prot_P-littoralis_Contig77.96.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig77.96.1
Unique Nameprot_P-littoralis_Contig77.96.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length287
Homology
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: D7G712_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G712_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 2.030e-82
Identity = 168/284 (59.15%), Postives = 191/284 (67.25%), Query Frame = 0
Query:    4 SPSPKRAKRLQPASGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVL-GQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQ 286
            SP  KRA+R+ P      E  A   R  QV LK LQIEGFKTFRDS+ ID+CPGW+       P P+N   + APSPLT+VFGGNGAGKS++FD VFFVL GQSSK IRSS GS+QLVNDQSVLQKGP+A ASVTITFQK   ++ M+T+ +                                    QGK CSRAAMMQ LNAFVGADMGDVDRY+LKQGSTMVC R+GKELLSFIERLAGT +LK + E+VQ  LDDLRE  L LE DVQ+S   RK LQPQ
Sbjct:    3 SPRAKRARRIPPGCSKTPEATAVGSRE-QVLLKRLQIEGFKTFRDSEVIDVCPGWQ-------PTPYNEEESLAPSPLTVVFGGNGAGKSALFDGVFFVLSGQSSKCIRSSRGSAQLVNDQSVLQKGPDAFASVTITFQKAGAWQGMDTDGE------------------------------------QGKACSRAAMMQALNAFVGADMGDVDRYLLKQGSTMVCHRDGKELLSFIERLAGTTQLKTQAEQVQTDLDDLREDTLSLEVDVQSSAHARKGLQPQ 242          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A835YP97_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP97_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.340e-26
Identity = 90/258 (34.88%), Postives = 133/258 (51.55%), Query Frame = 0
Query:   29 RPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQ 286
            +P +V LK + + GFK+FRD   +D+CP     + P     + G  A      T V GGNG GKS++ DA+ FVLG ++  +RS   ++QL+ND+S        SASV+ITFQ++    D            G T         L V RSV    GTSTY+L G   +R  M++ ++ F G  M + DR+V++QG T++ +R   ELL++ E LAGT  L+ +       L+  +   L  E   Q     R +L+PQ
Sbjct:   78 QPSRVVLKKVIVRGFKSFRDEVVVDLCP-----ESPSAATAFRGTRAC----FTCVLGGNGVGKSALVDAILFVLGHAANQLRSQK-AAQLINDES-------QSASVSITFQRLGSEGD------------GGT---------LVVSRSVVSS-GTSTYALNGSAVARGHMLEEVSRFCGCSMANPDRFVMRQGVTLLAQRGTAELLAYFEELAGTGTLRDDIAAANKKLEQAQTSLLAAEERSQDLAERRARLRPQ 296          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: X0VJL6_9ZZZZ (SMC_N domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0VJL6_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 2.210e-6
Identity = 62/224 (27.68%), Postives = 95/224 (42.41%), Query Frame = 0
Query:   33 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEE 254
            +FLK L++ GFK+F    +I+  PG                       +TIV G NG GKS++FDA+ +VLG QS+KS+R+S  +  + N  S  +  P   A V++TF     Y  ++                     E+ V R +    G S Y L    C    +  ++  F+   MG     +++QG   ++   +  E     E  AG AK K   EE
Sbjct:    1 MFLKNLEMVGFKSFATKTTIEFFPG-----------------------ITIVVGPNGCGKSNIFDAIRWVLGEQSAKSLRASRMADVIFNGSSSYK--PLGFAQVSLTFSNEDRYLPLD-------------------FSEVVVTRRLFR-TGESEYLLNKVPCR---LRDIVELFMDTGMGTDAYSIMEQGKVDLIINSKPAERRYIFEEAAGIAKYKLRKEE 176          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A5C7WA38_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Moranbacteria bacterium TaxID=2045217 RepID=A0A5C7WA38_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.100e-6
Identity = 72/241 (29.88%), Postives = 111/241 (46.06%), Query Frame = 0
Query:   33 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQG-STMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEA 271
            +FLK L+I GFK+F +  S+D  P     D+       NG    A   +T + G NG+GKS+V DA+ + +G QSSK++R  G  S+ V      +K    +ASVT+ F            SD  + ++ A         E+S+ R V +  G S Y + G   SR  ++ V++    A +G     V+ QG S  V      E  +  E  AG  + + E E     L+  RE  + ++A
Sbjct:    9 MFLKKLEINGFKSFANRTSLDFLP---DCDLA------NG----ATCGITAIVGPNGSGKSNVADAIRWAIGEQSSKNLR--GKKSEDVIFAGTDKKSRLGTASVTLHFDN----------SDKRIPIEFA---------EVSIARKV-YRSGESEYLING---SRVRLIDVVDLLAKAGIGKDSYCVITQGMSDAVLNATATERRAIFEDAAGVKQYQIEKERALRKLESTRENLVRVDA 211          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A5A8DC36_CAFRO (SMC hinge domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DC36_CAFRO)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-5
Identity = 74/267 (27.72%), Postives = 122/267 (45.69%), Query Frame = 0
Query:   17 SGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLK-----AETEEVQIALDDL--REQALGLEADVQTS 276
            SGG   + AA+   G+  L  L++E FK++  S +I     +RS                     + V G NGAGKS+V DA+ FVLG S+K +R S  +  + N+ +V   G   S+       +           +DE  V G  +      +EL   RSV    G   + +QG+V + A   + L + V  D    +  V +   T + RR  +EL+ ++E +AG+A+L+     AE E+ +   + +  + QA G   +V+T+
Sbjct:  287 SGGETSLRAAMS--GR--LDRLELENFKSYHGSHTIGP---FRSF--------------------SCVCGPNGAGKSNVMDAICFVLGLSAKHMRGSALTDLIYNNSAVAASGDADSSGREGGEDRAVVRMVYVVGEEDEPQVAGGVSPG----EELVFSRSVTRSGG-GEFRVQGRVVTAAQYKRTLRS-VNIDTDSREFLVFQGDVTSLARRSPRELMDYLEVVAGSARLRPAFEAAEAEKAKAQDESIFAQRQAKGARLEVRTA 520          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A813ABU5_9DINO (SMC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ABU5_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 1.740e-5
Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 0
Query:   81 LTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLK-----AETEEVQIALDDL--REQALGLEADVQTS 276
             + V G NGAGKS+V DA+ FVLG S+K +R S  +  + N+ +V   G   S+       +           +DE  V G  +      +EL   RSV    G   + +QG+V + A   + L + V  D    +  V +   T + RR  +EL+ ++E +AG+A+L+     AE E+ +   + +  + QA G   +V+T+
Sbjct:   28 FSCVCGPNGAGKSNVMDAICFVLGLSAKHMRGSALTDLIYNNSAVAASGDADSSGREGGEDRAVVRMVYVVGEEDEPQVAGGVSPG----EELVFSRSVTRSGG-GEFRVQGRVVTAAQYKRTLRS-VNIDTDSREFLVFQGDVTSLARRSPRELMDYLEVVAGSARLRPAFEAAEAEKAKAQDESIFAQRQAKGARLEVRTA 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G712_ECTSI2.030e-8259.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YP97_9STRA3.340e-2634.88RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371... [more]
X0VJL6_9ZZZZ2.210e-627.68SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A5C7WA38_9BACT3.100e-629.88SMC_N domain-containing protein n=1 Tax=Candidatus... [more]
A0A5A8DC36_CAFRO1.550e-527.72SMC hinge domain-containing protein n=3 Tax=Cafete... [more]
A0A813ABU5_9DINO1.740e-529.06SMC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 245..272
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 34..274
e-value: 1.2E-26
score: 96.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 35..278
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 77..206
e-value: 5.0E-14
score: 52.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:312785..315664 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.96.1mRNA_P-littoralis_Contig77.96.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig77 312574..315664 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig77.96.1 ID=prot_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MAGSPSPKRAKRLQPASGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQ
SIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVF
FVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDME
TESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAM
MQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKA
ETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003395RecF/RecN/SMC_N