mRNA_P-littoralis_Contig77.96.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: D7G712_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G712_ECTSI) HSP 1 Score: 281 bits (719), Expect = 6.730e-82 Identity = 168/284 (59.15%), Postives = 191/284 (67.25%), Query Frame = 2
Query: 221 SPSPKRAKRLQPASGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVL-GQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQ 1069
SP KRA+R+ P E A R QV LK LQIEGFKTFRDS+ ID+CPGW+ P P+N + APSPLT+VFGGNGAGKS++FD VFFVL GQSSK IRSS GS+QLVNDQSVLQKGP+A ASVTITFQK ++ M+T+ + QGK CSRAAMMQ LNAFVGADMGDVDRY+LKQGSTMVC R+GKELLSFIERLAGT +LK + E+VQ LDDLRE L LE DVQ+S RK LQPQ
Sbjct: 3 SPRAKRARRIPPGCSKTPEATAVGSRE-QVLLKRLQIEGFKTFRDSEVIDVCPGWQ-------PTPYNEEESLAPSPLTVVFGGNGAGKSALFDGVFFVLSGQSSKCIRSSRGSAQLVNDQSVLQKGPDAFASVTITFQKAGAWQGMDTDGE------------------------------------QGKACSRAAMMQALNAFVGADMGDVDRYLLKQGSTMVCHRDGKELLSFIERLAGTTQLKTQAEQVQTDLDDLREDTLSLEVDVQSSAHARKGLQPQ 242
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A835YP97_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP97_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.770e-25 Identity = 90/258 (34.88%), Postives = 133/258 (51.55%), Query Frame = 2
Query: 296 RPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEADVQTSLRTRKQLQPQ 1069
+P +V LK + + GFK+FRD +D+CP + P + G A T V GGNG GKS++ DA+ FVLG ++ +RS ++QL+ND+S SASV+ITFQ++ D G T L V RSV GTSTY+L G +R M++ ++ F G M + DR+V++QG T++ +R ELL++ E LAGT L+ + L+ + L E Q R +L+PQ
Sbjct: 78 QPSRVVLKKVIVRGFKSFRDEVVVDLCP-----ESPSAATAFRGTRAC----FTCVLGGNGVGKSALVDAILFVLGHAANQLRSQK-AAQLINDES-------QSASVSITFQRLGSEGD------------GGT---------LVVSRSVVSS-GTSTYALNGSAVARGHMLEEVSRFCGCSMANPDRFVMRQGVTLLAQRGTAELLAYFEELAGTGTLRDDIAAANKKLEQAQTSLLAAEERSQDLAERRARLRPQ 296
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: UPI00058F7530 (chromosome segregation protein SMC n=1 Tax=Sporosarcina koreensis TaxID=334735 RepID=UPI00058F7530) HSP 1 Score: 60.5 bits (145), Expect = 2.950e-6 Identity = 64/229 (27.95%), Postives = 102/229 (44.54%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEEVQIAL 988
+FLK L+I GFK+F D SID PG +T V G NG+GKS+V DA+ +VLG QS+KS+R + Q V+ G ++ + + F +V LT+D +T E+SV R V G S++ L G+VC + + + FV + +G ++ QG + ++ S + AG K + ++ + L
Sbjct: 1 MFLKRLEIIGFKSFADKVSIDFVPG-----------------------VTAVVGPNGSGKSNVIDAIRWVLGEQSAKSLRGA-------KMQDVIFAGSDSRKA--LNFAEVT------------LTLDNSTGLFPLDYTEISVSRRVFRS-GESSFQLNGQVCR---LKDINDVFVDSGLGKEAFSIISQGRVDEILNSRPEDRRSIFDEAAGVLKYRMRKKKAEFKL 181
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: X0VJL6_9ZZZZ (SMC_N domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0VJL6_9ZZZZ) HSP 1 Score: 57.4 bits (137), Expect = 3.390e-6 Identity = 62/224 (27.68%), Postives = 95/224 (42.41%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEE 973
+FLK L++ GFK+F +I+ PG +TIV G NG GKS++FDA+ +VLG QS+KS+R+S + + N S + P A V++TF Y ++ E+ V R + G S Y L C + ++ F+ MG +++QG ++ + E E AG AK K EE
Sbjct: 1 MFLKNLEMVGFKSFATKTTIEFFPG-----------------------ITIVVGPNGCGKSNIFDAIRWVLGEQSAKSLRASRMADVIFNGSSSYK--PLGFAQVSLTFSNEDRYLPLD-------------------FSEVVVTRRLFR-TGESEYLLNKVPCR---LRDIVELFMDTGMGTDAYSIMEQGKVDLIINSKPAERRYIFEEAAGIAKYKLRKEE 176
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A5C7WA38_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Moranbacteria bacterium TaxID=2045217 RepID=A0A5C7WA38_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 6.150e-6 Identity = 72/241 (29.88%), Postives = 111/241 (46.06%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQG-STMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLREQALGLEA 1024
+FLK L+I GFK+F + S+D P D+ NG A +T + G NG+GKS+V DA+ + +G QSSK++R G S+ V +K +ASVT+ F SD + ++ A E+S+ R V + G S Y + G SR ++ V++ A +G V+ QG S V E + E AG + + E E L+ RE + ++A
Sbjct: 9 MFLKKLEINGFKSFANRTSLDFLP---DCDLA------NG----ATCGITAIVGPNGSGKSNVADAIRWAIGEQSSKNLR--GKKSEDVIFAGTDKKSRLGTASVTLHFDN----------SDKRIPIEFA---------EVSIARKV-YRSGESEYLING---SRVRLIDVVDLLAKAGIGKDSYCVITQGMSDAVLNATATERRAIFEDAAGVKQYQIEKERALRKLESTRENLVRVDA 211
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A2E0WFR3_9CHLR (Chromosome segregation protein SMC (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E0WFR3_9CHLR) HSP 1 Score: 57.0 bits (136), Expect = 7.600e-6 Identity = 68/230 (29.57%), Postives = 107/230 (46.52%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEEVQIALD 991
+FLK L I+GFK+F DS ++D+ PG +T V G NG+GKS+V DAV +VLG Q+ ++RS Q ++D V+ G +++ ++ LT+D + +S S E+++ R++ G S YSL G C R +Q L + VG +G ++ QG V ++ S IE AG K + E+ + LD
Sbjct: 1 MFLKRLNIKGFKSFADSATLDLEPG-----------------------VTAVVGPNGSGKSNVVDAVAWVLGAQAPSAVRS-----QRMDD--VIFAGTADRSALG--------------RAEVSLTIDNSDSSLSLDFPEITITRTLFRS-GESEYSLNGSPC-RLLDIQELLSDVG--VGRQQHVIISQGQIDAVLNAREEDRRSIIEDAAGILKYRKRKEKAERRLD 182
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A2T1LY43_9CHRO (Chromosome partition protein Smc n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1LY43_9CHRO) HSP 1 Score: 58.5 bits (140), Expect = 1.220e-5 Identity = 61/236 (25.85%), Postives = 103/236 (43.64%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRG---TSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLRE 1003
V++K +++ FK+F + I + PG+ T+V G NG+GKS++ DA+ F LG SSK +R+ + ++ + AS SVT + E +G +E +V R ++ G+G TSTY + G++C+ + + + LN F G VL+ T + KE I+ LAG A+ + E+ L+ +RE
Sbjct: 2 VYIKRVELSHFKSFGGTTPIPLLPGF-----------------------TVVSGPNGSGKSNILDALLFCLGLASSKGMRAERLPDLVNHNHGTHRNTTEASVSVTFDVSEAEENNG------------------NGYHREWTVTRRLRVGKGGNYTSTYYINGELCTVSELHEQLNRFRIYPEGY--NVVLQGDVTRIITMNSKERREIIDELAGVAEFDRKIEKTLKTLESVRE 194
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A5A8DC36_CAFRO (SMC hinge domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DC36_CAFRO) HSP 1 Score: 57.8 bits (138), Expect = 2.300e-5 Identity = 77/294 (26.19%), Postives = 128/294 (43.54%), Query Frame = 2
Query: 200 GCRIMAGSPSPKRAKRLQPASGGILEV-------EAAVRRPGQVFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLGQSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTMVCRREGKELLSFIERLAGTAKLK-----AETEEVQIALDDL--REQALGLEADVQTS 1039
G + + PSP+ A + G L E ++R L L++E FK++ S +I +RS + V G NGAGKS+V DA+ FVLG S+K +R S + + N+ +V G S+ + +DE V G + +EL RSV G + +QG+V + A + L + V D + V + T + RR +EL+ ++E +AG+A+L+ AE E+ + + + + QA G +V+T+
Sbjct: 256 GLQASSPPPSPRGASDGRATDAGQLASADEPSGGETSLRAAMSGRLDRLELENFKSYHGSHTIGP---FRSF--------------------SCVCGPNGAGKSNVMDAICFVLGLSAKHMRGSALTDLIYNNSAVAASGDADSSGREGGEDRAVVRMVYVVGEEDEPQVAGGVSPG----EELVFSRSVTRSGG-GEFRVQGRVVTAAQYKRTLRS-VNIDTDSREFLVFQGDVTSLARRSPRELMDYLEVVAGSARLRPAFEAAEAEKAKAQDESIFAQRQAKGARLEVRTA 520
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: A0A3C2CPB6_9ACTN (Chromosome segregation protein SMC (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2CPB6_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 2.480e-5 Identity = 67/230 (29.13%), Postives = 107/230 (46.52%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGST-MVCRREGKELLSFIERLAGTAKLKAETEEVQIALD 991
+FLK L I+GFK+F DS ++D+ PG +T V G NG+GKS+V DAV +VLG Q+ ++RS Q ++D V+ G +++ ++ LT+D + +S + E+++ R++ G S YSL G C R +Q L + VG +G ++ QG V ++ S IE AG K + E+ + LD
Sbjct: 1 MFLKRLNIKGFKSFADSATLDLEPG-----------------------VTAVVGPNGSGKSNVVDAVAWVLGAQAPSAVRS-----QRMDD--VIFAGTTDRSALG--------------RAEVSLTIDNSDSSLALDFPEITITRTLFRS-GESEYSLNGSPC-RLLDIQELLSDVG--VGRQQHVIISQGQIDAVLNAREEDRRSIIEDAAGILKFRKRKEKSERRLD 182
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Match: UPI000360C234 (chromosome segregation protein SMC n=1 Tax=Weizmannia acidiproducens TaxID=1121084 RepID=UPI000360C234) HSP 1 Score: 57.4 bits (137), Expect = 2.850e-5 Identity = 64/234 (27.35%), Postives = 105/234 (44.87%), Query Frame = 2
Query: 308 VFLKLLQIEGFKTFRDSQSIDMCPGWRSIDVPGHPMPWNGVVAPAPSPLTIVFGGNGAGKSSVFDAVFFVLG-QSSKSIRSSGGSSQLVNDQSVLQKGPNASASVTITFQKVREYRDMETESDDELTVDGATASHSGTLQELSVGRSVKHGRGTSTYSLQGKVCSRAAMMQVLNAFVGADMGDVDRYVLKQGSTM-VCRREGKELLSFIERLAGTAKLKAETEEVQIALDDLRE 1003
+FLK L + GFK+F + S++ PG +T V G NG+GKS+V DAV +VLG QS+KS+R GG + V + P A VT+T + D +L +D QE+SV R V + G S + + + C R ++++ F+ + +G ++ QG + + +E + E AG K K ++ + L + +E
Sbjct: 1 MFLKRLDLIGFKSFAERVSVEFVPG-----------------------VTAVVGPNGSGKSNVIDAVRWVLGEQSAKSLR--GGKMEDVIFGGSDTRKPLNFAEVTLTLEN----------EDGKLPID---------YQEVSVTRRV-YRSGDSEFYINKQACRRKDIVEL---FMDSGLGKEAFSIISQGKVEEILNSKAEERRTIFEEAAGVLKYKTRKKKAEAKLTETQE 186 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig77.96.1 >prot_P-littoralis_Contig77.96.1 ID=prot_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp MAGSPSPKRAKRLQPASGGILEVEAAVRRPGQVFLKLLQIEGFKTFRDSQback to top mRNA from alignment at P-littoralis_Contig77:312574..315664+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig77.96.1 ID=mRNA_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3091bp|location=Sequence derived from alignment at P-littoralis_Contig77:312574..315664+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig77:312574..315664+ >mRNA_P-littoralis_Contig77.96.1 ID=mRNA_P-littoralis_Contig77.96.1|Name=mRNA_P-littoralis_Contig77.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig77:312574..315664+ (Pylaiella littoralis U1_48)back to top |