mRNA_P-littoralis_Contig77.80.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.80.5
Unique NamemRNA_P-littoralis_Contig77.80.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.80.5 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 9.830e-26
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:   98 DVPTKQFILSLDARLACVVSDLDATHIFVKKDSVKEIQRELELLHEKNVYVRPR 259
            DVPTKQFI+SLDARLACVVSDLDATH+FVKKDSVKEIQRELE LHEKNVYVRPR
Sbjct:   16 DVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.80.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G710_ECTSI9.830e-2694.44General transcription and DNA repair factor IIH su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:281775..284439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog248742.XP_005649505.1
PFAMsTfb5
Model size1022
Max annot lvl3041|Chlorophyta
KEGG koko:K10845
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000476
EggNOG OGsKOG3451@1|root,KOG3451@2759|Eukaryota,37W5F@33090|Viridiplantae,34NYW@3041|Chlorophyta
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
DescriptionTranscription factor TFIIH complex subunit Tfb5
Cds size252
COG categoryS
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791589.9697108-UTR-P-littoralis_Contig77:281774..2817841680791589.9697108-UTR-P-littoralis_Contig77:281774..281784Pylaiella littoralis U1_48UTRP-littoralis_Contig77 281775..281784 +
1680791590.0219486-UTR-P-littoralis_Contig77:283679..2844391680791590.0219486-UTR-P-littoralis_Contig77:283679..284439Pylaiella littoralis U1_48UTRP-littoralis_Contig77 283680..284439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791589.981914-CDS-P-littoralis_Contig77:281784..2818701680791589.981914-CDS-P-littoralis_Contig77:281784..281870Pylaiella littoralis U1_48CDSP-littoralis_Contig77 281785..281870 +
1680791589.9939232-CDS-P-littoralis_Contig77:283012..2831261680791589.9939232-CDS-P-littoralis_Contig77:283012..283126Pylaiella littoralis U1_48CDSP-littoralis_Contig77 283013..283126 +
1680791590.0073822-CDS-P-littoralis_Contig77:283627..2836791680791590.0073822-CDS-P-littoralis_Contig77:283627..283679Pylaiella littoralis U1_48CDSP-littoralis_Contig77 283628..283679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.80.5prot_P-littoralis_Contig77.80.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 281785..283679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.80.5

>prot_P-littoralis_Contig77.80.5 ID=prot_P-littoralis_Contig77.80.5|Name=mRNA_P-littoralis_Contig77.80.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MLEVVTFIGSMDVMWFTQPVPAGVSRDLSDVPTKQFILSLDARLACVVSD
LDATHIFVKKDSVKEIQRELELLHEKNVYVRPR*
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mRNA from alignment at P-littoralis_Contig77:281775..284439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.80.5 ID=mRNA_P-littoralis_Contig77.80.5|Name=mRNA_P-littoralis_Contig77.80.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=2665bp|location=Sequence derived from alignment at P-littoralis_Contig77:281775..284439+ (Pylaiella littoralis U1_48)
CGAGCCGAACATGCTTGAGGTGGTAACATTCATTGGCAGCATGGACGTCA
TGTGGTTTACGCAGCCAGTACCGGCCGGTGTTTCGAGGGATTTGAGGTAA
TATGAGAGAGAAAAAGGATTGAATAAAGCGTTGTGAGTCTATAGACGTAT
CATAGTCTTAGCAGAACTGCGCATGATGTGTTCAAGGCGTACAGAGGCGT
GATTTTTCGGAAAGCGGGGCAATTGAATGTTGCGCCGCCGACGCGTGGAT
TTTTGTGCGCGTGGTGGGGATAGTATACACTCATTGGAGAGGCCGGTCTC
AGCCTCTAATTTTTACTAAACATGTCATAAGAGCGACCCACAGCTTCACG
GTTTAGAAGACAATGCGGCCGCTGATAAAGAGTAAAGCAGCTATCATGGT
ACAACATAAACAAGAGTCGGGTGGTTGTACAAATTCAAACCACCGCATCT
ACCTACCTGTTTCGTGCTTGAGATTGCAGAAGTTCGCTCTTACTACACAT
AAGTCTGTTGACTGCTGTACACTGCGGCTTCGTAATCAGCGATTCGTCTT
CTACCTCTCTCGTCTCACCTCAACTCCACCGAACCACTTTAACGTACTCT
GTGGTCAAAACACAAAACGACGGCAATGCTGTGAACGGATGACGCGTTGA
TTGCTTTTAGTGCTGCAGTATTCGCAGACAATTCTTCGTCTAGCCCCGCT
CTCTCCTGCCCTGGTCGACGCAAACAAACCTTGTCCGCCTCACGTGAGCA
CATGGCCGGGGGATCTGACCTTGTTGAAACTTCAACCTGGAACAGATAAA
AACGATTTTTGTAAATAGTCCACGATCGCAATCCACACTCGTTGCTGTTA
TTGTTGTCGAGCTGGCCCTTCTGGATACGTATGCGTGACCTCGCTCAATG
AACCCGATCCTACAATGCCCTGAGCCTTTCACGAAATAATCACCTCGTGA
ATTCCTGCAGCCGCCAGCAGGTGGCTCTGCCCCCATTCAGTCCCTCTCTG
CTAAACCCACTGGGGCTCTATAGCCTCTTGTAATCGTAACGAAGGTTCCC
CCCTCGTGCATGGCGGTGATGCCGGTAGGGTGTGTAGGCTGCGGGCCCGC
CGGTGGCCCTGCCCCCGGGTATTTACCACTTACTCCGGAGTATTATTTTG
CCTTGTGAATCTGTATTGCGGTGTCGTGATGTAATCTGCCAAAACGATCG
TTGCTGCCAACGTATTACCTGCCCTGTTGCTCGCAAAGCGATGTGCCTAC
GAAGCAGTTCATCCTGAGCCTGGACGCGCGGCTGGCATGCGTTGTGTCTG
ATCTCGACGCCACTCACATCTTCGTCAAGAAAGACAGCGTCAAGGAGATA
CAGTGAGTTTACCACTGAGAATCTGTTGTTCAAGGACCGCACTGCAAGAC
ATGAGAACCATCATGTACGTAAACATATACTTCGGTGTGTGTATGTACTT
TAGCGTGTAAAAATGTCTAGGCTTGGGTTCGTAAGACTTCAGGCAAACAC
GAAAGAAGAGGCGTCCCATCCTAAAATTGCTTGATGTAGAAACAGGTATT
GAGAGTGCCACGGTCTGAATTGCTGCAAGACTTAAAATATTTGTATGTTT
GCACATGCGCTCACCGTTCATTACGCCGCAGCCAGAAGTCGAAGGAGTGC
CTTCATGTAGCCCATAAGTTCGAATAAACTTCATGGACTTGATAACAATT
ATTCGGGAAGATATCTCATTTTCTATAAGCTGTTGGGGTGCAATCGGGTG
TCATTCCCGCCGGAGCGATGCTTTCCTTCCTTGACGACTGCTGTATCATG
AATGTTCACCAAGAACAGCAGCGCTCCACTGTAACATGCTTGTCTCTTCT
CAGGCGGGAACTGGAGCTGCTGCACGAGAAAAACGTATACGTGCGGCCTC
GATGATAGCGGGGGGGGGGCTGCTGTGCAGCACATCACGTTTTCGGGCAG
CACTCTCTACAAAACACCACCCAGTTAGGGTTGCGCACCACCATCGTATC
ATTCACGTTGTCGAGAGAAAATGCTGCTTATGAAAACCACCATGCCATAT
GATATATCGAGAGAGCAGTGGCTGTTCAGTGGGTGGAGCTTTTGTACTGC
TGTGCCGCGGTGCCCGTGGCGAAACACGTGTAGGGTTTTGAGGTCTAGAG
AGCCTGATAGCGTTCCTACACAGAGCCTTAGGACTGAGTGGGTTTCCTCA
GCGACCGCAATTGGTTATTCTAATTTGCTGCGTATAGGGCAGAAGGATAA
TTAATGGTTGGGCTGCATTGTGTTTGTGAGAAAGTATTTGTGACGCTCAC
GTGTACCGTGCACCGCCGTATTGCGATGCATCCGTGGCGCAATGCTGTAG
TGCACGTTGCACCGATGTATGTTTACTAGAGCAGTCGGTGTCTCGGCAAA
AATTTTGCGTGTGAAAGCAAGGAAGTTGGCAAATGAGAAAATAGTCTCCT
GGTGTCAGGTCGCGTTAGGCACCGACCACTACTGCGGTGATCTTGTCAAA
ATTGTTTGCGCACTGAGCGGGCAGTGTACCAGCTGCTGTTGGGCCGGTTG
ACGGTGCATTTGCCAAGACCCATTCGGCAAGAAAAAAAAACAGAGAGTCG
ACCATGACGTCAAGTGCTGTACTGCATTGCAGGTGGTGGATTGTTCCGCC
GAAGGCTTCGTTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:281775..284439+

>mRNA_P-littoralis_Contig77.80.5 ID=mRNA_P-littoralis_Contig77.80.5|Name=mRNA_P-littoralis_Contig77.80.5|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig77:281775..284439+ (Pylaiella littoralis U1_48)
ATGCTTGAGGTGGTAACATTCATTGGCAGCATGGACGTCATGTGGTTTAC
GCAGCCAGTACCGGCCGGTGTTTCGAGGGATTTGAGCGATGTGCCTACGA
AGCAGTTCATCCTGAGCCTGGACGCGCGGCTGGCATGCGTTGTGTCTGAT
CTCGACGCCACTCACATCTTCGTCAAGAAAGACAGCGTCAAGGAGATACA
GCGGGAACTGGAGCTGCTGCACGAGAAAAACGTATACGTGCGGCCTCGAT
GA
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