mRNA_P-littoralis_Contig77.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.67.1
Unique NamemRNA_P-littoralis_Contig77.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.67.1 vs. uniprot
Match: D7G704_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G704_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 1.120e-99
Identity = 198/413 (47.94%), Postives = 250/413 (60.53%), Query Frame = 1 
Query:   58 SDEDQGEDRLLDHFGPSGVNRTDMKTLDLEAAVMIAPGWEDSNCCFD-------RFITDERGLRRRTVYDPTEMARVLQSHHRSSTGASWLLMAGMLETALDPSKPGCESLLICKAVTDAFLVNRGLAAVIDDGN-----HGG--------DLFVRSLRQTWEHAVERCDGYADERHTAADLHVTASWFQAWEASDGTSNQKPLIDAYNLHDMLPGDWVWVLEHLETAGASQGGLHLQEELELEAAEEQQLKLPRAKWGLEDLKRYLLLVSNDVWFQEG-GMIDIKVLGPNRPSTFRRVFSGVPGAIYGCLNDFAGVALTSPTFRMYTTGDMVEALGAEAMVRSRDIGEAASAEVKLG----EVERSADPSSSADADSDGGNGAARRRQVVSLVEIQLTWVGGYTHVLGWLNS 1221
            S  D+GEDRL+  FGP    R   +  D++A  + A GW     CFD       R+        R  V+DPTEMAR+LQ+   S   + W  M  ++ET L+   PG E+LLI KAVTDAF V    +  +DDG+     +GG        DL V +LRQ WEHAV   +G  +E H++ D HVTA+WFQAWEAS            Y + D+LP DW WVLE LE+   S+G  H++ ELELEA EE QL LP   W L D+KR LLLVS++ WF+EG  M+D+++ GP R STFRRVF  VPGA+ GCL D AGVAL  PTFRMYT GD+ +A G +A+VRSRDI   AS E   G    EVE S+   SS+ A    G+ A   R+ +S+ EIQ+TWV GYTHVLGWL+S
Sbjct:   41 SSNDEGEDRLIQDFGPG---RRVHEAEDMDA--VGAAGWGTG--CFDPSVKNLHRYAAAVGDHGRPVVFDPTEMARLLQASG-SGIDSLWR-MEELIETTLERGTPGGETLLILKAVTDAFFV---ASRAVDDGSADVRSNGGAFNGDNERDLLVPALRQAWEHAVRHRNGNPNEWHSSVDFHVTAAWFQAWEAS------------YQVEDVLPADWTWVLEQLESQETSEGP-HIEGELELEAVEELQLGLPPENWSLNDVKRSLLLVSDESWFREGQAMVDLRLFGPTRESTFRRVFFDVPGAVDGCLKDRAGVALIPPTFRMYTAGDIFDAFGDDAVVRSRDI---ASGETLRGTALEEVEGSSSDDSSSTASDISGSAATGPRREISIAEIQVTWVDGYTHVLGWLDS 425
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BLAST of mRNA_P-littoralis_Contig77.67.1 vs. uniprot
Match: A0A6H5J7D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D6_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 1.710e-96
Identity = 193/409 (47.19%), Postives = 246/409 (60.15%), Query Frame = 1 
Query:   58 SDEDQGEDRLLDHFGPSGVNRTDMKTLDLEAAVMIAPGWEDSNCCFD-------RFITDERGLRRRTVYDPTEMARVLQSHHRSSTGASWLLMAGMLETALDPSKPGCESLLICKAVTDAFLVNRGLAAVIDDG----NHGG--------DLFVRSLRQTWEHAVERCDGYADERHTAADLHVTASWFQAWEASDGTSNQKPLIDAYNLHDMLPGDWVWVLEHLETAGASQGGLHLQEELELEAAEEQQLKLPRAKWGLEDLKRYLLLVSNDVWFQEG-GMIDIKVLGPNRPSTFRRVFSGVPGAIYGCLNDFAGVALTSPTFRMYTTGDMVEALGAEAMVRSRDIGEA-ASAEVKLGEVERSADPSSSADADSDGGNGAARRRQVVSLVEIQLTWVGGYTHVLGWLNS 1221
            S +D+GEDRL+  FGP    R   +  D++       G +    CFD       R++       RR V+DPTEMAR+LQ    S   + W  M  ++ET L+   PG E+LLI KAVTDAF V     AV DD     ++GG        DL V +LRQ WEHAV   +G  +E H++ DLHVTA+WFQAWEA            AY + D+LP +W WVLE LE+   S+G  H++ EL LEA E  QL LP   W L+D+KR LLLVS++ WF+EG  M+D+++ GP R STFRRVF  VPGA  GCL D AGVAL  PTFRMYT GD+ +A G +A+VRSRDI     S    L EVE S+   SS+ A+   G+  A  R+ V++ EIQ+TWV GYTHVLGWL+S
Sbjct:   78 SSKDEGEDRLIQDFGPG---RRVHEAKDMDEVGAAGRGTD----CFDLSVKNWHRYVAAVGDRGRRVVFDPTEMARLLQPSG-SGIDSLWR-MEKLIETTLEQETPGGETLLILKAVTDAFFV--ASRAVDDDSAAIWSYGGALSGDKERDLLVPALRQAWEHAVMHRNGSPNEWHSSVDLHVTAAWFQAWEA------------AYQVEDVLPANWTWVLEQLESQETSEGP-HIEGELVLEAVEGLQLGLPPENWSLDDVKRSLLLVSDERWFREGQAMVDLRLFGPTRESTFRRVFFDVPGAFDGCLKDRAGVALIPPTFRMYTAGDIFDAFGHDAVVRSRDIASGETSRRAALEEVECSSSDDSSSTANDTSGSVTAGPRREVAIAEIQVTWVDGYTHVLGWLDS 462
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G704_ECTSI1.120e-9947.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7D6_9PHAE1.710e-9647.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:242093..245432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1365
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011570.1
Cds size1107
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791589.3203712-UTR-P-littoralis_Contig77:242092..2422181680791589.3203712-UTR-P-littoralis_Contig77:242092..242218Pylaiella littoralis U1_48UTRP-littoralis_Contig77 242093..242218 +
1680791589.3656664-UTR-P-littoralis_Contig77:245300..2454321680791589.3656664-UTR-P-littoralis_Contig77:245300..245432Pylaiella littoralis U1_48UTRP-littoralis_Contig77 245301..245432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791589.3318653-CDS-P-littoralis_Contig77:242218..2427901680791589.3318653-CDS-P-littoralis_Contig77:242218..242790Pylaiella littoralis U1_48CDSP-littoralis_Contig77 242219..242790 +
1680791589.3455179-CDS-P-littoralis_Contig77:244216..2444481680791589.3455179-CDS-P-littoralis_Contig77:244216..244448Pylaiella littoralis U1_48CDSP-littoralis_Contig77 244217..244448 +
1680791589.3558562-CDS-P-littoralis_Contig77:244997..2453001680791589.3558562-CDS-P-littoralis_Contig77:244997..245300Pylaiella littoralis U1_48CDSP-littoralis_Contig77 244998..245300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.67.1prot_P-littoralis_Contig77.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 242219..245300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.67.1

>prot_P-littoralis_Contig77.67.1 ID=prot_P-littoralis_Contig77.67.1|Name=mRNA_P-littoralis_Contig77.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=369bp
MKTLDLEAAVMIAPGWEDSNCCFDRFITDERGLRRRTVYDPTEMARVLQS
HHRSSTGASWLLMAGMLETALDPSKPGCESLLICKAVTDAFLVNRGLAAV
IDDGNHGGDLFVRSLRQTWEHAVERCDGYADERHTAADLHVTASWFQAWE
ASDGTSNQKPLIDAYNLHDMLPGDWVWVLEHLETAGASQGGLHLQEELEL
EAAEEQQLKLPRAKWGLEDLKRYLLLVSNDVWFQEGGMIDIKVLGPNRPS
TFRRVFSGVPGAIYGCLNDFAGVALTSPTFRMYTTGDMVEALGAEAMVRS
RDIGEAASAEVKLGEVERSADPSSSADADSDGGNGAARRRQVVSLVEIQL
TWVGGYTHVLGWLNSIEV*
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mRNA from alignment at P-littoralis_Contig77:242093..245432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.67.1 ID=mRNA_P-littoralis_Contig77.67.1|Name=mRNA_P-littoralis_Contig77.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3340bp|location=Sequence derived from alignment at P-littoralis_Contig77:242093..245432+ (Pylaiella littoralis U1_48)
AGGACTGGTGCTACTGCTGTTGCAAAAAATGATGCCGAGCCCGTGACGCC
GGGTGGTAGTGATGAAGACCAGGGAGAAGATCGACTCCTCGACCACTTCG
GCCCGAGCGGCGTAAATCGGACAGACATGAAGACCTTAGATTTAGAGGCG
GCGGTGATGATTGCGCCGGGATGGGAAGACTCCAACTGCTGTTTCGACCG
ATTCATCACTGACGAGCGCGGCCTCCGCCGCCGCACTGTATACGATCCCA
CGGAGATGGCCCGAGTACTCCAGTCTCATCACCGCAGTAGCACAGGCGCA
AGCTGGCTGCTGATGGCCGGTATGCTCGAGACGGCGCTAGACCCGAGCAA
GCCCGGGTGCGAGTCACTGCTGATTTGCAAAGCAGTCACAGATGCCTTTC
TGGTGAACCGGGGTTTGGCTGCCGTAATCGATGATGGAAACCACGGAGGA
GATTTGTTCGTTCGAAGCTTGAGACAAACCTGGGAGCACGCCGTGGAGCG
TTGTGATGGATACGCTGACGAACGGCATACCGCGGCGGATTTGCATGTGA
CGGCCTCGTGGTTTCAGGCGTGGGAGGCGTCCGACGGTACAAGCAACCAA
AAGCCATTGATCGACGCGTATAACCTTCACGACATGCTGCCCGGGGATTG
GGTTTGGGTGTTGGAACACTTGGAGACTGCAGGAGCGTCACAAGGAGGGT
GAGTTTTTATCACAAGTACTCTATTTGTAATCATTTCATACATACTCCGT
GTAGGTATGATATAATATGACATGTACGAGTATATGATACACATGATTAC
AGCATGTTGGGCTGCTGGTCATAATGTCTGTACTCACCGAAATAAGAATA
GCAAAAAATTATCCGTTCGCTTTTCCCGGACACTTTTCTTCCCAGAAGGT
GCGAACTTTTCGACTACAGGTCGTGCATAAAGTTTAGACCAAAGTTAGAA
CCCGCCCTGAACACCTACAGCATTAGATGGAGAATATATATATTGACAGT
AGGCAGTACCATTATGATGCGTACGGATTGTTAAAATAAAAAAAGAGGAA
ACTGTCGTATTTTACATTTTGCACCACATACACGGACAATCCATGTACTA
GCCTTTGAGCACGCCCCCGGCATGATAACGCCTTCTTCCCTAAAAAACAT
CGCCAAGGGACCACAAAAAGTTATAGTTCTCTACCCTTTTGAGTTTGTCC
CTACCTGAACGTGTTGTTTTTTGTCAAATTATTTGGGCACCCCGCGGCGC
GTTCGCAGATAACCCACCGCAGCATTCATTCGGGCAACATTATCGTTGTT
GTGGCGGTGGTGTGCTGATGTTGTGTGATGTCGTTTTCGGTATCTTTTCG
CATTGAAATCCTTTCCATCGTCAGCTGACATTCGACCATCATCTCGGAGG
GCAGTGTACCTACTACCCGGATGCCCCGGGAACGTTTCTCCCCCGAGGCT
TACTTTTGTTACCGGGGTTTTTTATTTTTTCTTCGAAGTATTAGAGATCG
TTCGCGAAAAGTACCGTGAAGTACCGCCCACGCGGGGCTTCCCGAATTAT
GCTACGGTGGCCAGCGCCTACATCGTCAGCACTGAAGGCTGCTCTATGGT
GGGGAGGGTTTGTCCCTTCCACATGAGCAAGAAAGGCCGGGATTCGATTC
CCGGCACCCACGAGCCCTTTTTCTGCCTCTCTCTTCTGTTAGACTGGGAA
CAGAGCAAAAAACATAAGGCGCGTGTATGATACATACTCTACGCGGTTCA
GGTTTCTCTTTCAAGAGCTACCATGTCCCACAAACAACAGCGCGCGGCGA
ATGAGAACTCCTCCCGGAGATGGGTAGAAATAGGAATTCAACCCCCGAAA
TCCTCTGTTCTGCTAGTAAAAGGTATTCATCGCTTACACCGCTAAGCCAG
CGATGGTCCCGTTCACTAGGTGTATCACGAACAACACGGTTTGCCGCGGA
AGAAGCAGTTTATATTACAGTATTCCATTATTTGTGCTTCTTGTCCGAGC
GTGGCGATAGCATAAAAAAAAATAGTCCTCATGCCGTCGCACCACGCCAA
AGTCCTCAATCAGCGTGTGTCAATACCCACGCCACATCGAGATATCTGCT
CTTGAAACCTTACGCCGACGACAGCCTTCACCTACAGGAAGAGCTGGAAC
TGGAAGCAGCCGAGGAGCAACAGCTCAAACTCCCACGAGCGAAGTGGGGA
CTCGAAGACCTGAAGCGCTATCTACTGCTCGTGAGCAACGACGTCTGGTT
TCAGGAGGGAGGGATGATAGACATTAAAGTCCTTGGCCCAAACCGCCCGA
GTACGTTCCGGAGAGTGTTCTCTGGCGTGCCTGGAGCTATTTACGGCTGT
CTCAACGTGAGGTGTCGTCTGCTGGGAATTGTGGAATGCGTGGTCTCTCA
AATTCATTCATTCGTGATCGACGATATCGCGTAGTGTTTGAATCCGGACC
ATGAATGTTGTTGGGTGAAGCTTGTCGAAGTACCGCGAAGTATCCCCAGA
TAATGGTTTGCCTCATGCCGCTTTGAGTGGACAACATCTTAACTTGATAC
CATGGGCCAATAGGAGTACAACAACATTCAGGCACATGATAGGTACTACA
TTTAGTTTGAATTCCCACGTAGATCATGCCCTGAGGAAATGGCACCGATT
TCGCGACATGTGTTTTAAGGTAGGCGATTTCATTGTTCGGGTCACCAGTT
GCCTGGAATTGTTTCCTGACAGCTAGAATCGTGAACCAGCGCAGGGCCGA
CGACTCAGCTTTGTCGTCCTCGGCTTCATAGAATGAATCGAGTGCGAGCT
ACAACCTGTGCTTCTCAATGCCCACAGCACAACCCGAGAGGTGGCACACC
CCATCGTACTCACCACACACACTCAAACACGATACTGTGCGTTTTTATTA
ACCAGGACTTCGCCGGGGTAGCTTTGACCTCGCCGACGTTCCGAATGTAC
ACTACGGGTGACATGGTCGAAGCGCTCGGGGCAGAAGCCATGGTGAGATC
TCGGGACATTGGAGAAGCGGCGTCGGCGGAAGTCAAGCTCGGGGAAGTCG
AGCGAAGCGCTGACCCGAGCAGCTCTGCTGACGCGGACTCCGACGGTGGT
AACGGGGCTGCGAGACGGCGACAGGTCGTTTCTCTAGTGGAGATACAGCT
GACCTGGGTGGGTGGTTACACGCACGTCTTGGGCTGGCTGAATTCCATAG
AGGTGTGATTCAGCCAAGCGTGTAAGGTCCGCTGGGTTCAGGACAACAAA
AGACTGCTCGCAAAGGAATGGCGTCGTGCAAATAAAAACAAACTTGGACA
TGGAATCCAGCGGATCTTTTTTCGAGGTGGCCAAAAAATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:242093..245432+

>mRNA_P-littoralis_Contig77.67.1 ID=mRNA_P-littoralis_Contig77.67.1|Name=mRNA_P-littoralis_Contig77.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1107bp|location=Sequence derived from alignment at P-littoralis_Contig77:242093..245432+ (Pylaiella littoralis U1_48)
ATGAAGACCTTAGATTTAGAGGCGGCGGTGATGATTGCGCCGGGATGGGA
AGACTCCAACTGCTGTTTCGACCGATTCATCACTGACGAGCGCGGCCTCC
GCCGCCGCACTGTATACGATCCCACGGAGATGGCCCGAGTACTCCAGTCT
CATCACCGCAGTAGCACAGGCGCAAGCTGGCTGCTGATGGCCGGTATGCT
CGAGACGGCGCTAGACCCGAGCAAGCCCGGGTGCGAGTCACTGCTGATTT
GCAAAGCAGTCACAGATGCCTTTCTGGTGAACCGGGGTTTGGCTGCCGTA
ATCGATGATGGAAACCACGGAGGAGATTTGTTCGTTCGAAGCTTGAGACA
AACCTGGGAGCACGCCGTGGAGCGTTGTGATGGATACGCTGACGAACGGC
ATACCGCGGCGGATTTGCATGTGACGGCCTCGTGGTTTCAGGCGTGGGAG
GCGTCCGACGGTACAAGCAACCAAAAGCCATTGATCGACGCGTATAACCT
TCACGACATGCTGCCCGGGGATTGGGTTTGGGTGTTGGAACACTTGGAGA
CTGCAGGAGCGTCACAAGGAGGCCTTCACCTACAGGAAGAGCTGGAACTG
GAAGCAGCCGAGGAGCAACAGCTCAAACTCCCACGAGCGAAGTGGGGACT
CGAAGACCTGAAGCGCTATCTACTGCTCGTGAGCAACGACGTCTGGTTTC
AGGAGGGAGGGATGATAGACATTAAAGTCCTTGGCCCAAACCGCCCGAGT
ACGTTCCGGAGAGTGTTCTCTGGCGTGCCTGGAGCTATTTACGGCTGTCT
CAACGACTTCGCCGGGGTAGCTTTGACCTCGCCGACGTTCCGAATGTACA
CTACGGGTGACATGGTCGAAGCGCTCGGGGCAGAAGCCATGGTGAGATCT
CGGGACATTGGAGAAGCGGCGTCGGCGGAAGTCAAGCTCGGGGAAGTCGA
GCGAAGCGCTGACCCGAGCAGCTCTGCTGACGCGGACTCCGACGGTGGTA
ACGGGGCTGCGAGACGGCGACAGGTCGTTTCTCTAGTGGAGATACAGCTG
ACCTGGGTGGGTGGTTACACGCACGTCTTGGGCTGGCTGAATTCCATAGA
GGTGTGA
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