mRNA_P-littoralis_Contig77.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.47.1
Unique NamemRNA_P-littoralis_Contig77.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.47.1 vs. uniprot
Match: D7G6Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.400e-23
Identity = 81/171 (47.37%), Postives = 95/171 (55.56%), Query Frame = 1 
Query:    1 PLEAGEDGTFDLGSPSPPASPVKPV---RKKQNAAEG--SKAPVAESELCGSPPIKDDWEKVDLKGADDGPPLPPXXXXXXXXXXXXXXESL-----EDFKDAVEGNFTTEQTDTAQQAGTERAAGSGGSG--VDSDAADTRSGQAAAAETSVSQPP-SIVEERPPPATGR 474
            PLEAGEDGTFD+G  SPP SP K V   R+ QNA     S AP  + + CGSPPIKDDWEKVDL GAD+G  LPP               S      EDF+DAVE    T+     QQAGT       G+   VD D+     GQAA  E+S + PP ++VE+RPP   GR
Sbjct:   10 PLEAGEDGTFDVGDASPPPSPPKRVGSARRTQNATATTVSTAPATDGDPCGSPPIKDDWEKVDLDGADEG--LPPPAGNASQGREAGAPPSAPEYAQEDFQDAVE----TQDESATQQAGTGATTTEDGTSCCVD-DSPGKACGQAARVESSAAAPPHAVVEQRPPGLGGR 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Y9_ECTSI3.400e-2347.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:149553..150031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6Y9
Preferred nameTTC1
PFAMsTPR_1,TPR_2,TPR_8
Model size479
Max annot lvl2759|Eukaryota
KEGG koko:K04136,ko:K07562
KEGG Pathwayko03008,ko03013,ko04020,ko04022,ko04080,ko04261,ko04270,ko04970,map03008,map03013,map04020,map04022,map04080,map04261,map04270,map04970
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034450,GO:0034605,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045184,GO:0045732,GO:0045862,GO:0046332,GO:0046907,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070585,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
Exons1
Evalue5.57e-24
EggNOG OGsKOG4234@1|root,KOG4234@2759|Eukaryota
Descriptionprotein binding, bridging
Cds size477
COG categoryS
BRITEko00000,ko00001,ko03009,ko04030
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791587.8328917-CDS-P-littoralis_Contig77:149552..1500291680791587.8328917-CDS-P-littoralis_Contig77:149552..150029Pylaiella littoralis U1_48CDSP-littoralis_Contig77 149553..150029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.47.1prot_P-littoralis_Contig77.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 149553..150029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.47.1

>prot_P-littoralis_Contig77.47.1 ID=prot_P-littoralis_Contig77.47.1|Name=mRNA_P-littoralis_Contig77.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
PLEAGEDGTFDLGSPSPPASPVKPVRKKQNAAEGSKAPVAESELCGSPPI
KDDWEKVDLKGADDGPPLPPEKSNEGGGPPPPPEESLEDFKDAVEGNFTT
EQTDTAQQAGTERAAGSGGSGVDSDAADTRSGQAAAAETSVSQPPSIVEE
RPPPATGRA
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mRNA from alignment at P-littoralis_Contig77:149553..150031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.47.1 ID=mRNA_P-littoralis_Contig77.47.1|Name=mRNA_P-littoralis_Contig77.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=479bp|location=Sequence derived from alignment at P-littoralis_Contig77:149553..150031+ (Pylaiella littoralis U1_48)
CCACTGGAGGCCGGGGAGGACGGTACCTTCGATCTCGGAAGTCCGTCACC
ACCCGCCTCACCGGTCAAACCTGTCCGAAAAAAACAAAATGCGGCGGAAG
GTTCCAAGGCCCCGGTAGCCGAGAGCGAGCTGTGTGGCTCACCGCCGATA
AAAGACGATTGGGAAAAGGTCGATCTGAAGGGGGCCGACGACGGGCCACC
GCTGCCGCCAGAGAAGAGCAACGAGGGGGGAGGACCACCGCCACCACCGG
AAGAGTCGTTGGAAGACTTCAAAGACGCAGTCGAGGGTAATTTTACGACC
GAGCAGACCGATACGGCCCAGCAGGCCGGGACGGAGCGTGCGGCAGGCAG
TGGCGGGAGCGGCGTGGATAGTGACGCAGCAGACACGAGATCCGGGCAAG
CGGCCGCCGCCGAGACGTCGGTTTCTCAACCACCGTCAATCGTGGAGGAG
CGGCCACCACCTGCGACCGGAAGAGCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:149553..150031+

>mRNA_P-littoralis_Contig77.47.1 ID=mRNA_P-littoralis_Contig77.47.1|Name=mRNA_P-littoralis_Contig77.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig77:149553..150031+ (Pylaiella littoralis U1_48)
CCACTGGAGGCCGGGGAGGACGGTACCTTCGATCTCGGAAGTCCGTCACC
ACCCGCCTCACCGGTCAAACCTGTCCGAAAAAAACAAAATGCGGCGGAAG
GTTCCAAGGCCCCGGTAGCCGAGAGCGAGCTGTGTGGCTCACCGCCGATA
AAAGACGATTGGGAAAAGGTCGATCTGAAGGGGGCCGACGACGGGCCACC
GCTGCCGCCAGAGAAGAGCAACGAGGGGGGAGGACCACCGCCACCACCGG
AAGAGTCGTTGGAAGACTTCAAAGACGCAGTCGAGGGTAATTTTACGACC
GAGCAGACCGATACGGCCCAGCAGGCCGGGACGGAGCGTGCGGCAGGCAG
TGGCGGGAGCGGCGTGGATAGTGACGCAGCAGACACGAGATCCGGGCAAG
CGGCCGCCGCCGAGACGTCGGTTTCTCAACCACCGTCAATCGTGGAGGAG
CGGCCACCACCTGCGACCGGAAGAGCA
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