mRNA_P-littoralis_Contig77.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.96.1
Unique NamemRNA_P-littoralis_Contig77.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: D7G712_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G712_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 6.730e-82
Identity = 168/284 (59.15%), Postives = 191/284 (67.25%), Query Frame = 2
Query:  221 SPSPKRAKRLQPASGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVL-GQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQ 1069
            SP  KRA+R+ P      E  A   R  QV LK LQIEGFKTFRDS+ ID+CPGW+       P P+N   + APSPLT+VFGGNGAGKS++FD VFFVL GQSSK IRSS GS+QLVNDQSVLQKGP+A ASVTITFQK   ++ M+T+ +                                    QGK CSRAAMMQ LNAFVGADMGDVDRY+LKQGSTMVC R+GKELLSFIERLAGT +LK + E+VQ  LDDLRE  L LE DVQ+S   RK LQPQ
Sbjct:    3 SPRAKRARRIPPGCSKTPEATAVGSRE-QVLLKRLQIEGFKTFRDSEVIDVCPGWQ-------PTPYNEEESLAPSPLTVVFGGNGAGKSALFDGVFFVLSGQSSKCIRSSRGSAQLVNDQSVLQKGPDAFASVTITFQKAGAWQGMDTDGE------------------------------------QGKACSRAAMMQALNAFVGADMGDVDRYLLKQGSTMVCHRDGKELLSFIERLAGTTQLKTQAEQVQTDLDDLREDTLSLEVDVQSSAHARKGLQPQ 242          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A835YP97_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP97_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.770e-25
Identity = 90/258 (34.88%), Postives = 133/258 (51.55%), Query Frame = 2
Query:  296 RPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQ 1069
            +P +V LK + + GFK+FRD   +D+CP     + P     + G  A      T V GGNG GKS++ DA+ FVLG ++  +RS   ++QL+ND+S        SASV+ITFQ++    D            G T         L V RSV    GTSTY+L G   +R  M++ ++ F G  M + DR+V++QG T++ +R   ELL++ E LAGT  L+ +       L+  +   L  E   Q     R +L+PQ
Sbjct:   78 QPSRVVLKKVIVRGFKSFRDEVVVDLCP-----ESPSAATAFRGTRAC----FTCVLGGNGVGKSALVDAILFVLGHAANQLRSQK-AAQLINDES-------QSASVSITFQRLGSEGD------------GGT---------LVVSRSVVSS-GTSTYALNGSAVARGHMLEEVSRFCGCSMANPDRFVMRQGVTLLAQRGTAELLAYFEELAGTGTLRDDIAAANKKLEQAQTSLLAAEERSQDLAERRARLRPQ 296          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: UPI00058F7530 (chromosome segregation protein SMC n=1 Tax=Sporosarcina koreensis TaxID=334735 RepID=UPI00058F7530)

HSP 1 Score: 60.5 bits (145), Expect = 2.950e-6
Identity = 64/229 (27.95%), Postives = 102/229 (44.54%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEEVQIAL 988
            +FLK L+I GFK+F D  SID  PG                       +T V G NG+GKS+V DA+ +VLG QS+KS+R +         Q V+  G ++  +  + F +V             LT+D +T        E+SV R V    G S++ L G+VC    +  + + FV + +G     ++ QG    +     ++  S  +  AG  K +   ++ +  L
Sbjct:    1 MFLKRLEIIGFKSFADKVSIDFVPG-----------------------VTAVVGPNGSGKSNVIDAIRWVLGEQSAKSLRGA-------KMQDVIFAGSDSRKA--LNFAEVT------------LTLDNSTGLFPLDYTEISVSRRVFRS-GESSFQLNGQVCR---LKDINDVFVDSGLGKEAFSIISQGRVDEILNSRPEDRRSIFDEAAGVLKYRMRKKKAEFKL 181          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: X0VJL6_9ZZZZ (SMC_N domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0VJL6_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 3.390e-6
Identity = 62/224 (27.68%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEE 973
            +FLK L++ GFK+F    +I+  PG                       +TIV G NG GKS++FDA+ +VLG QS+KS+R+S  +  + N  S  +  P   A V++TF     Y  ++                     E+ V R +    G S Y L    C    +  ++  F+   MG     +++QG   ++   +  E     E  AG AK K   EE
Sbjct:    1 MFLKNLEMVGFKSFATKTTIEFFPG-----------------------ITIVVGPNGCGKSNIFDAIRWVLGEQSAKSLRASRMADVIFNGSSSYK--PLGFAQVSLTFSNEDRYLPLD-------------------FSEVVVTRRLFR-TGESEYLLNKVPCR---LRDIVELFMDTGMGTDAYSIMEQGKVDLIINSKPAERRYIFEEAAGIAKYKLRKEE 176          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A5C7WA38_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Moranbacteria bacterium TaxID=2045217 RepID=A0A5C7WA38_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 6.150e-6
Identity = 72/241 (29.88%), Postives = 111/241 (46.06%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQG-STMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEA 1024
            +FLK L+I GFK+F +  S+D  P     D+       NG    A   +T + G NG+GKS+V DA+ + +G QSSK++R  G  S+ V      +K    +ASVT+ F            SD  + ++ A         E+S+ R V +  G S Y + G   SR  ++ V++    A +G     V+ QG S  V      E  +  E  AG  + + E E     L+  RE  + ++A
Sbjct:    9 MFLKKLEINGFKSFANRTSLDFLP---DCDLA------NG----ATCGITAIVGPNGSGKSNVADAIRWAIGEQSSKNLR--GKKSEDVIFAGTDKKSRLGTASVTLHFDN----------SDKRIPIEFA---------EVSIARKV-YRSGESEYLING---SRVRLIDVVDLLAKAGIGKDSYCVITQGMSDAVLNATATERRAIFEDAAGVKQYQIEKERALRKLESTRENLVRVDA 211          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A2E0WFR3_9CHLR (Chromosome segregation protein SMC (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E0WFR3_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 7.600e-6
Identity = 68/230 (29.57%), Postives = 107/230 (46.52%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEEVQIALD 991
            +FLK L I+GFK+F DS ++D+ PG                       +T V G NG+GKS+V DAV +VLG Q+  ++RS     Q ++D  V+  G    +++                ++  LT+D + +S S    E+++ R++    G S YSL G  C R   +Q L + VG  +G     ++ QG    V     ++  S IE  AG  K +   E+ +  LD
Sbjct:    1 MFLKRLNIKGFKSFADSATLDLEPG-----------------------VTAVVGPNGSGKSNVVDAVAWVLGAQAPSAVRS-----QRMDD--VIFAGTADRSALG--------------RAEVSLTIDNSDSSLSLDFPEITITRTLFRS-GESEYSLNGSPC-RLLDIQELLSDVG--VGRQQHVIISQGQIDAVLNAREEDRRSIIEDAAGILKYRKRKEKAERRLD 182          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A2T1LY43_9CHRO (Chromosome partition protein Smc n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1LY43_9CHRO)

HSP 1 Score: 58.5 bits (140), Expect = 1.220e-5
Identity = 61/236 (25.85%), Postives = 103/236 (43.64%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRG---TSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLRE 1003
            V++K +++  FK+F  +  I + PG+                       T+V G NG+GKS++ DA+ F LG  SSK +R+      + ++    +    AS SVT    +  E                     +G  +E +V R ++ G+G   TSTY + G++C+ + + + LN F     G     VL+   T +     KE    I+ LAG A+   + E+    L+ +RE
Sbjct:    2 VYIKRVELSHFKSFGGTTPIPLLPGF-----------------------TVVSGPNGSGKSNILDALLFCLGLASSKGMRAERLPDLVNHNHGTHRNTTEASVSVTFDVSEAEENNG------------------NGYHREWTVTRRLRVGKGGNYTSTYYINGELCTVSELHEQLNRFRIYPEGY--NVVLQGDVTRIITMNSKERREIIDELAGVAEFDRKIEKTLKTLESVRE 194          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A5A8DC36_CAFRO (SMC hinge domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DC36_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 2.300e-5
Identity = 77/294 (26.19%), Postives = 128/294 (43.54%), Query Frame = 2
Query:  200 GCRIMAGSPSPKRAKRLQPASGGILEV-------EAAVRRPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLK-----AETEEVQIALDDL--REQALGLEADVQTS 1039
            G +  +  PSP+ A   +    G L         E ++R      L  L++E FK++  S +I     +RS                     + V G NGAGKS+V DA+ FVLG S+K +R S  +  + N+ +V   G   S+       +           +DE  V G  +      +EL   RSV    G   + +QG+V + A   + L + V  D    +  V +   T + RR  +EL+ ++E +AG+A+L+     AE E+ +   + +  + QA G   +V+T+
Sbjct:  256 GLQASSPPPSPRGASDGRATDAGQLASADEPSGGETSLRAAMSGRLDRLELENFKSYHGSHTIGP---FRSF--------------------SCVCGPNGAGKSNVMDAICFVLGLSAKHMRGSALTDLIYNNSAVAASGDADSSGREGGEDRAVVRMVYVVGEEDEPQVAGGVSPG----EELVFSRSVTRSGG-GEFRVQGRVVTAAQYKRTLRS-VNIDTDSREFLVFQGDVTSLARRSPRELMDYLEVVAGSARLRPAFEAAEAEKAKAQDESIFAQRQAKGARLEVRTA 520          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A3C2CPB6_9ACTN (Chromosome segregation protein SMC (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2CPB6_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 2.480e-5
Identity = 67/230 (29.13%), Postives = 107/230 (46.52%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEEVQIALD 991
            +FLK L I+GFK+F DS ++D+ PG                       +T V G NG+GKS+V DAV +VLG Q+  ++RS     Q ++D  V+  G    +++                ++  LT+D + +S +    E+++ R++    G S YSL G  C R   +Q L + VG  +G     ++ QG    V     ++  S IE  AG  K +   E+ +  LD
Sbjct:    1 MFLKRLNIKGFKSFADSATLDLEPG-----------------------VTAVVGPNGSGKSNVVDAVAWVLGAQAPSAVRS-----QRMDD--VIFAGTTDRSALG--------------RAEVSLTIDNSDSSLALDFPEITITRTLFRS-GESEYSLNGSPC-RLLDIQELLSDVG--VGRQQHVIISQGQIDAVLNAREEDRRSIIEDAAGILKFRKRKEKSERRLD 182          
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: UPI000360C234 (chromosome segregation protein SMC n=1 Tax=Weizmannia acidiproducens TaxID=1121084 RepID=UPI000360C234)

HSP 1 Score: 57.4 bits (137), Expect = 2.850e-5
Identity = 64/234 (27.35%), Postives = 105/234 (44.87%), Query Frame = 2
Query:  308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTM-VCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLRE 1003
            +FLK L + GFK+F +  S++  PG                       +T V G NG+GKS+V DAV +VLG QS+KS+R  GG  + V       + P   A VT+T +            D +L +D          QE+SV R V +  G S + +  + C R  ++++   F+ + +G     ++ QG    +   + +E  +  E  AG  K K   ++ +  L + +E
Sbjct:    1 MFLKRLDLIGFKSFAERVSVEFVPG-----------------------VTAVVGPNGSGKSNVIDAVRWVLGEQSAKSLR--GGKMEDVIFGGSDTRKPLNFAEVTLTLEN----------EDGKLPID---------YQEVSVTRRV-YRSGDSEFYINKQACRRKDIVEL---FMDSGLGKEAFSIISQGKVEEILNSKAEERRTIFEEAAGVLKYKTRKKKAEAKLTETQE 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G712_ECTSI6.730e-8259.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YP97_9STRA1.770e-2534.88RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371... [more]
UPI00058F75302.950e-627.95chromosome segregation protein SMC n=1 Tax=Sporosa... [more]
X0VJL6_9ZZZZ3.390e-627.68SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A5C7WA38_9BACT6.150e-629.88SMC_N domain-containing protein n=1 Tax=Candidatus... [more]
A0A2E0WFR3_9CHLR7.600e-629.57Chromosome segregation protein SMC (Fragment) n=1 ... [more]
A0A2T1LY43_9CHRO1.220e-525.85Chromosome partition protein Smc n=1 Tax=Aphanothe... [more]
A0A5A8DC36_CAFRO2.300e-526.19SMC hinge domain-containing protein n=3 Tax=Cafete... [more]
A0A3C2CPB6_9ACTN2.480e-529.13Chromosome segregation protein SMC (Fragment) n=1 ... [more]
UPI000360C2342.850e-527.35chromosome segregation protein SMC n=1 Tax=Weizman... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:312574..315664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G712
PFAMsSMC_N,SMC_hinge
Model size1073
Max annot lvl2759|Eukaryota
KEGG koko:K06636,ko:K06675
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000793,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0048285,GO:0051276,GO:0071840,GO:0098687,GO:0098813,GO:0140014,GO:1903047
Exons6
Evalue3.32e-83
EggNOG OGsCOG1196@1|root,KOG0996@2759|Eukaryota
Ec32 ortholog descriptionSMCs flexible hinge
Ec32 orthologEc-01_011480.1
Descriptionchromosome condensation
Cds size861
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.96.1prot_P-littoralis_Contig77.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 312785..315664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791590.7325292-UTR-P-littoralis_Contig77:312573..3127841680791590.7325292-UTR-P-littoralis_Contig77:312573..312784Pylaiella littoralis U1_48UTRP-littoralis_Contig77 312574..312784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791590.7486122-CDS-P-littoralis_Contig77:312784..3129301680791590.7486122-CDS-P-littoralis_Contig77:312784..312930Pylaiella littoralis U1_48CDSP-littoralis_Contig77 312785..312930 +
1680791590.7628489-CDS-P-littoralis_Contig77:313110..3132791680791590.7628489-CDS-P-littoralis_Contig77:313110..313279Pylaiella littoralis U1_48CDSP-littoralis_Contig77 313111..313279 +
1680791590.7749686-CDS-P-littoralis_Contig77:313976..3141291680791590.7749686-CDS-P-littoralis_Contig77:313976..314129Pylaiella littoralis U1_48CDSP-littoralis_Contig77 313977..314129 +
1680791590.7890735-CDS-P-littoralis_Contig77:314514..3146191680791590.7890735-CDS-P-littoralis_Contig77:314514..314619Pylaiella littoralis U1_48CDSP-littoralis_Contig77 314515..314619 +
1680791590.7997565-CDS-P-littoralis_Contig77:315093..3151981680791590.7997565-CDS-P-littoralis_Contig77:315093..315198Pylaiella littoralis U1_48CDSP-littoralis_Contig77 315094..315198 +
1680791590.8098142-CDS-P-littoralis_Contig77:315481..3156641680791590.8098142-CDS-P-littoralis_Contig77:315481..315664Pylaiella littoralis U1_48CDSP-littoralis_Contig77 315482..315664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.96.1

>prot_P-littoralis_Contig77.96.1 ID=prot_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MAGSPSPKRAKRLQPASGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQ
SIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVF
FVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDME
TESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAM
MQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKA
ETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQA
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mRNA from alignment at P-littoralis_Contig77:312574..315664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.96.1 ID=mRNA_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3091bp|location=Sequence derived from alignment at P-littoralis_Contig77:312574..315664+ (Pylaiella littoralis U1_48)
GCCAGGGCCTATTGGCCGCAACTTCGTGCTTCACTGACTGCGTGGCAAGT TTTAGTTCCATTGTTTAGGCGATGCTAGGCGTGTGAGGTACCGTCGTGAA GCTTTCAAGCTGTCAACTCTTCCCCGCCGTGCTCTCTTCCGTTCAGAAAA AACTCGACGATAGCTGCGGGGCAACAAGCACACACAGTTGACATCCGGGG GTTGCCGCATCATGGCAGGGAGTCCTTCGCCCAAGCGAGCAAAGCGGCTG CAGCCAGCCTCTGGAGGTATCCTGGAGGTGGAAGCAGCAGTGAGACGTCC GGGGCAGGTTTTCCTCAAGCTGTTGCAGATCGAAGGCTTCAAAACGTTTC GTGACAGGTACAGACTTGCATTTTTCACATTCCTTTCAAATTTGAAAGTT TGCAAGACGTGAGCCAAGTCTGTAGACTATGCCTTCTGCTGATCTTGTCC CCGCCGATGCTCCTTCTCATCCCTAACCCTTTCCCCACTCTTCCGTGCTC TTCTGTGAATACATCCACATGCTGTACCATATACTAGCCAGAGCATTGAT ATGTGTCCCGGTTGGAGGTCCATAGACGTTCCAGGGCACCCGATGCCGTG GAACGGAGTGGTGGCACCGGCTCCATCTCCTTTGACTATTGTCTTTGGAG GTAACGGCGCTGGAAAGTCGTCCGTTTTTGACGCCGTGTTTTTCGTCCTC GGTCAGGTAGGGCGAGAACTGACTGCATGCTTTCATGTGGCTGTCTCTTG TGTTGCTGCTGCGTGTAGTGTCGTGGCACGGAACTCAATGGGACTGGCGA AGAAAAGTATGCATTTTGTGTGGGCCTCGAAAAAGTTGGAGGTGCCGGCC CTCAAGGTGACCTCGCTCGGTCCCACCATGGGTAAAAACTTCTCAATCGT CGACTGGCAATACATCGGCTGACGCCTGTGGGATCAAAAACATTTCCCCT ACTGTGCAGTGTTCGTGTTGCACTGAAATATGAGGCAGGATGGGTTTGAT CCCTGGTGCGGATCGCTTTTCGATATTTTGGGAATTAACTAGATGTTTGT GTGGCTCCCCTAATGACAATTTCTGCCGCTTTCTCCCCTAGTATGATAGG TCTGCCATTGCAGTATAATAGGACGTGGCTGTCGACAGTTTTCAAGCCTA TCGTAGAGTTTACGTATTTACACCCTCATGCCTGTCCAAAAACAGGGGTC TAGTCCATCGTGAAGAGTGATACCCTTCAGACAGACATCTTCCTTTTACG GTTCTGCGGCTTACCCATATTTCTACGTATGGGCACAGTAGTCTGTGGGC ACACGCATGAGATTGAGCTACCTCACAAACCCGACTACAAATACCTGATG TGTGTGGTTGCCACTACTGTGGTTCAAAATGCATCATGAACTTGTCGTTG CAGAGTTCCAAGTCAATCCGGTCAAGCGGAGGCTCCTCCCAACTAGTGAA CGACCAAAGCGTCCTCCAGAAAGGACCCAACGCTTCCGCGAGTGTCACCA TCACCTTCCAGAAAGTCAGGGAGTACCGGGACATGGAAACTGAGAGCGAC GATGAGGTAAGAGCCGCATCAACGTGTGTCTTGCGATGAGGTTGTTGGTG TAGAGTGCATCGTGTGTAGTGAATTTTGGCACTGCCTTTATGAAAGATTC GCCTGTGCTTGTCGTGTTACTGCTGTATACTTTGGCTGCTGCGCATACAT CGGAAACTGCAGCCTAGCATGTTCTTGCTGTTTCGCGTTCGGACATGCCC ATTGTTTCTGCCAAACTACGAGAAATTCACACATGTAGTGTAGGTCGCTG ACCGCGTGCTGATACAGAACTTGTGCACACCACTCCTGGTGCTGTCCACT CATGCGCAACACAGGGAACAAACGTATCAACTTTTCGTCGCATCGGAATT GAAATCATGCTCAATGTGTTGTTTACTCCCCCCCCCCCCAGCTAACTGTC GATGGTGCAACGGCTTCGCACTCGGGTACCTTGCAAGAGCTTTCGGTAGG GCGATCCGTCAAGCACGGTAGAGGAACAAGCACGTATAGCCTGCAGGTAA AATAAGTGTTATACGTTCTCGAAGTAACTGGTAGCGTCTGATTTTTGGCG GTACCGTATTGCCGGCGTGCATGTGACTCTGCACGCGTCAAAGTAGGTAG CGTACACGACACAGGGACCGATGAAGGCCCCTGCTGCAAATGTATGGACC GACCGAAGATCGCTTGCTTGTTACCTTCTAGTTGTACTTGTTCATTCATC CTGCATTTGTTGTTGTTTTCCTGCTGCCATGTATGTGCGATACTTGCTTC ATTTTGGATCCATCCATTCGCGTTCACCAACCATTTGCACCCCGCCCCAA ATACATGTTCAATCAGCCAGCCCTCAAAGATACCTATGTCTGGAAAATGC CACATTGATACTATGTACGATAAAACGAGGCTCATTCGGGGGCGAGCGTA TCGCTCTGGAGTACACTCATCTTTCCATACAAAAAACGCTGAGCTCGTTG CGCCCGCTTCACGCGCCCAGGGAAAAGTGTGCTCGAGGGCGGCAATGATG CAGGTGCTCAACGCGTTCGTCGGAGCTGACATGGGAGACGTCGACCGCTA CGTCCTGAAACAGGGCTCGACGATGGTAGGTATTTGGCAAACACTTATGT GGAGTTGCCTCGTATCTCTACTAAAATTCATCCGGTCTACGAAGTATATG ATATGTCCATCCATGACATACATGTTGACACGAACGAAAGCGCGGAGGGG CAGTGACGCCGGTCATAACCCCATCAATCATTGCACAGGTGACGGGGCGT AGCCGGTGCTACGGGTTCAAATAAGAAAAAAATTGGTTGCCACCATGGAA CGGTTCCTTGGTATCGATTGCAGTCATGATAACATTATCCCATGCAATTT TCGGCCAGGTGTGTCGCCGTGAAGGGAAGGAGCTCTTGTCGTTCATAGAG CGCCTGGCGGGGACCGCGAAGCTCAAGGCGGAAACCGAAGAAGTGCAAAT AGCCCTCGACGACCTGCGCGAACAGGCACTGGGCCTCGAAGCCGACGTTC AAACATCTCTCCGCACCAGGAAGCAACTTCAACCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:312574..315664+

>mRNA_P-littoralis_Contig77.96.1 ID=mRNA_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig77:312574..315664+ (Pylaiella littoralis U1_48)
ATGGCAGGGAGTCCTTCGCCCAAGCGAGCAAAGCGGCTGCAGCCAGCCTC
TGGAGGTATCCTGGAGGTGGAAGCAGCAGTGAGACGTCCGGGGCAGGTTT
TCCTCAAGCTGTTGCAGATCGAAGGCTTCAAAACGTTTCGTGACAGCCAG
AGCATTGATATGTGTCCCGGTTGGAGGTCCATAGACGTTCCAGGGCACCC
GATGCCGTGGAACGGAGTGGTGGCACCGGCTCCATCTCCTTTGACTATTG
TCTTTGGAGGTAACGGCGCTGGAAAGTCGTCCGTTTTTGACGCCGTGTTT
TTCGTCCTCGGTCAGAGTTCCAAGTCAATCCGGTCAAGCGGAGGCTCCTC
CCAACTAGTGAACGACCAAAGCGTCCTCCAGAAAGGACCCAACGCTTCCG
CGAGTGTCACCATCACCTTCCAGAAAGTCAGGGAGTACCGGGACATGGAA
ACTGAGAGCGACGATGAGCTAACTGTCGATGGTGCAACGGCTTCGCACTC
GGGTACCTTGCAAGAGCTTTCGGTAGGGCGATCCGTCAAGCACGGTAGAG
GAACAAGCACGTATAGCCTGCAGGGAAAAGTGTGCTCGAGGGCGGCAATG
ATGCAGGTGCTCAACGCGTTCGTCGGAGCTGACATGGGAGACGTCGACCG
CTACGTCCTGAAACAGGGCTCGACGATGGTGTGTCGCCGTGAAGGGAAGG
AGCTCTTGTCGTTCATAGAGCGCCTGGCGGGGACCGCGAAGCTCAAGGCG
GAAACCGAAGAAGTGCAAATAGCCCTCGACGACCTGCGCGAACAGGCACT
GGGCCTCGAAGCCGACGTTCAAACATCTCTCCGCACCAGGAAGCAACTTC
AACCACAGGCG
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