mRNA_P-littoralis_Contig77.87.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.87.4
Unique NamemRNA_P-littoralis_Contig77.87.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.87.4 vs. uniprot
Match: A0A7S0DQ98_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DQ98_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 4.800e-6
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:  411 GVDQCLSFHPNGLAVVQLAPTHPAVGDGDSAI-VTADFDAGGCNVLESATVKGKKKRGALQLHPATVLCSVMTKGRNQYKVR 653
            G+DQ +  H NGL V+ LAP+HP +  G +AI VT D+ AG      +  V+GK K+GA+     T +C++     ++Y VR
Sbjct:   54 GLDQYVQHHTNGLIVIGLAPSHPVLQQGKTAIKVTWDYKAG------NNKVRGKHKKGAMLFEAHTCVCTIECSDGSKYCVR 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.87.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0DQ98_9EUKA4.800e-639.02Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:300028..302076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S187_53V6.1
PFAMsGCV_H
Model size953
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.43e-07
EggNOG OGsKOG3266@1|root,KOG3266@2759|Eukaryota,37IH0@33090|Viridiplantae,3GB6S@35493|Streptophyta
Descriptionmitochondrial gene expression
Cds size774
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791590.1976929-UTR-P-littoralis_Contig77:300027..3001321680791590.1976929-UTR-P-littoralis_Contig77:300027..300132Pylaiella littoralis U1_48UTRP-littoralis_Contig77 300028..300132 -
1680791590.2514694-UTR-P-littoralis_Contig77:302002..3020761680791590.2514694-UTR-P-littoralis_Contig77:302002..302076Pylaiella littoralis U1_48UTRP-littoralis_Contig77 302003..302076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791590.2136927-CDS-P-littoralis_Contig77:300132..3004811680791590.2136927-CDS-P-littoralis_Contig77:300132..300481Pylaiella littoralis U1_48CDSP-littoralis_Contig77 300133..300481 -
1680791590.2253652-CDS-P-littoralis_Contig77:300815..3010191680791590.2253652-CDS-P-littoralis_Contig77:300815..301019Pylaiella littoralis U1_48CDSP-littoralis_Contig77 300816..301019 -
1680791590.2357764-CDS-P-littoralis_Contig77:301781..3020021680791590.2357764-CDS-P-littoralis_Contig77:301781..302002Pylaiella littoralis U1_48CDSP-littoralis_Contig77 301782..302002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.87.4prot_P-littoralis_Contig77.87.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 300133..302002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.87.4

>prot_P-littoralis_Contig77.87.4 ID=prot_P-littoralis_Contig77.87.4|Name=mRNA_P-littoralis_Contig77.87.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MSDDGVSQTNKGVKRPRTQAEDLAGESPKDTDHVQEEQQQPQQHQQPQSG
GGGGGSRSRRGGRDSVANSPQAYSGISPLPQQHPRLANTDLPGCIVRQDF
HCAVLSDACGQDGVDQCLSFHPNGLAVVQLAPTHPAVGDGDSAIVTADFD
AGGCNVLESATVKGKKKRGALQLHPATVLCSVMTKGRNQYKVRLPTIVGR
GACVSWLSARGETEARHRRASFSRHVRTINSIVDRREALFQTLACCTHCS
FVAPWRR*
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mRNA from alignment at P-littoralis_Contig77:300028..302076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.87.4 ID=mRNA_P-littoralis_Contig77.87.4|Name=mRNA_P-littoralis_Contig77.87.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=2049bp|location=Sequence derived from alignment at P-littoralis_Contig77:300028..302076- (Pylaiella littoralis U1_48)
CGAAAAAGAAAAAGCAGACAGAGAGGGACCAAGTGTGCGATCGGGCGTGG
GGTACGAATAGAAGTATTACGGCGATGTCTGATGACGGTGTATCCCAAAC
AAATAAGGGGGTTAAGCGACCGCGCACGCAAGCAGAAGACTTGGCTGGCG
AATCACCAAAGGATACCGACCATGTACAGGAAGAACAGCAGCAGCCGCAG
CAACACCAACAGCCGCAGTCAGGAGGAGGAGGGGGGGGGTCAAGGAGCAG
GCGCGGAGGTCGCGACTCCGTTGCCAATTCACCACAAGCATACAGGTGAG
TAGGAACGGCAGCGGATGGCATAGATCACACAGCAGTGTGGCTTCTCCAC
TCCTAAATTTCAGAATTGAGCCTCGAGTGCACTGGTGACGGCTTATACTC
TACCGTATACTTGTATACAGCAGGAGTCGCCACAGCAGCTGTTCCTGGCG
GTAGCTTTGAACACGCCGAGCATCTTGTCTTCTTTAGGAATCACGTGCGA
AGTGTTTTTTGAAGTATACGGCAGTGCTATCAAGATGAACTGAAGGAATG
ATATCTGCTTGCTTCTGCGTCTTCATCTCATTTTATCAACGAGGTAAATC
CAGTAAAGGCTTTTGCTCTCCGTTTGGACCGCACTCCAAACTCCAAACTA
AAAAGTAGACAGCGGTACCTGGTATCCTTGTATTGTACTGCTGTATTTAC
ATAGTTCGAAGCACGACTTCAAACTATATACTGTATAGCGTCCTTATTTT
TCTCAACAATTTATTTTTCGATCTTTTGTAGAAATGAAATTTGTCACGAC
TTGATGGGCGGCATCGCTCACTATTCCGGAATGAGGTTTTGCCGCACAAT
AGTCCATTATTATTTCGATACAGTATAAATGTGCGCTTAGTGGAATGCTG
GCAGCTGCACCTTTGTGGCGCGCATCGAAAAAACACCTTGTTTCTGAATA
GCGAGCTGTGAGTCTGAGTTGTGCACGGCCTCTTCCATAATGGCAACGAC
AACTTTTCGCTTCCCGTGTCTGCCTGGTTGCTCTGTCGTGCCGCACAAAC
GACCAAGTGGCATATCACCACTACCTCAGCAGCACCCGCGCTTGGCCAAC
ACCGATTTGCCGGGGTGTATCGTCCGGCAAGACTTTCACTGCGCGGTGCT
GTCTGACGCGTGCGGCCAAGATGGGGTGGACCAATGCCTGAGCTTCCACC
CAAACGGGCTAGCTGTCGTCCAGCTCGCTCCGACGCATCCTGCAGTGGGA
GACGGCGACAGGCGAGCTTGTGTATTATACTCCAAGTTATTACTGATGCT
TTTGGTTGGTTTGCCTGTTCAAAAGCCAACAGCAATGCTGGAAATCTGTT
GGAATGCTACGCGACTGGTATTGTAGTTTGATTCAGACAGGGTGCGCGTC
CATACTGCTGTATTGCGTCATTTCCAGCACTGCCCTTCTGCGGGTCTACC
GTTGGCAGTCGTCGAGGATACCACCTTTTCTATTTGCAGTACAGAACGGT
GCACTAAAGTGGCACGAACTTTACGCCACACGTCAGTCCTCTTCGCAGAC
GCTTTCCGCTTCTTCCGCCCGCCCTATTTGATCATGTCGGTTCAGTGCCA
TCGTAACCGCGGACTTCGATGCGGGAGGGTGTAACGTGCTCGAGTCTGCG
ACGGTCAAGGGGAAAAAAAAAAGGGGGGCCCTCCAACTCCACCCGGCCAC
GGTTTTGTGCAGCGTCATGACAAAGGGTAGGAACCAATACAAGGTGCGTT
TACCCACCATAGTTGGCAGAGGAGCGTGCGTTTCCTGGTTGTCCGCCAGA
GGTGAAACTGAAGCACGGCATCGTCGTGCTTCTTTTTCGCGACACGTACG
GACAATAAACAGCATTGTAGATCGACGCGAAGCCTTGTTCCAAACCCTTG
CTTGCTGCACGCACTGCTCGTTCGTCGCTCCGTGGCGGCGTTGAATCGGT
GTTGCCCTGCTCCTCTACATTACTGAATGAATATTCGAATTTGAACCGCC
AAGGTTTGCACGGGGATGTTTGGTGAGCTGATTCAAGCGAACAAGGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:300028..302076-

>mRNA_P-littoralis_Contig77.87.4 ID=mRNA_P-littoralis_Contig77.87.4|Name=mRNA_P-littoralis_Contig77.87.4|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig77:300028..302076- (Pylaiella littoralis U1_48)
ATGTCTGATGACGGTGTATCCCAAACAAATAAGGGGGTTAAGCGACCGCG
CACGCAAGCAGAAGACTTGGCTGGCGAATCACCAAAGGATACCGACCATG
TACAGGAAGAACAGCAGCAGCCGCAGCAACACCAACAGCCGCAGTCAGGA
GGAGGAGGGGGGGGGTCAAGGAGCAGGCGCGGAGGTCGCGACTCCGTTGC
CAATTCACCACAAGCATACAGTGGCATATCACCACTACCTCAGCAGCACC
CGCGCTTGGCCAACACCGATTTGCCGGGGTGTATCGTCCGGCAAGACTTT
CACTGCGCGGTGCTGTCTGACGCGTGCGGCCAAGATGGGGTGGACCAATG
CCTGAGCTTCCACCCAAACGGGCTAGCTGTCGTCCAGCTCGCTCCGACGC
ATCCTGCAGTGGGAGACGGCGACAGTGCCATCGTAACCGCGGACTTCGAT
GCGGGAGGGTGTAACGTGCTCGAGTCTGCGACGGTCAAGGGGAAAAAAAA
AAGGGGGGCCCTCCAACTCCACCCGGCCACGGTTTTGTGCAGCGTCATGA
CAAAGGGTAGGAACCAATACAAGGTGCGTTTACCCACCATAGTTGGCAGA
GGAGCGTGCGTTTCCTGGTTGTCCGCCAGAGGTGAAACTGAAGCACGGCA
TCGTCGTGCTTCTTTTTCGCGACACGTACGGACAATAAACAGCATTGTAG
ATCGACGCGAAGCCTTGTTCCAAACCCTTGCTTGCTGCACGCACTGCTCG
TTCGTCGCTCCGTGGCGGCGTTGA
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