mRNA_P-littoralis_Contig77.46.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.46.2
Unique NamemRNA_P-littoralis_Contig77.46.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: D7G6Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y9_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 7.510e-139
Identity = 272/405 (67.16%), Postives = 304/405 (75.06%), Query Frame = 1
Query:    1 SDRQEE-PLEAGEDGTFDLGSPSPPASPVKPV---RKKQNAAEG--SKAPVAESELCGSPPIKDDWEKVDLKGADDGPPLPPXXXXXXXXXXXXXXESL-----EDFKDAVEGNFTTEQTDTAQQAGTERAAGSGGSG--VDSDAADTRSGQAAAAETSVSQPPSIVEERPPPATGRAESIIATGLANVRLPMGYVRRCGEEP----VDSDDEDQFHDAFDSGPGMVKDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFER 1164
            +DR EE PLEAGEDGTFD+G  SPP SP K V   R+ QNA     S AP  + + CGSPPIKDDWEKVDL GAD+G  LPP               S      EDF+DAVE    T+     QQAGT       G+   VD D+     GQAA  E+S + PP  V E+ PP  G   ++IA+GLANVRLPMGY R+  ++     VDSD E+QFHDA DSGPG+VKDA KAREMKE GNEHY+N +FEDA+DYYTMALHYCPEDE HKKDRAV+LANRAQGHL+L+EYE VVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXX LRLAKESVPRLEKL NDKNE+MKEEAIGKLK+LGN++LGNFGLSTDNFKMKQDP TGSYS+NFER
Sbjct:    3 NDRNEEAPLEAGEDGTFDVGDASPPPSPPKRVGSARRTQNATATTVSTAPATDGDPCGSPPIKDDWEKVDLDGADEG--LPPPAGNASQGREAGAPPSAPEYAQEDFQDAVE----TQDESATQQAGTGATTTEDGTSCCVD-DSPGKACGQAARVESSAAAPPHAVVEQRPPGLGGRVNVIASGLANVRLPMGYGRQMRQDEEDGLVDSDGEEQFHDAQDSGPGVVKDATKAREMKEAGNEHYKNGEFEDAVDYYTMALHYCPEDEAHKKDRAVFLANRAQGHLRLEEYETVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXSLRLAKESVPRLEKLHNDKNEKMKEEAIGKLKDLGNALLGNFGLSTDNFKMKQDPNTGSYSINFER 400          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A835YHX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX5_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.850e-39
Identity = 106/187 (56.68%), Postives = 139/187 (74.33%), Query Frame = 1
Query:  625 MVKDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXG------LRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGS-YSVNFER 1164
            M KDAAKA+EMKE GN +Y  K + DA D YT+AL +CP+DE  ++++AVY +NRA  HL+L++++ VV DCT AL + P YVKALLR XXXXXXXXXXXXXXXXXXXXXX          ++ A   + RL+KL  +K E++K+EA+GKLKELGNS+LG+FGLS DNFK+ QD   G  Y+++F +
Sbjct:    1 MTKDAAKAKEMKEQGNTYYLAKQYLDAADCYTLALEFCPDDEGERENKAVYFSNRAACHLRLEDFQQVVNDCTEALTIKPKYVKALLRRXXXXXXXXXXXXXXXXXXXXXXAPPEEAPPKVVQKALTDIDRLQKLHEEKMEQLKDEALGKLKELGNSLLGHFGLSLDNFKVNQDASGGGGYNISFNK 187          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A7S3HEF4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEF4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.670e-37
Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  631 KDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVN 1155
            K+ +KA E KE GN ++RNK+++DA++ Y+ A+ +CPEDEE+K++ A +  NR+  +  ++E+E VVEDCTAAL L   YVK + R                                + + RL+   +DK  +MK+EA+GKLKELGNSILGNFG+S DNFKM QDP TGS++++
Sbjct:   73 KNLSKALEAKEEGNNYFRNKEYDDALEAYSKAITFCPEDEENKENLATFYGNRSAAYFAVEEFELVVEDCTAALALKADYVKVIARRMLANEKLEKYEEALTDAKLVQDNDPNYPKIADKIRRLQIAYDDKMTKMKDEALGKLKELGNSILGNFGMSLDNFKMNQDPATGSWNIS 247          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A7S2S6C6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.540e-36
Identity = 99/180 (55.00%), Postives = 132/180 (73.33%), Query Frame = 1
Query:  625 MVKDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFER 1164
            ++++A  A ++KE GNE Y++K++ +AID Y+ AL Y PE++ +   RAVYL+NRA   L L  YE V+EDCT ALE DP YVKALLR      XXXXXXXXXXXXXXXXXXXX    A +   RL+ +   K+E +K+E +GKLK+LGN++LG FG+S DNFK  QDP+TGSYS++F++
Sbjct:   60 VIRNAETAAKLKEQGNEEYKSKNYLNAIDIYSDALEYVPEEKLYDSARAVYLSNRAACFLALGHYEDVIEDCTDALENDPRYVKALLRRAQAHEXXXXXXXXXXXXXXXXXXXXXXXXAVQEQRRLDAIVKKKHEELKDEMMGKLKDLGNTVLGKFGMSLDNFKTVQDPQTGSYSISFQQ 239          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: UPI0019298FD4 (tetratricopeptide repeat protein 1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019298FD4)

HSP 1 Score: 140 bits (354), Expect = 7.370e-35
Identity = 86/236 (36.44%), Postives = 128/236 (54.24%), Query Frame = 1
Query:  457 IVEERPPPATGRAESIIATGLANVRLPMGYVRRCGEEPVDSDDEDQFHDAFDSGPGMVKDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFER 1164
            ++E+ P  A  ++ S  +TG A V               DS DE+ F DA +    + K   +  + K  GN  + +  +EDA+  Y +AL    E  + ++ R++  ANRA   L+L++Y+  +++CT ALEL+PSYVKALLR                              A+ ++ RLE +  +K E+MKEE IGKLKE+GNS+LG FG+S DNFK  +DP TGSYS++F+R
Sbjct:    3 LIEQEPDDANEQSRSSPSTGAAAV------------PDADSSDEEPFEDALNEEQLLEKARNQVNDAKIEGNRLFGSDQYEDALSKYELALQLASEGPDSEEIRSMCHANRAICFLKLQKYDDTIKECTKALELNPSYVKALLRRAEAHEKLDHLEEAIADMKKIMELDPSNDQARRTIQRLEPILAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 226          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A7S0J1B8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J1B8_9EUKA)

HSP 1 Score: 137 bits (346), Expect = 1.130e-33
Identity = 73/173 (42.20%), Postives = 105/173 (60.69%), Query Frame = 1
Query:  646 AREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFER 1164
            AR  KE GN H+   +++DAI+ Y+ A+   P D     +RAV+ ANRA  + ++ EYEAV+EDCT+AL + P YVKAL+R                            + A  ++PRLE   N K E+ K+E +GKLK+LGNS+LG FG+S DNFK ++DP TGSY+++F++
Sbjct:   62 ARTAKEQGNLHFGKGEWDDAIECYSEAIEVAPAD---SPERAVFFANRAACYSKIHEYEAVIEDCTSALAIKPEYVKALVRRAQAREELDQPTEALEDMRTAGKLDPDAKAATSAIPRLEAASNAKLEKQKDEMLGKLKDLGNSVLGRFGMSLDNFKAEKDPSTGSYNISFQQ 231          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A484E7C7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7C7_BRELC)

HSP 1 Score: 138 bits (347), Expect = 1.420e-33
Identity = 81/199 (40.70%), Postives = 112/199 (56.28%), Query Frame = 1
Query:  592 QFHDAFDSGP--------GMVKDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFER 1164
            ++ DA ++ P        G  +   KA   KE GN+ +    + DAI+ YT AL  CP +EE+  +RAVY +NRA   L+L   E  ++DCT A+ L P+YVKALLR                           +  A +S  RL+K+ +++ E+MK E + KLK  GN+ILG FGLSTDNFKM QDP TGSY++NFE+
Sbjct:   50 KYDDASENAPEEEKGDSKGKTETVKKASSAKELGNKFFTRGSYLDAIECYTTALKLCPSEEEYAYNRAVYFSNRAACLLRLGRTEESIDDCTQAVTLSPTYVKALLRRAEAYEKLDKLEEALADFDAVLKIDPTVPAAVKSHERLQKIVHERQEKMKAEMLDKLKGFGNTILGKFGLSTDNFKMVQDPATGSYNINFEQ 248          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A7S3Y5I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5I1_HETAK)

HSP 1 Score: 138 bits (347), Expect = 2.890e-33
Identity = 72/177 (40.68%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  631 KDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFE 1161
            KD   A++ KE GN H+  K+++DAI  Y  A+ YCP+DEE+K+ ++ Y  NRA   L   EY+ V+EDCT++LEL P Y K L+R                           LR A+    RL ++ N++ E++KEE +GKLK+LGNS+LG FG+S DNF++ QDP +G Y+++ +
Sbjct:  103 KDPEFAQQEKEQGNVHFAAKEYDDAILCYNNAILYCPDDEEYKEKKSTYFGNRAACFLYKHEYDKVIEDCTSSLELKPDYTKVLMRRAQAAEKLEKFEDALKDVTKVCELEPSLRKAQLDKLRLTQICNERMEKLKEETMGKLKDLGNSVLGYFGMSLDNFQVNQDPNSGGYNISMK 279          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A0M0J422_9EUKA (Tetratricopeptide repeat protein 1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J422_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 3.270e-33
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  640 AKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNF 1158
            A+AR  KE GN H++ ++++ AID YT A+   P DE    +RAV+ ANRA    ++ E+E VV+DCTAALEL P Y KAL+R                            +    +V RLEK   +K E+ KEE +GKLK+LGNS+LG FGLS DNFK  +DP TGSYS++F
Sbjct:   40 AEARAHKERGNVHFKAQEWDAAIDCYTHAIEVMPPDE---PERAVFFANRAAAFAKIDEHEGVVDDCTAALELQPQYTKALVRRALAREALDQPTEALEDAKTAAALDPSDKGLVAAVSRLEKASAEKLEKQKEEMLGKLKDLGNSVLGKFGLSLDNFKAVKDPNTGSYSISF 209          
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Match: A0A0P1AN90_PLAHL (TPR repeat-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AN90_PLAHL)

HSP 1 Score: 137 bits (344), Expect = 4.250e-33
Identity = 81/200 (40.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query:  565 EPVDSDDEDQFHDAFDSGPGMVKDAAKAREMKETGNEHYRNKDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLAKESVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPETGSYSVNFER 1164
            + VD D  D+ ++        VK A+ A+E+   GN+ +    F DAI+ YT AL  CP DEE+  +RAVY +NRA   ++L   E  V+DCT A+ L P+YVKALLR                           +  A ++  RL+K+ +++ E+MK E + KLK  GN+ILG FGLSTDNF+M QDP TGSY++NF++
Sbjct:   53 DDVDEDTSDEKNEGVKDKSKYVKKASSAKEL---GNKFFSRGSFLDAIECYTTALKLCPVDEEYAYNRAVYFSNRAACLMRLGRTEESVDDCTQAVTLSPTYVKALLRRAEAYEKMDKLEEALADYNAILKIDPTVPTAVKNHERLQKVVHERQEKMKAEMLDKLKGFGNTILGKFGLSTDNFQMVQDPATGSYNINFQQ 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.46.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y9_ECTSI7.510e-13967.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHX5_9STRA1.850e-3956.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HEF4_9STRA5.670e-3743.43Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2S6C6_9STRA1.540e-3655.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI0019298FD47.370e-3536.44tetratricopeptide repeat protein 1 n=1 Tax=Dioscor... [more]
A0A7S0J1B8_9EUKA1.130e-3342.20Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A484E7C7_BRELC1.420e-3340.70Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S3Y5I1_HETAK2.890e-3340.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0M0J422_9EUKA3.270e-3345.09Tetratricopeptide repeat protein 1-like protein n=... [more]
A0A0P1AN90_PLAHL4.250e-3340.50TPR repeat-containing protein n=1 Tax=Plasmopara h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:149535..152500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6Y9
Preferred nameTTC1
PFAMsTPR_1,TPR_2,TPR_8
Model size1703
Max annot lvl2759|Eukaryota
KEGG koko:K04136,ko:K07562
KEGG Pathwayko03008,ko03013,ko04020,ko04022,ko04080,ko04261,ko04270,ko04970,map03008,map03013,map04020,map04022,map04080,map04261,map04270,map04970
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034450,GO:0034605,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045184,GO:0045732,GO:0045862,GO:0046332,GO:0046907,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070585,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
Exons5
Evalue1.05e-97
EggNOG OGsKOG4234@1|root,KOG4234@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_011720.1
Descriptionprotein binding, bridging
Cds size630
COG categoryS
BRITEko00000,ko00001,ko03009,ko04030
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.46.2prot_P-littoralis_Contig77.46.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 150072..151964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791587.7279384-UTR-P-littoralis_Contig77:149534..1500711680791587.7279384-UTR-P-littoralis_Contig77:149534..150071Pylaiella littoralis U1_48UTRP-littoralis_Contig77 149535..150071 +
1680791587.8024454-UTR-P-littoralis_Contig77:151964..1525001680791587.8024454-UTR-P-littoralis_Contig77:151964..152500Pylaiella littoralis U1_48UTRP-littoralis_Contig77 151965..152500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791587.744662-CDS-P-littoralis_Contig77:150071..1502081680791587.744662-CDS-P-littoralis_Contig77:150071..150208Pylaiella littoralis U1_48CDSP-littoralis_Contig77 150072..150208 +
1680791587.7602694-CDS-P-littoralis_Contig77:150402..1505441680791587.7602694-CDS-P-littoralis_Contig77:150402..150544Pylaiella littoralis U1_48CDSP-littoralis_Contig77 150403..150544 +
1680791587.7701344-CDS-P-littoralis_Contig77:150851..1509721680791587.7701344-CDS-P-littoralis_Contig77:150851..150972Pylaiella littoralis U1_48CDSP-littoralis_Contig77 150852..150972 +
1680791587.780099-CDS-P-littoralis_Contig77:151228..1513421680791587.780099-CDS-P-littoralis_Contig77:151228..151342Pylaiella littoralis U1_48CDSP-littoralis_Contig77 151229..151342 +
1680791587.7927234-CDS-P-littoralis_Contig77:151848..1519641680791587.7927234-CDS-P-littoralis_Contig77:151848..151964Pylaiella littoralis U1_48CDSP-littoralis_Contig77 151849..151964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.46.2

>prot_P-littoralis_Contig77.46.2 ID=prot_P-littoralis_Contig77.46.2|Name=mRNA_P-littoralis_Contig77.46.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp
MGYVRRCGEEPVDSDDEDQFHDAFDSGPGMVKDAAKAREMKETGNEHYRN
KDFEDAIDYYTMALHYCPEDEEHKKDRAVYLANRAQGHLQLKEYEAVVED
CTAALELDPSYVKALLRRAQANERLEKYDLALQDAKDLLEIDPGLRLAKE
SVPRLEKLQNDKNERMKEEAIGKLKELGNSILGNFGLSTDNFKMKQDPET
GSYSVNFER*
back to top

mRNA from alignment at P-littoralis_Contig77:149535..152500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.46.2 ID=mRNA_P-littoralis_Contig77.46.2|Name=mRNA_P-littoralis_Contig77.46.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2966bp|location=Sequence derived from alignment at P-littoralis_Contig77:149535..152500+ (Pylaiella littoralis U1_48)
TCCGACCGGCAGGAGGAGCCACTGGAGGCCGGGGAGGACGGTACCTTCGA TCTCGGAAGTCCGTCACCACCCGCCTCACCGGTCAAACCTGTCCGAAAAA AACAAAATGCGGCGGAAGGTTCCAAGGCCCCGGTAGCCGAGAGCGAGCTG TGTGGCTCACCGCCGATAAAAGACGATTGGGAAAAGGTCGATCTGAAGGG GGCCGACGACGGGCCACCGCTGCCGCCAGAGAAGAGCAACGAGGGGGGAG GACCACCGCCACCACCGGAAGAGTCGTTGGAAGACTTCAAAGACGCAGTC GAGGGTAATTTTACGACCGAGCAGACCGATACGGCCCAGCAGGCCGGGAC GGAGCGTGCGGCAGGCAGTGGCGGGAGCGGCGTGGATAGTGACGCAGCAG ACACGAGATCCGGGCAAGCGGCCGCCGCCGAGACGTCGGTTTCTCAACCA CCGTCAATCGTGGAGGAGCGGCCACCACCTGCGACCGGAAGAGCAGAGAG CATTATCGCTACGGGGCTGGCCAACGTGCGGCTGCCGATGGGATACGTTA GACGATGCGGAGAAGAGCCGGTGGACAGCGACGATGAAGACCAATTCCAC GATGCCTTTGACAGCGGTCCGGGCATGGTAAAGGATGCGGCCAAAGCACG AGAGATGAAGGAGACAGGGAACGAGTGAGTCGTCCAGAAGGCCGTCCAGT TCAAAAGTCCGTACAAAAAAAACAGCCGTTGATACACTGATTTATACCCA GCCATGTTACCCGTATTTTGACACCGAATCGGTTGACATTGACTGACGGT GCCCCCGATCCCCATCTCTGCTTTCGCCGCACGTTGGCGATTGATTTGTC ACGGATCGGCAACGTCAGACACTACAGGAACAAGGACTTTGAAGATGCGA TCGACTACTACACCATGGCGCTCCACTACTGCCCGGAGGACGAGGAGCAC AAAAAAGACAGGGCTGTGTACCTCGCCAACCGCGCTCAAGGCCACCTTCA GTTGAAAGAAGTGAGTGTTGCACGCACGTTCGGAGAACTGTCGTGCATGG GAACGCTACTACTCGACGGCGATCGGCGTGGCAAACCTTGTTGGAGCGTT GCCTCGGCGGCTAGGGGAATCTGTGTGCAGGGCAGCACTCGTGCTCAGGA TTGATCGACACGACAATTTTTTTTTTGTCGACTCAACGGGTTTAATTCTT GACCGCTGATCGAGAACAGGCAACTTGTTCTGCTTCAGATTGCAGATGCG TGACACGAGATGCTGACATTCCCGTTCACAACCCCATTTTTCGAATTATC TCCTGTTTGTTTCGCAGTATGAAGCGGTAGTAGAGGATTGCACGGCTGCA CTAGAGCTCGACCCGAGCTACGTGAAGGCACTTCTGCGACGAGCGCAAGC GAACGAGCGTCTCGAGAAGTACGACTTAGCACTGCAAGGTAATTTCTTTT TTCTTTGCCGAATGAAGGTCCATATGATAGCCCATCTCCCTCTCAAGCGC ACTTTCGTGGTCAGTACCGAGCGTTGGTTGGTGGCTGTGGCACGGGACGC CACTGCAACACCGCCCTGCTCTTATCAGGCCTCGCATCAAGCACACACAA GAGCACTACTGCTCTGTCTCATCCTTGTAGGCTTTATTTTGACATTGACC CGTCACGCCCTCCTGCTGATTTTGTCTCTTGCGCTGTCGTGCAGACGCGA AGGATCTGCTAGAGATTGACCCGGGTCTACGCCTGGCGAAGGAAAGCGTG CCGCGATTGGAGAAGCTTCAGAACGACAAGAACGAACGTATGAAGGAAGA GGCGATCGGTGAGTCTTGTCGAAGGATGGTTATGCTGGAAAATCGCTTCG TAACAGTCAATCAAGTGCTTGTGGCGTGGAAGGAAATGTTGCACCTTCCC GCCTCTTGAGGTTTTAGGAGATCTGAAAAGGGGCATCGTACACTGCAAAA GGAGCGAGCTGTTGTGTTGCGTCGTCACGGGCCATTCTGTGCGAATGCAG GGCGCTTGTACCTTGTTTTGCTGACCATCCGCATCGCCGCCACGGAAACA AACAGACAGTGGGCCTCTTTGCGCGGGAGACGAATTTCACTCAAGTTCGT TCCGCTCCTGTTAAGTTTTCTGTTGTTGCCAAGAGCTGTTTCGTTCTCCA CGGTGCACGTCGCTTCGGCCGATCGGGGAGCCAGTCTCGTTGGTCACGCG GATCTGAATAGCCTCTCTGGCTCGTTAAAAGTCGTAGGAGCTTCAGTTTG TTTCGGTAGTTCACGCCATGCCTCCGCCGCTACCTCTCCTACTATTGAAC GCCGCCTTTCACAGGCAAGCTGAAGGAGCTCGGCAATTCCATTCTCGGAA ACTTCGGCCTCAGCACTGACAACTTCAAGATGAAGCAAGACCCGGAGACT GGCTCCTACAGCGTCAATTTTGAGAGATGATTTTAATTCCGTGTATAGAG GCGCCAAGCAGGTCATCCTGGCCACGAGTCACCAGTGCCAGCCTGTTGCG CGCTCGGTCATTCTTCCCCATGCTAAGCGAGGAGATGGTGTGGTTGTGTC GCTTGATTGTCAGCTGTGTAGATCCCACCGCAGCATCGCCCAGGGGTTTT TGCGGGTATGATTTATTATTTTGGGGTCGCGGGTATGTATATGGATGTGT TCGTCACTTGAGTAGACTGGCAGGTACCCATTTTTTCTGTGAGGGTGTCA CCAATGTTGCCTGTGGGTGATGAGGTCGATCGGCAGATTGTCCTCCCGAA AAACAAACTGCAGATATAATTGAGGGAGGTAATTGGATAATCCGCGCATT GCTCGCAGTTTATGTACAACTGGAAAAGTTTAACTACCGACGGTAAACAT TACCGACTCATGATTTTTTTCTTCAGTGCTCAAAAGAGGGCAAGGTTGAC TTTCTCCCTAGATTTTGCTGAACGGAGCTCTTCCTGAGGCTCTGCAGTAC AAGCGATGAATTACTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig77:149535..152500+

>mRNA_P-littoralis_Contig77.46.2 ID=mRNA_P-littoralis_Contig77.46.2|Name=mRNA_P-littoralis_Contig77.46.2|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig77:149535..152500+ (Pylaiella littoralis U1_48)
ATGGGATACGTTAGACGATGCGGAGAAGAGCCGGTGGACAGCGACGATGA
AGACCAATTCCACGATGCCTTTGACAGCGGTCCGGGCATGGTAAAGGATG
CGGCCAAAGCACGAGAGATGAAGGAGACAGGGAACGAACACTACAGGAAC
AAGGACTTTGAAGATGCGATCGACTACTACACCATGGCGCTCCACTACTG
CCCGGAGGACGAGGAGCACAAAAAAGACAGGGCTGTGTACCTCGCCAACC
GCGCTCAAGGCCACCTTCAGTTGAAAGAATATGAAGCGGTAGTAGAGGAT
TGCACGGCTGCACTAGAGCTCGACCCGAGCTACGTGAAGGCACTTCTGCG
ACGAGCGCAAGCGAACGAGCGTCTCGAGAAGTACGACTTAGCACTGCAAG
ACGCGAAGGATCTGCTAGAGATTGACCCGGGTCTACGCCTGGCGAAGGAA
AGCGTGCCGCGATTGGAGAAGCTTCAGAACGACAAGAACGAACGTATGAA
GGAAGAGGCGATCGGCAAGCTGAAGGAGCTCGGCAATTCCATTCTCGGAA
ACTTCGGCCTCAGCACTGACAACTTCAAGATGAAGCAAGACCCGGAGACT
GGCTCCTACAGCGTCAATTTTGAGAGATGA
back to top