mRNA_P-littoralis_Contig77.57.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig77.57.1 vs. uniprot
Match: D7G6Z4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z4_ECTSI) HSP 1 Score: 484 bits (1246), Expect = 1.000e-157 Identity = 359/737 (48.71%), Postives = 439/737 (59.57%), Query Frame = 1
Query: 1 MHGSASARAIGRETVGAGLAWRKEQVQKEILEQKALIEKLEGRVASLSGRGARNAASRRSSALSEEDWGRDTSRRQEGTDDRPATTPESESMEMQPGSGDNQRGQHLPESGRGRAGSRSGTKSADDFSELADHGGSTAQRDSLCLSRES---AACLGQQKEEKSAVAIQRNVRGTGRRKKFLTLQSAREDFEHHLQALLXXXXXXXXXXXXXXXXSIGGVMGGGFGS--RVNIVSEAAVRLLETSREDGLAKPPFEILRAMYSGIDDVTGALASLSSAEGKQEAGASADARGGAYIGGTSCSTTMTESLSMAKEALEAIREAVGAHITTIGKSRALRGASDASFTVVPRHHQESPVGSGRAAALAMASGRGGLLASPDVSPTSYLELPAGMSSTE-------GGE--------AGAVSLRTLDVEGVAHLLRTHGFQEHAQGFVAQAVDGVMLNDPNLCEADFAELGLGGGVA-GAPNSRARMVSFFRRCQQSGAVFPDAEGSPVSWEEGVRPRPDARRTGDLPHDERRDDESST--------------GQSNPI---SSEESPWRRGSALVDRENQRVLAEIPLDSTHAGGTSMPTSTGNDRGRRISLKLNQGVVVTTGSSEVSLLHNTDDSWVSDAEDEATAAA-------------GRGM---GGASSAAQG---------GRRTSVGLPPLTFCKEPAGEGEGGGLETK--GDLRLAPGVAVTTAGTAVDVFR 2016
M+GS SARA+ G+GLA RKEQVQKEIL QK LIEKLEGRVASLSGRG AA R SSA +E+ R T+ R + +DRPATT +++ + G D L S R +A S+S K E+ADHG A+RDSL S + A GQQ+ E+ AV IQRNVRG RRK+FLTLQ+ARE+ EHHLQAL+ G S + VS AA RLLETSREDGLAKPPFEILRAMY G+ +VT A+ LS+AE ++ G S R A I G C+ T ES AKEAL+AIREAVGA T IG++ + AS PR HQ SP GSGRAAA+AM S RGGLL S D PT+ E AG E GG A +V LR+LDVE VA LLR HGF+EH GFVAQAVDGVML+DPNLCEAD AELGLGG A GA +SRARMVSFFR+CQ++G VFP A GS S+ V PR D+ GD D+RR ++S+T G+S S+++SPWRRGS LVDRENQRV+A+I LDS+ G TG + GRR+S+KLNQGVV+T G E + N + +A + AA+ G+G GA++A +G GRRTS+GLP +T KE GGL+++ G + + PGV VTTA + V+VFR
Sbjct: 1 MYGSTSARALDSSR-GSGLAERKEQVQKEILAQKELIEKLEGRVASLSGRGGHRAAPRGSSAPPQEESERGTTGRHD-IEDRPATTTDAKQPHGEEGDHD------LDGSARAKANSQSRGKGKSCCQEVADHG-PNARRDSLRRSSQGESQAGYRGQQRTEQCAVEIQRNVRGASRRKRFLTLQAAREELEHHLQALVSAAATALAHRQHQQDQQPNDGRGAEVDSEGKAKNVSIAAERLLETSREDGLAKPPFEILRAMYCGLSEVTLAVECLSAAEEEEAGGVSGRGRN-ARISGLPCAATTAESCDAAKEALDAIREAVGADTTVIGETAHSTVQATASSPNAPRDHQYSPAGSGRAAAIAMTSARGGLLVSVDEPPTTDGESLAGKEHREVNDARNRGGSVDPGDTRPAQSVPLRSLDVERVAQLLRLHGFEEHVPGFVAQAVDGVMLSDPNLCEADLAELGLGGRAAEGAQDSRARMVSFFRKCQRNGVVFPVAGGSSPSFGGKVEPRTDSVHNGDSTPDDRRRNDSATLRKKEMGGLEGSVPGESKTDRTESTQDSPWRRGSVLVDRENQRVIAQISLDSSDTGRGDATAFTGTEGGRRMSVKLNQGVVITAGGREAGSVENMYELPAINAGEGELAASLEAAAXXXXXXXXGKGQEGGDGAAAAVRGSENSPAGNRGRRTSLGLPTVTLYKE-----SNGGLDSEEAGGMPIPPGVPVTTANSTVNVFR 722
BLAST of mRNA_P-littoralis_Contig77.57.1 vs. uniprot
Match: A0A6H5KQJ7_9PHAE (SAM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ7_9PHAE) HSP 1 Score: 376 bits (965), Expect = 1.360e-117 Identity = 270/519 (52.02%), Postives = 325/519 (62.62%), Query Frame = 1
Query: 379 FSELADHGGSTAQRDSLCLSRES---AACLGQQKEEKSAVAIQRNVRGTGRRKKFLTLQSAREDFEHHLQALLXXXXXXXXXXXXXXXXSIGGVMGGGFGS--RVNIVSEAAVRLLETSREDGLAKPPFEILRAMYSGIDDVTGALASLSSAEGKQEAGASADARGGAYIGGTSCSTTMTESLSMAKEALEAIREAVGAHITTIGKSRALRGASDASFTVVPRHHQESPVGSGRAAALAMASGRGGLLASPDVSPTSYLELPAGMSSTEGGEAG---------------AVSLRTLDVEGVAHLLRTHGFQEHAQGFVAQAVDGVMLNDPNLCEADFAELGLGGGVAG-APNSRARMVSFFRRCQQSGAVFPDAEGSPVSWEEGVRPRPDARRTGDLPHDERRDDESST--------------GQSNPI---SSEESPWRRGSALVDRENQRVLAEIPLDSTHAGGTSMPTSTGNDRGRRISLKLNQGVVVTTGSSEVSLLHNTDDSWVSDAEDEATAA 1821
F E+ADHG A+RDSL S ++ A G+Q+EE+ AVAIQRNVRGT RK+FLTLQ+ARE+ E LQAL XXXXXXXXXXXXX G S + VS AA RLLETSREDGLAKPPF+ILRA+Y + + T A+A LS+AE + E G A I G C+ TM ES AKEAL+AIREAVGA T IG+ + AS PR HQ SP GSGRAAA+AM S RGGLL S D PT++ E AG EG +A V LR+LDVE VA LLR HGF+E+A GFVAQAVDGVML+DPNLC+ D ELGLGGG A A +SRARMVSFFR+CQ+ G VFP A GS S+ + PR D+ GD D+RR +ES+T G+S S+++SPWRRGS LVDRENQRV+A+I LDS G TG + GRR+S+KLNQGVV+T G E + N ++ +AE+ AA
Sbjct: 54 FQEVADHG-PIARRDSLRRSSQAESQAGYRGRQREEQCAVAIQRNVRGTSGRKRFLTLQAAREELERSLQALASAAXXXXXXXXXXXXXQPNDGRGAEVDSEGKAKNVSIAAERLLETSREDGLAKPPFKILRAIYCSLSEATLAVACLSAAE-EGEVGRVVGGSRNARISGLPCAATMAESCDAAKEALDAIREAVGAGTTVIGEMAHTTVHATASSPNAPRDHQHSPAGSGRAAAIAMTSARGGLLVSADEPPTTHGESLAGQEHREGNDARNRGESVDPGDKRPAQPVPLRSLDVERVAKLLRLHGFEEYAPGFVAQAVDGVMLSDPNLCQDDLTELGLGGGAAERAQDSRARMVSFFRQCQRHGVVFPVAGGSSPSFGGKIEPRTDSVHNGDSTSDDRRRNESATLRKKEMGGLEGSVPGESKTDRTESTQDSPWRRGSVLVDRENQRVIAQISLDSGGTGRGDATAFTGTEGGRRMSVKLNQGVVITAGGREAGSVENMNELPAINAEEGELAA 570 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig77.57.1 >prot_P-littoralis_Contig77.57.1 ID=prot_P-littoralis_Contig77.57.1|Name=mRNA_P-littoralis_Contig77.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=673bp MHGSASARAIGRETVGAGLAWRKEQVQKEILEQKALIEKLEGRVASLSGRback to top mRNA from alignment at P-littoralis_Contig77:184883..188211+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig77.57.1 ID=mRNA_P-littoralis_Contig77.57.1|Name=mRNA_P-littoralis_Contig77.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3329bp|location=Sequence derived from alignment at P-littoralis_Contig77:184883..188211+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig77:184883..188211+ >mRNA_P-littoralis_Contig77.57.1 ID=mRNA_P-littoralis_Contig77.57.1|Name=mRNA_P-littoralis_Contig77.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2019bp|location=Sequence derived from alignment at P-littoralis_Contig77:184883..188211+ (Pylaiella littoralis U1_48)back to top |