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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 876 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 645 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789502.949063-UTR-P-littoralis_Contig1195:28602..28808 | 1680789502.949063-UTR-P-littoralis_Contig1195:28602..28808 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1195 28603..28808 + |
| 1680789502.9574602-UTR-P-littoralis_Contig1195:36200..36224 | 1680789502.9574602-UTR-P-littoralis_Contig1195:36200..36224 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1195 36201..36224 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789502.967114-CDS-P-littoralis_Contig1195:36224..36869 | 1680789502.967114-CDS-P-littoralis_Contig1195:36224..36869 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1195 36225..36869 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1195.5.2 >prot_P-littoralis_Contig1195.5.2 ID=prot_P-littoralis_Contig1195.5.2|Name=mRNA_P-littoralis_Contig1195.5.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
MSDSSKTSSSEAAPAFMAEAAARNTAPAGMAEAAPAPAPDSRGIAAILHP
YSELSHTQRTAYSEAMWSGFPDSIKAGLCNPAHAARLHQAAESDAQQAQT
AAKAILVEAANGNHQAAQAQLRSTEHTQATLAAQIAEGKRHMQQLIATAS
ANAAQLDNDRACTEAAAAKAHTAVTGQSLPPILAPASSAHGGRSLFHRSR
SPSRRTPAAGPASGA back to topmRNA from alignment at P-littoralis_Contig1195:28603..36869+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1195.5.2 ID=mRNA_P-littoralis_Contig1195.5.2|Name=mRNA_P-littoralis_Contig1195.5.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8267bp|location=Sequence derived from alignment at P-littoralis_Contig1195:28603..36869+ (Pylaiella littoralis U1_48)
CGTGCGAGCGGAAGCGAGCCGTCCCGCACGCACCCGCTTCACGCCCCCTC
TCGCTCACAACCCAATCTGGAGGAGCAAGCGAGAAGGAGCTTGGTAACAA
TCAAGAGAGAAACGACACATCAGTTCAGCTTGCGTTGCAGTGATCACACC
ACGTTCGACACGAGAGAATTTCATCACATTTGGCGCCACGGCAAGCAACG
TCCACGGTGAGCTGTCTGTCGTCTTATTATCTCTTCTCTGTTCCTGAGCT
CCTTCGACCGCTCCTCCCCCCCCGCCTTTTGCTTTCAGTTCGTACTGGTT
TCAGTACAGCCACTGCTGAAACATTTTGTTCTTAGTATTTCCAGTATAAA
CTGGTCCGCTGTCTTGGTAGTGTCATATATATATTTTTTTCGTGATCGAA
CATCTGAGCACGTACCGAGATGTCTTCGGACTCAGCTTCTTCCAGCCCTG
TGCACAACCGTACTAGCAACAGCAGTGGTAGCCCGGCGAGTGCCACGGTA
TCGCTTGCTGCTTCATCTAGTCACGGTAGTGAGCTTGACAGTGTGCTCTC
GCTTGATGCTGAAAACTTAGAGTCGCTTCAGCATGAACCTGCTGCAGCCG
ACCACAGGATGAGTTCCGTTGAGTTGCACACACACAGGCAGTCACCCCCA
AACCATGGCCACGGCTTCGCAAGCCTCAGCCATGAGTAGTGTACTGCCTC
TTGCGGTAGTGCCTCCAATTGCTGTAAAATCAGGCCCTGTTGTACAGGCT
AGTTCAGCACATCCGTCGGTTTCAGCAATGGCCTCTGCCGCCGTATCTGA
TCATGTACCTGTATCGGTCGATACAGCCTCTACTACTGCAGTACTGCTGT
TAGAAAATTCCGACACTACTGCTGTACGATCTGGAATGAATGATGATGAT
ACTACTGCAGTACTGCTGTTAGAAAATTCCGACACTACTGCTGCACGATC
TGGAATGGATGAAACTACTGCAGTTTTATCACACACACTCTCCCTCGAGC
ACAGGTTCGAGAGCTCAAACACAACAATGCTTGACTCGGTTCTTGAAACA
CTCCGTGAGCTCAGCACCTCACCCGACGCCTCGGGATCTCCGGACCCATC
CGAGTCTCCTCCTTCGGGATCAGGGGGAAAGTCGGCTGCATTCTCGCGCC
CTTCCCCAACAACTGTTAGGGCTGCGCCTGACCCCCCTTTTTGAGGGTAA
AATATGTCCGGAGTTCGTTCCGAAAATGCTGAATAGATTTATTTTAGCCA
ATCATATAACAACATTTTGAGTGACGTTTTCATCTGTTGGAGTCGAAGAG
CCCAAAGAACAAACCAAAGAACGGCGAGTACGTGTGTGTGCCGGTGCTGC
TGCTGCTCTCACGATTTTCTCTCAAGCGTTCTAGAGGCGCGATGCTGATG
AAGCAGCAGTAACAGCAGCACTAGCAGTGTGCACTGCTGTGCAAAGCAGC
CGCCTTGATTCAACAAGCAGCAGTAGCCAGATCACACCACCAGTGGGCCG
CCATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGAGCAACAAT
CAATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTGCTGCTTCTGC
TTTCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTTGCACATCC
TGCACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTCTTCATGGGCCCC
CTCACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTCGTCGCTTT
ACTTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATCTTGTATTT
CATGGAAAAGATTTCAAAACCTGGTGTTAGGAAGCAAAGGGGTCTTGTGG
AAAACAAAATTCATCAGGCCCGCCGAAACGCGGTGGATGGTGATTTGGGA
GGGCGCAGCCATTCTTGAGGAACGCTGGGAGCAGGTCCGGTGGCTGTTTG
TGGAGTGGGCTGCCAAGGTTCTACTTCGCACCCCGTTTATGTCGTACTGG
TTCAAGGCGACGTGCATGCTCCAAAATCCTCTCATCCGAGTACACGCTAA
GTTTTGTGGTGCCCTGCACAAGGCGATCCTGAGTTGGGCATACAACTGGC
TGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAGTACCGAAG
CGGCTGCCACCTGGGATGCGATTGGCCGAAGTACCTGACTTCTCCCTCTT
GTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGGAAGTATTTTC
CTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGAAGAGGTGAAA
AAATGATTTCCCAGCAGCAGCTGTTTTTTATCTGAACAAATGAATGAAAA
AATGTTTTTACAGCAGTCTGAATTTGACTGAAACAAAGAGGGAAAAATGA
TTTTTTTCCAAATCAAGAAAGAGAAGGCTGAGCAAAACTTTTTGCGGAAC
ATCTTCTGCTGCTCTTTGCCTGCTCTCTTTCTCCGCTATCTCTGTCGTCT
CCTGCTCGCGAGCGCCGGCTCGCATGCGTTGTGACTGGACTTTCACTACC
ACCGTTAGCAACCCTCACGAGTTTCCTGTATTTCGCCTACCCCTAAGTTC
TCTATTCTCCTGACGCGTGCTGCTCGACCAGTTCGAGGCATTTTTGCAAA
ATTTCGAAGAAGGTGGCGGCTTTTCTTGGGAGATGGAGCAGCGGTGGATC
AAATGGACGGACAGGCACCAGCACCTTCCCCTCAGCATGGCGCGCCTGGG
GTGTAGTTCTTTTTACGAAGGAAAGTGGGTTGGGTCGGAGAAGGCTTTTG
AGCATGCTGTAGGGCAGGAGTTTGCGCGGGCTTTACTGGTGGTCCTTTGG
CCTGACGCATACCAGAACGTGGAGTGGGTGAGATGGGATGAAGAACATGA
TTTCCGTGAAATCCTTGCAAACGACCTTGCAACGGCACCAACGCAGAGAG
AGAAGGATGAGCTCACTCTAGGCATGTTTTCAAAGTTGAACGATGAGACA
GAGTTCAGACAAGAAGTCGAGCGGTATGCCGCATCCGCGCGAGGCAAGGC
AGAGGTTGTGAACGATGATAACGATAAGGGTAATCCATCACCTCGTGCTT
CAAGCTTTCCTTTGCTGTGGACTTTTCCTTTGCTCTACGAATGGTCATGC
CACCTGTTCTTTTTTGCGCCGATTCACCAGCAACTTGTCGAGAGCGTGTT
TTCCAAGTATGATACGTGCACAAAGCCGTGCGATTCGAGAGAGATTGACA
TCGTTCGCCTGGGTCAGTTCTCATCAGCTCAGTCAAGAAAGATACAGAGG
GCTCACGCCTCCAACTCCGAAATCCGGCAAGCAGGAGCCAAGGCAATCAA
GGTTGCTCGAGAGTTGAGTAAAGCTGCTTCTACCGCAGTTCCGTGCGAGC
GACAGCTTCGCAAACGATCACACGACGTCACCGCATTCTTGAAAGGCGTC
AATGACGAGGCTAGGTTTGGGTCGGAATGGCTTTTTGCAGGAATTGCAGA
GGAGTCTGAGTCTGAGAAGTCAGCAAAGTCAGACGATCTCAGCGAGTCGT
CGGGCGATGACGAGTGACTGGTGTGATCTGTAATACGTAAGTACAACAAA
GAGCCACGGCAATATGACACTTTTGCGAGTGTAAAACTCATCATCAAAGT
TTTTTTCAGCATGGCATGATACGATATTACGCACACGACGGCATACAGCA
GCCGCCACCCACTTCTGAGTCTGAGCATGCCATGCACTCGGTTGGGGAAA
TGGGCAGTTGCTACCGCTGAAGGCTTGAGCAAAAGAACGCCGCCAATTGA
GCAGCGGCGGCAGCAGCACACGTGCTGCTTCGCGGAGCAATGATTTGTGT
GATATTCAAAAGCTTCTCATTTTTGTCTTCTCATTTTGTTTCTACCAAGC
AGAGAAGAAAGAGTCCGAGCTCAACGAAAAATTCAAGCTCAACAAGTCAC
ATCTGAAACAGAGAGGACTCAAGCATACCTGGACAGCAGTCAAACGCAGG
CCCTCGCGAATGCCAGCGGCTATCCGTAGTATGGCAGCAGCAGTCAACAA
TTTACAAGTGGTGCCTACCCAAATGATGTCTTAGCAGCCTGCGCATTTCA
GAGCAGAGCAGGCCATCCTGCTACAATGAGTCCAGGAAAGTAGTGCCGAA
AAAAATGAGTAGGGCAACAACAAAAATGCACGGGCCACGAATTTCTCACA
GCTATCTGTCTGCAGCGAGACTCGCTCCATCGCTTCGTTCACCCCGACCC
CCACCCCTCCGTGCACTGCTGTCTTCCCGCCCACGGCCTCTACTTCGCCC
ACGTCCCCTCCCCCGACCGCTAGCTGGCGCGCGTGCTGCGCGCCCTCTCC
CTCTTGCTGCTGCACGCCCTCTCCCTCTTGCTGGTGACACTCCGCGACCT
CGAACATTTCTTGCTGATGCTGCTGCTGCCGCTCTCCCTCCGTTTGTTCG
CCCGCCTCGTTGGCCGCGACCTCGGCCACGGGTCGCGGCCAAGGTGTCCT
CCCCCCTAAGCTTCTGCTGCAGCTTGACAACGCAACCCTCTTTTGCGCCA
GAGACAGATGCGGTGTTGTCGGAGAGGACGTACATAACTTGGCTGCGAGG
GTACTTCAACACATTAACGATCGTATCGAAAAACAAAGCTGCTTGGGTCT
CCGCCGTTTTGTCTTTCATGCTGGTCATCCGGAGAAGCCCCCACCATGGC
CTACCAGCTACAACGTCCCAAAACGCTACGAAGATCGGGAATTTCTTGTC
TCCTTTCCGTAGCGATTCGTCGCCGGCGATCAGCAAGTAGGGGGCTTTGA
GGATGGCTCGGATGAGTTCCTCCAAGTCAAGGCTCGCCACTCCTAGAGCA
AGCAGCTTCACCGTTTTTCCATGAAACTTCATCTTGCTGTTTTTTGTGTC
AAGCTCTACCTTGCTGCCATGTCGATACATACACATGATCAGACTCCCGA
TGTTGCGCAGGGGTAGGCCATATTCGAGGCACGTCTGACACATCCGGGCG
GCCACCATGCCATACGAGCGCCGCTTACTTTTCTGGCTGCTGTTCTTGCT
TTCACCAGCAGCACCAGCGGTGTCTCCCTCTTTGCTCTCCTCCCCTTCCT
TACTCTCCTCCTCGATCTTGGTCTCCTCCTCAATCGGGCGAAGATTATTC
CGAATCAGGTTGAAAGTATGCGTCGTATCGTCCACCACATTAGTGCGCCG
TTCTCTCTCAAGAGTAGTGTTCGTTTCCTTCACCCGAGAGGTAAGCGAGG
CGATACTTGCTTTCTGCCTGGCGCCCTGTGCCGCGACCACACCCGACAAC
ACAACAAGAACAGGTGACAGAGCAGTAGCAGAGGGGGAAAAGGGGGAAAT
AGCGACGGCAAGAAAAAATCTTCGTTAAAAAAAAACTCAGGACAAGATGA
CCGTTCGCAGCAGAGACGAAAAAGTATCGGCGAGCATATTTCACACATCA
ATTGTCAAAACCCGAACGACTCGACAGATCAAAGAACCCTCTGCAGTGCT
CAGCTCACCTGTCTCTTCAAGGTTGCGTTAGCTTTGACCAGCAGATTCAT
GGACTGCAGCTCCCTTTTCCTTTGGCTGGCCTGCATCCTCGCTTCAAGAA
CTTGCTGCTTAAGAGTGAGGGCTCGTTGAGACTCGGCAGCAGCAGTAGCA
GCAGCAGCAGCACCAGAGGCAGAGGCAGAATTGGTTCCAGGCAAATTACA
CCCAATCTTCTCCGCCATTGCCTTGATTTCTTCGTCCATGCTGCCGTTCG
CCAGAGACAAGCGCCTCACCTCCTCCGTCAAACGATGCACCTCCTCACGC
TCAGCAGCCAGCTTTTCCTTGGCAGCGTTGGCCGCGCGTTGCCACCACAT
GCGATCCGCTGCTGCTGCCGTTACGGCCTCCTCTCTGAGCTGCTGCTGCT
TTTTGGTTTCTCTTTTTTCATCCTCCAACATTTTTTTTGCATCCTCCAAC
TTGTTTTTCTCGTCCTCTAAATCTTTTTCAACCGCTTGACGCGCTGCCGT
CTCCTTTCGCCTTTCGCCACGGGCGACCGCCAACAGAGCGTGCGCGTTAC
GGTTGCTAAGCTCCAACGCCTCAGAGTCAGCGCGCCTGATGTTGGCGTCA
AGTATCGCTTGCCGACTCCTTTCGGTCATGGAGGAGCCGGTTTCAGCAAA
AATCTTTGCTCCTTGCTTCGCGAATCGCGCTTGTCTCTTTTTTTTTACCG
AAGCTCTCGTTTTCTTTGTGCGAGCGTTCGCCATAATAGACGATTCTGCA
AGAGGTGCTGCTCGACGTTGCCGTGGAGGTTTCGTTGACGGTTTGTTGCG
TTGGCTCGGCGAAAAGCAGAGCTAAGGTCTGTTCGCAATCGATTTGCATG
TGTCACTGAGCCAGAGCTGGCAGAGAGGCTTCACCGCTAAAAAAGGCCAA
AATAACACTGTTTTAGAGTCGTATGGGCCCCAGACACAAGCAATTGAAAA
ACTGTGCGGTTAGACATCAGATCTCCCATGTACACAGGTACGTATGCAGT
GGAGAGAGCCAGTTGCTCGCCTGAATCGAGTATTTCTCGATACCGTTTTG
TGCAGAAAGCAGTGTTTGTTGAAGTCAAACCGATTTTTGGCGTCGTCAGC
CGGACCGGCGGAATACGAGTATTTCCTGGTCCCCAGCCAAAAAAAAATCG
AATAATCATGCCATATTTTAGCCTCAAAAAGGGGGGTCAGGCGCAGCCCT
AAGTGTCATCTCGGACGAGACTTCGACAGGGGGACAGTTGGCTGCATTCG
CGCGCCCTTCCCCAACAACTGTCATCTCTGACGAGACTTCGACAGGGGGA
AAGTTGGCTGCGTTCACGCGCCCTTCCCCAACAGCTGTCATCTCTGACGA
GACTTCGACAGGGGGAAAGTTGGCTGCGTTCACGCGCCCTTCCCCAACAG
CTGTCATCTCTGACGAGACTTCGACGAGGGGAAAGTTGGCTGCGTTCACG
CGCCCTTCCCCAACAGCTGTCATCTCGGACGAGACTTCGACAGGGGGAAA
GTCGGCTGCGTTCACGCGCCCTTCCCCAACAGCTGTCTTCTCTGGTGAGA
CTTCGACTCTAGGAATTTCGGCTGCACGCTCGCGCCTTTCACGCACAGCT
GTCTTCTCTGATGAGACTTCAACGCTGAAAATTTCGGCTGCACTCCCGCG
CCGTTCCACCACAGCTGTTATCTCTGGCGAGACTTCGACGCTGTTGTCGG
GCACAACCTTTGGTCGCCAATCCGGAATACATGAAGGGGTCCCGTGGATC
ATGAAACCGTTATCTGATTCCACCGCCGGCGCAAACTCGCACATGCACGC
TGCGCGCGCCAGTGCGCCATCATCAGACACCATTGTTGAACATGCTTCTT
CACGCGTAGAGATCACTGATTTACCTTTCAGTCATGCAGTTGCATCGGGC
AGCACCGCTGCGGCTCGCCCGCCCTCAGCCAAGCCCATGTCATCGATCAC
TCGAACACAGAACGCATTACGGGAGGCACGTCGGATTCGCCGGTCAAATC
AGTACACTTTGCATACTGCTGCACGCACTGCCTTTGACAAAACGCCCCTT
CCGACGCCCAAACCAACACCACGTGCGCTCCCCTTGCGCGGCATGCAGAC
ACCACCGGCCCCGGACACCAGTATGTCAGACAGCTCCAAAACCAGTTCGT
CCGAAGCCGCGCCCGCCTTTATGGCTGAGGCAGCCGCGAGAAACACCGCG
CCCGCCGGAATGGCCGAGGCAGCACCAGCTCCTGCTCCGGACTCCAGGGG
CATCGCGGCCATACTGCACCCGTACAGTGAGCTGTCCCACACTCAGCGCA
CCGCGTACTCAGAGGCGATGTGGTCGGGCTTCCCTGACAGCATCAAGGCG
GGCCTGTGCAACCCGGCCCATGCAGCCCGCTTGCACCAAGCGGCCGAGTC
TGATGCGCAGCAGGCGCAGACAGCAGCCAAGGCCATCCTCGTAGAGGCAG
CCAACGGCAACCACCAGGCGGCGCAAGCCCAGCTTCGCTCCACCGAGCAT
ACACAAGCGACTTTGGCGGCACAAATCGCGGAAGGGAAACGCCATATGCA
GCAGCTTATAGCTACCGCCTCCGCCAACGCGGCACAGCTGGACAACGATC
GGGCGTGCACGGAGGCGGCAGCAGCTAAGGCCCACACTGCCGTTACCGGC
CAATCGTTGCCGCCGATTCTGGCGCCTGCCTCGTCTGCGCATGGCGGACG
CAGCCTGTTCCATCGCTCTCGCTCCCCCTCGCGCCGCACGCCGGCCGCAG
GCCCCGCTTCGGGCGCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1195:28603..36869+ >mRNA_P-littoralis_Contig1195.5.2 ID=mRNA_P-littoralis_Contig1195.5.2|Name=mRNA_P-littoralis_Contig1195.5.2|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1195:28603..36869+ (Pylaiella littoralis U1_48)
ATGTCAGACAGCTCCAAAACCAGTTCGTCCGAAGCCGCGCCCGCCTTTAT
GGCTGAGGCAGCCGCGAGAAACACCGCGCCCGCCGGAATGGCCGAGGCAG
CACCAGCTCCTGCTCCGGACTCCAGGGGCATCGCGGCCATACTGCACCCG
TACAGTGAGCTGTCCCACACTCAGCGCACCGCGTACTCAGAGGCGATGTG
GTCGGGCTTCCCTGACAGCATCAAGGCGGGCCTGTGCAACCCGGCCCATG
CAGCCCGCTTGCACCAAGCGGCCGAGTCTGATGCGCAGCAGGCGCAGACA
GCAGCCAAGGCCATCCTCGTAGAGGCAGCCAACGGCAACCACCAGGCGGC
GCAAGCCCAGCTTCGCTCCACCGAGCATACACAAGCGACTTTGGCGGCAC
AAATCGCGGAAGGGAAACGCCATATGCAGCAGCTTATAGCTACCGCCTCC
GCCAACGCGGCACAGCTGGACAACGATCGGGCGTGCACGGAGGCGGCAGC
AGCTAAGGCCCACACTGCCGTTACCGGCCAATCGTTGCCGCCGATTCTGG
CGCCTGCCTCGTCTGCGCATGGCGGACGCAGCCTGTTCCATCGCTCTCGC
TCCCCCTCGCGCCGCACGCCGGCCGCAGGCCCCGCTTCGGGCGCC back to top
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