prot_P-littoralis_Contig77.80.5 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig77.80.5
Unique Nameprot_P-littoralis_Contig77.80.5
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length84
Homology
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BLAST of mRNA_P-littoralis_Contig77.80.5 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.390e-27
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0 
Query:   30 DVPTKQFILSLDARLACVVSDLDATHIFVKKDSVKEIQRELELLHEKNVYVRPR 83
            DVPTKQFI+SLDARLACVVSDLDATH+FVKKDSVKEIQRELE LHEKNVYVRPR
Sbjct:   16 DVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.80.5 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G710_ECTSI1.390e-2794.44General transcription and DNA repair factor IIH su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 29..81
e-value: 3.8E-5
score: 33.1
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 29..80
e-value: 6.0E-15
score: 55.0
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 27..81
e-value: 6.6E-14
score: 53.4
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 29..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:281785..283679 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.80.5mRNA_P-littoralis_Contig77.80.5Pylaiella littoralis U1_48mRNAP-littoralis_Contig77 281775..284439 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig77.80.5 ID=prot_P-littoralis_Contig77.80.5|Name=mRNA_P-littoralis_Contig77.80.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MLEVVTFIGSMDVMWFTQPVPAGVSRDLSDVPTKQFILSLDARLACVVSD
LDATHIFVKKDSVKEIQRELELLHEKNVYVRPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
IPR035935TFB5-like_sf