAAAGCTAACAATAAAGCGAAAAGAG
CAGCAAAGAAGGTGTTTGTGTACGTGTTTTCATCAAGATAAGCTGGTGAA
GATTTGCACGTCACATGCCGCAAAGGGTCAACCTTAACCCTACTCATACA
GAGGAAAATTTCAAGCATTACACTGGTGCTAGTCGCATATGGAAGACGGT
TCTTGATTATTGAATTTAGCAACGAGTCGCAACAGCTCTCAAAATGTCTG
CGTCCTCCACTGCCGACTGCTTGATGCACCATTGAATGCCCACAGGCGCA
GAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGCGGCTAGAGCAGAGG
AACTAGCGGTCATTCAGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig770:89972..91891+

>mRNA_P-littoralis_Contig770.9.1 ID=mRNA_P-littoralis_Contig770.9.1|Name=mRNA_P-littoralis_Contig770.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig770:89972..91891+ (Pylaiella littoralis U1_48)
ATGGACGGCGCAAACGGAGCGGCGGCGGAGAGTGAGGCAGTTGCGCTAGC
CCTCGCGAAGAATACCGAAGAGGAGGAGGAGCAGAAAGCTGATGAGGCGT
CAGCCAGGATGCGCGCGTTGGAGGAGGCGGTCAGTGCCAAAGCCCGCAAG
AAAGCTAACAATAAAGCGAAAAGAGCAGCAAAGAAGGCGCAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGGAGGCGGCTAGAGCAGAGGAACTAGCGG
TCATTCAGCGT
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