prot_P-littoralis_Contig77.87.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig77.87.1
Unique Nameprot_P-littoralis_Contig77.87.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length53
Homology
BLAST of mRNA_P-littoralis_Contig77.87.1 vs. uniprot
Match: A0A0S3QSG0_THET7 (Glycine cleavage system H protein n=1 Tax=Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6) TaxID=1298851 RepID=A0A0S3QSG0_THET7)

HSP 1 Score: 48.9 bits (115), Expect = 9.470e-6
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 0
Query:    3 GELIQANKALLENPGLMSEDPLGLGWLAIVRLK-PRDLRHL 42
            GE+++ N+ L++NP L+SEDP G GW+AI+R+  P +L+ L
Sbjct:   74 GEIVEVNEMLIDNPSLLSEDPYGDGWIAIIRMHDPDELQRL 114          
BLAST of mRNA_P-littoralis_Contig77.87.1 vs. uniprot
Match: A0A1M6JUD5_9RHOB (Glycine cleavage system H protein n=4 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A1M6JUD5_9RHOB)

HSP 1 Score: 46.6 bits (109), Expect = 5.570e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    3 GELIQANKALLENPGLMSEDPLGLGWLAIVRLKPRDLRHLQQAL 46
            GE+I+ N AL+ENP L++EDPLG GW    ++K  D+  L Q +
Sbjct:   71 GEIIEVNAALVENPALVNEDPLGAGWF--FKMKVADIGDLDQLM 112          
BLAST of mRNA_P-littoralis_Contig77.87.1 vs. uniprot
Match: A0A800AQD5_9BACT (Glycine cleavage system H protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A800AQD5_9BACT)

HSP 1 Score: 46.2 bits (108), Expect = 8.260e-5
Identity = 17/38 (44.74%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 MFGELIQANKALLENPGLMSEDPLGLGWLAIVRLKPRD 38
            + G++I+ NK L+ NPGL+++DP G GWLA + +K ++
Sbjct:   69 LSGKIIKVNKELINNPGLINQDPYGKGWLAKIEIKDKN 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.87.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0S3QSG0_THET79.470e-648.78Glycine cleavage system H protein n=1 Tax=Thermosu... [more]
A0A1M6JUD5_9RHOB5.570e-547.73Glycine cleavage system H protein n=4 Tax=Roseobac... [more]
A0A800AQD5_9BACT8.260e-544.74Glycine cleavage system H protein n=1 Tax=Candidat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 1..50
e-value: 1.5E-6
score: 29.7
IPR033753Glycine cleavage system H-protein/SimiatePFAMPF01597GCV_Hcoord: 3..44
e-value: 4.0E-7
score: 29.9
IPR011053Single hybrid motifSUPERFAMILY51230Single hybrid motifcoord: 3..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:299574..300061 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.87.1mRNA_P-littoralis_Contig77.87.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig77 298810..300767 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig77.87.1 ID=prot_P-littoralis_Contig77.87.1|Name=mRNA_P-littoralis_Contig77.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MFGELIQANKALLENPGLMSEDPLGLGWLAIVRLKPRDLRHLQQALGVVE
ER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033753GCV_H/Fam206
IPR011053Single_hybrid_motif