mRNA_P-littoralis_Contig77.116.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.116.1
Unique NamemRNA_P-littoralis_Contig77.116.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:476715..477126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3R3
PFAMsLRR_1,LRR_8
Model size413
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000558
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size411
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791591.5604792-CDS-P-littoralis_Contig77:476714..4771251680791591.5604792-CDS-P-littoralis_Contig77:476714..477125Pylaiella littoralis U1_48CDSP-littoralis_Contig77 476715..477125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.116.1prot_P-littoralis_Contig77.116.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 476715..477125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.116.1

>prot_P-littoralis_Contig77.116.1 ID=prot_P-littoralis_Contig77.116.1|Name=mRNA_P-littoralis_Contig77.116.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
ARASSVPAAAPTAHASSAATPTLPIRPDWQTATVVDSSSSLEELPCMGTL
GLEGTERKVDPARVFFSDGLAFRDTTAADSTIRCYHLVTQVQPLGGGLPS
FYQASAQASDIDRGVSGVGTAQFRTRLARSVVAECVV
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mRNA from alignment at P-littoralis_Contig77:476715..477126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.116.1 ID=mRNA_P-littoralis_Contig77.116.1|Name=mRNA_P-littoralis_Contig77.116.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=412bp|location=Sequence derived from alignment at P-littoralis_Contig77:476715..477126+ (Pylaiella littoralis U1_48)
GCCCGCGCCTCATCGGTGCCTGCAGCCGCGCCTACAGCCCATGCATCGTC
CGCGGCCACGCCCACCCTCCCCATCAGGCCGGATTGGCAGACGGCGACGG
TGGTCGACTCCTCCTCCTCCTTAGAGGAACTCCCGTGCATGGGTACCCTC
GGTCTGGAGGGTACAGAAAGAAAAGTGGACCCAGCTCGGGTGTTCTTTTC
TGACGGACTGGCCTTTAGGGACACGACTGCGGCCGACAGCACCATCCGCT
GCTACCACTTGGTGACCCAAGTGCAGCCTCTGGGCGGCGGCCTGCCCTCC
TTTTACCAGGCGTCAGCGCAGGCGTCGGATATCGACCGTGGGGTGAGCGG
CGTAGGGACGGCCCAGTTTAGGACCCGGCTGGCGAGGTCCGTCGTCGCCG
AATGTGTCGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:476715..477126+

>mRNA_P-littoralis_Contig77.116.1 ID=mRNA_P-littoralis_Contig77.116.1|Name=mRNA_P-littoralis_Contig77.116.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig77:476715..477126+ (Pylaiella littoralis U1_48)
GCCCGCGCCTCATCGGTGCCTGCAGCCGCGCCTACAGCCCATGCATCGTC
CGCGGCCACGCCCACCCTCCCCATCAGGCCGGATTGGCAGACGGCGACGG
TGGTCGACTCCTCCTCCTCCTTAGAGGAACTCCCGTGCATGGGTACCCTC
GGTCTGGAGGGTACAGAAAGAAAAGTGGACCCAGCTCGGGTGTTCTTTTC
TGACGGACTGGCCTTTAGGGACACGACTGCGGCCGACAGCACCATCCGCT
GCTACCACTTGGTGACCCAAGTGCAGCCTCTGGGCGGCGGCCTGCCCTCC
TTTTACCAGGCGTCAGCGCAGGCGTCGGATATCGACCGTGGGGTGAGCGG
CGTAGGGACGGCCCAGTTTAGGACCCGGCTGGCGAGGTCCGTCGTCGCCG
AATGTGTCGTT
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